#genome
stringclasses
121 values
asm_name
stringclasses
120 values
assembly_accession
stringclasses
120 values
bioproject
stringclasses
45 values
biosample
stringclasses
120 values
wgs_master
float64
seq_rel_date
stringclasses
98 values
submitter
stringclasses
76 values
ftp_path
stringclasses
120 values
img_id
float64
637M
2.51B
gtdb_id
stringclasses
120 values
scope
stringclasses
3 values
assembly_level
stringclasses
1 value
genome_rep
stringclasses
1 value
refseq_category
stringclasses
3 values
release_type
stringclasses
2 values
taxid
float64
1.15k
681k
species_taxid
float64
7
911k
organism_name
stringclasses
120 values
infraspecific_name
stringclasses
112 values
isolate
stringclasses
1 value
superkingdom
stringclasses
2 values
phylum
stringclasses
18 values
class
stringclasses
30 values
order
stringclasses
56 values
family
stringclasses
75 values
genus
stringclasses
89 values
species
stringclasses
117 values
classified
bool
1 class
lv1_group
stringclasses
2 values
lv2_group
stringclasses
13 values
score_faa
float64
0.93
1
score_fna
float64
0.88
1
score_rrna
float64
0.1
1
score_trna
float64
0.6
1
total_length
float64
618k
9.12M
contigs
float64
1
22
gc
float64
22.5
72.2
n50
float64
616k
9.03M
l50
float64
1
1
proteins
float64
525
7.92k
protein_length
float64
172k
2.68M
coding_density
float64
74
96.9
completeness
float64
76.3
100
contamination
float64
0
4.4
strain_heterogeneity
float64
0
100
markers
float64
124
383
5s_rrna
stringclasses
2 values
16s_rrna
stringclasses
1 value
23s_rrna
stringclasses
1 value
trnas
float64
14
20
draft_quality
stringclasses
2 values
start_position
int64
0
10M
human_label
int64
0
1
autotrain_text
stringlengths
150
150
autotrain_label
class label
121 classes
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,875,000
1
TCAGGCAGTCTGCGGCCTCTCGTGTCTGGCATCTGCAGTGCAGCTGTGGGCTTCGAGCTCCATCTGTGCTGTTTCCTGGGTCAGCGCCTCCTTCCCTTTTATGGTCACATAATGTTCCCACCATAATTTTCCTTTGCAGTGACTTTGAAA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,348,000
1
CAGTGGAAACAGCCTTCAGCCCGGACTCAGAAGACCTGGGTTCTGCACTTAACTGCTGTGTGATCTTAGATGAGTTACTTAATCCTTCTGGGGTAGCAAAAAGAATGCTCTCCTCATAAAGTTTCTGTGGAGATGAAAAAAGGCAAAAGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
454,800
1
ACCTGCTGCTGGGCCACACCTGGACTCAGCTCTACTGAGGACTTCCTTTCCTCAGTTTCTCACCTGGCCCTGCCAGATCTTCCTGGCCCTGCCCAGCCAAGGCCCCTCCCCCAGTCAACAACCCTCAGAAAGGCTCCTCCCCCCTTCTCT
120homo sapiens
G000009925
ASM992v1
GCF_000009925.1
PRJNA58195
SAMD00061068
null
2004/09/16
Kitasato Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/925/GCF_000009925.1_ASM992v1
637,000,025
RS_GCF_000009925.1
Monoisolate
Complete Genome
Full
reference genome
Major
295,405
817
Bacteroides fragilis YCH46
strain=YCH46
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Bacteroidaceae
Bacteroides
Bacteroides fragilis
true
Eubacteria
Bacteroidetes
1
0.998
0.9
1
5,310,990
2
43.2
5,277,274
1
4,416
1,603,639
88.979964
99.26
0
0
347
yes
yes
yes
20
high
3,528,330
0
ATCGCTTGCGAAATAGCACAGGTTATTCGTGATAAACAGAAAGCAGGACGTTTCTGCGTACTGGCATTGCCGGGTGGAAATTCTCCGCGCAGCGTATATGCCGAATTAATTCGCATGCACAAAGAAGAGGGACTCAGTTTCCGTAACGTA
10Bacteroides fragilis YCH46
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,584,600
1
TGAGTCCAGGAGCTCGAGAACAGCCTGGGCAGCATAGCGAGACCCTGTTCCTACAAAAATAAATACAAAATAATTAGCTGGGCATGGTGGCACGGGCCTGTGGTCCTAGCTGCTTGGGAGGCTGAGGTGGGAGGATCGCCTGAGCCTGGG
120homo sapiens
G000009825
ASM982v1
GCF_000009825.1
PRJNA224116
SAMD00061074
null
2004/12/30
Kao Corporation, Biological Science Laboratories, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/825/GCF_000009825.1_ASM982v1
637,000,019
RS_GCF_000009825.1
Monoisolate
Complete Genome
Full
representative genome
Major
66,692
79,880
Bacillus clausii KSM-K16
strain=KSM-K16
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus clausii
true
Eubacteria
Firmicutes
1
1
1
1
4,303,871
1
44.75
4,303,871
1
4,304
1,270,194
86.940919
98.67
0.33
0
373
yes
yes
yes
20
high
4,217,070
0
AGGCCGCCAGCTTCATGCGAACGTTGAATATTACGCTGCTGCAATCATGGAAGCACTTCGCCTTAAACCCGATTGGTTCACACCGACATTTTGTGTAAGCCGCGTCGTCGGATGGTGCAGCCATGTCATCGAACAAAGCCAAGACAACCG
8Bacillus clausii KSM-K16
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,782,000
1
TGTTATGGTTCACTGCAGCCTCGACTTCATGGACTCAAGTGATCCTCCCATTTCAGCCTCCTGAGTAGCTGGGACTACAGGGGGCAGGTGCCACCATGGCCAGCTAATTTATTTTGTAGAGATGGGTTTCACTATGTTGCCCAGGCTGGT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
391,800
1
CCCCTCCGCCCCTCCATTCAGGGGCCTCTCCAGGAGCCTGGGGTGTGGCCCAGCAGTGGGATCCACTCACGAGTCCCGTCTCCACCTGCCCTCCCCAGGCGGCGGGAGCCTGTTTGCCATCCACGGAGACTGTGAGGCCTACGACACGCG
120homo sapiens
G000010785
ASM1078v1
GCF_000010785.1
PRJNA224116
SAMD00060961
null
2010/02/11
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/785/GCF_000010785.1_ASM1078v1
646,311,936
RS_GCF_000010785.1
Monoisolate
Complete Genome
Full
representative genome
Major
608,538
940
Hydrogenobacter thermophilus TK-6
strain=TK-6
null
Bacteria
Aquificae
Aquificae
Aquificales
Aquificaceae
Hydrogenobacter
Hydrogenobacter thermophilus
true
Eubacteria
Bacteria
1
1
0.8
1
1,743,135
1
44
1,743,135
1
1,905
573,308
96.888881
98.78
0.51
0
310
yes
yes
yes
20
high
168,090
0
CTATGAGGAAAGCCATTATAAAGGGAAGCACTTTAAGCTCCGGTATCGCGTTGGGGTCTATATGCTTCATGCCTATGTAGTGGTTTAGAAGGTTTATGTTGTAAAGGTCAAACTCCGTACCGCCGGTTATCCTGTTTACCCATATGAACA
49Hydrogenobacter thermophilus TK-6 ASM1078v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,855,550
1
CTACCCTGGTGACTTAGGGTCGTGACTGCACCCCGGGCTCGCCTCTCTCGGCTCTGGCTGGCCACGACCTTCCTTTTGAAGGTGCCTGGAGGGTGACTCCGTGTTTCTTGTTTCCTCGTGGGGGATTTTAAATTTATGTCACTGGTGGTT
120homo sapiens
G000010345
ASM1034v1
GCF_000010345.1
PRJNA224116
SAMD00060915
null
2007/07/11
Japan Agency for Marine-Earth Science and Technology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/345/GCF_000010345.1_ASM1034v1
640,753,056
RS_GCF_000010345.1
Monoisolate
Complete Genome
Full
na
Major
387,093
387,093
Sulfurovum sp. NBC37-1
strain=NBC37-1
null
Bacteria
Proteobacteria
Epsilonproteobacteria
null
null
Sulfurovum
Sulfurovum sp. NBC37-1
true
Eubacteria
Proteobacteria
1
1
0.9
1
2,562,277
1
43.87
2,562,277
1
2,552
795,482
91.463999
99.59
0.61
0
334
yes
yes
yes
20
high
694,070
0
CACGGGAAAAAGGTCCTCAGAGGCCCTGACATCCGCAAAGAGAGCCTGACCTCTATGATCAACTCCGTTAACAGCTACCATAAGATCATGCCCCGCTATTACCTGACCGATGAAGAGGTAAAGGCGATCTACGACTACCTTCAGAAGAAA
98Sulfurovum sp. NBC37-1 ASM1034v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,980,800
1
CATACATATTTATTTATTTAAACAGACTTTATATTTTAGGCAGTTTTAGTTCACAGCAAATTTGAGCAGAAAATGCAGAGGTCCCATAGACTTCCTTACCCAACATACCCACGGCCTCCCGCTCTGTCAACACCCTGCAGCTGATTCATC
120homo sapiens
G000008345
ASM834v1
GCF_000008345.1
PRJNA224116
SAMN02603281
null
2004/07/30
Goettingen Genomics Laboratory
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/345/GCF_000008345.1_ASM834v1
637,000,215
RS_GCF_000008345.1
Monoisolate
Complete Genome
Full
representative genome
Major
267,747
1,747
Propionibacterium acnes KPA171202
strain=KPA171202
null
Bacteria
Actinobacteria
Actinobacteria
Propionibacteriales
Propionibacteriaceae
Cutibacterium
Cutibacterium acnes
true
Eubacteria
Actinobacteria
1
1
1
1
2,560,265
1
60.01
2,560,265
1
2,373
780,330
89.799572
100
0
0
319
yes
yes
yes
20
high
2,161,250
0
ATGGACGAGCTTTTATCCGAGATCGCCGCCTTGTCTGACAAAGTGAGCGTCGGTAAGCCCGTCGACAATGAGCGCACCCCCTCCTTTGCCATCACCCGCCCCGGAAGCCCCATCGACATCCGCTTTGCGGGCCTGCCGATGGGCCACGAA
77Propionibacterium acnes KPA171202
G000008545
ASM854v1
GCF_000008545.1
PRJNA57723
SAMN02603986
null
2001/01/09
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/545/GCF_000008545.1_ASM854v1
637,000,321
RS_GCF_000008545.1
Monoisolate
Complete Genome
Full
reference genome
Major
243,274
2,336
Thermotoga maritima MSB8
strain=MSB8
null
Bacteria
Thermotogae
Thermotogae
Thermotogales
Thermotogaceae
Thermotoga
Thermotoga maritima
true
Eubacteria
Bacteria
1
1
0.9
1
1,860,725
1
46.25
1,860,725
1
1,866
602,696
95.430706
100
1.79
100
312
yes
yes
yes
20
high
1,705,340
0
CTTGGAGCATTCGTCGGAATTTCACAGCAGTTCAAAGACGTCCCCGTCAACCACTGGGCCTACGAAGCGGTAATGGAAATGTCGAAACTCGGTGTTCTCACTGGAATGCCGGATGGAACGTTCCAGGGTAACTCCTACCTCACCAGGTAT
103Thermotoga maritima MSB8 ASM854v1
G000007345
ASM734v1
GCF_000007345.1
PRJNA224116
SAMN03081414
null
2002/04/03
Broad Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/345/GCF_000007345.1_ASM734v1
638,154,508
RS_GCF_000007345.1
Monoisolate
Complete Genome
Full
representative genome
Major
188,937
2,214
Methanosarcina acetivorans C2A
strain=C2A
null
Archaea
Euryarchaeota
Methanomicrobia
Methanosarcinales
Methanosarcinaceae
Methanosarcina
Methanosarcina acetivorans
true
Archaea
Euryarchaeota
0.98
1
0.8
0.9
5,751,492
1
42.68
5,751,492
1
4,884
1,470,904
75.340086
99.84
0.03
0
229
no
yes
yes
18
medium
1,754,090
0
AGCAACCGTAAATGAGGTCCTCAAGCTCACTATGGGTAAAGGTATAGAAACCCTTGCAACGCTTGAGGGCGAAAAAGCCGAAATTATTGAGTATACCGCATCCAGGCAGTCAAAAATCGTGGGAAAAACACTCAGCAAGGTCAAGTTTCC
61Methanosarcina acetivorans C2A
G000006725
ASM672v1
GCF_000006725.1
PRJNA224116
SAMN02603773
null
2004/06/04
Sao Paulo state (Brazil) Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/725/GCF_000006725.1_ASM672v1
637,000,348
RS_GCF_000006725.1
Monoisolate
Complete Genome
Full
representative genome
Major
160,492
2,371
Xylella fastidiosa 9a5c
null
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xylella
Xylella fastidiosa
true
Eubacteria
Proteobacteria
0.98
0.993
0.9
1
2,731,750
3
52.62
2,679,306
1
2,664
765,931
82.59299
99.59
0.18
0
325
yes
yes
yes
20
high
1,284,920
0
TGCCGACGGCGACGGCTTCACCGTGGTTGAGGTTGTTGCTTCCTGGTGTGCTGTAGCCCTGTGCTGTTTCGATGGCGTGGCCGAAGGTATGGCCGAGATTGAGCAGGACGCGTTCCCCTTTTTCCAGTGGGTCACGTCCGACAATATCGG
114Xylella fastidiosa 9a5c
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,675,650
1
ATATTAGTCAGGGTTCTCTAGAGGGACAGAACTAATAGGATAGATGTATATGGAAAGGGGAGTTTATTAAGGAGAATTAACTCACACAATTACAAGGTGAAGTCCCACAATAGGCAATCTGCAAATTGAGGAGCAAGGAAGCTAGTGGTG
120homo sapiens
G000008505
ASM850v1
GCF_000008505.1
PRJNA58089
SAMN02598265
null
2004/12/27
DOE Joint Genome Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/505/GCF_000008505.1_ASM850v1
637,000,023
RS_GCF_000008505.1
Monoisolate
Complete Genome
Full
reference genome
Major
281,309
1,428
[Bacillus thuringiensis] serovar konkukian str. 97-27
strain=97-27
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus thuringiensis
true
Eubacteria
Firmicutes
1
0.998
1
1
5,314,794
2
35.37
5,237,682
1
5,361
1,516,528
84.049767
99.07
0.31
0
381
yes
yes
yes
20
high
309,790
0
AATATGCTTGTGACATTTTAGATGAATTAAATATACCGTATGAGAAAAAGGTTGTATCCGCTCATCGGACTCCAGATTATATGTTTGAATATGCAGAGACGGCTCGTGAACGTGGATTGAAAGTTATTATTGCTGGAGCTGGTGGAGCAG
118[Bacillus thuringiensis] serovar konkukian str. 97-27
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,466,950
1
ACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGACCCGGGGTTCCCCCATCTTGGCCAGGCTGGTCTCGAACTCCTGATCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCAGCCAAT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,621,800
1
TGAAGGCACTTACCTAAATACTGCCGTGTTGCCAGTAGCGTGCCGGTTACCAGTTTGGCCGTTCTTGTACACAATGTGTGAGTAATGCTGTGCTCGTCAGAGGGGAGACTTTTATATTCAGTAATTTGTTTTATAAATTAAAGTGAAGGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,628,450
1
TGGGAGTTCAAGACCAGTCTGACCAACATGGAGAAACCCCGTCTCTACTAAAATACAAAATTAGCTGGGCGTGATGGCATGTGCCTGTAATCCCAGCTACTCTGGAGGCTGAGACAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,761,150
1
CCATCATTCAGATTTCTCATGGCATAGCCCTAGCCCCCCACCCCACTATCGGAGGAAACACAGTTTCCTGATAGGGTGGGCAAGGGGAGCAGGTTTCCCATCCCCCATTTCCTGTTGCTGACTCATGAAGAATGTGGTGAAGAGGCTTCC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,941,550
1
CAGTCTATCGTTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATCGTGAATAGTGCTGCAATAAACATACGTGTGCGTGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAAT
120homo sapiens
G000007525
ASM752v1
GCF_000007525.1
PRJNA57939
SAMN02603675
null
2005/01/21
Nestle Research Center, Switzerland
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/525/GCF_000007525.1_ASM752v1
637,000,031
RS_GCF_000007525.1
Monoisolate
Complete Genome
Full
reference genome
Major
206,672
216,816
Bifidobacterium longum NCC2705
strain=NCC2705
null
Bacteria
Actinobacteria
Actinobacteria
Bifidobacteriales
Bifidobacteriaceae
Bifidobacterium
Bifidobacterium longum
true
Eubacteria
Actinobacteria
1
0.996
0.9
1
2,260,266
2
60.13
2,256,640
1
1,833
667,063
86.967994
100
0
0
289
yes
yes
yes
20
high
685,360
0
AAGACTTGTCACAAAGTCGCGTGATGACGCAGCCGCCGTTCAGGTGGATATGCCACGCTGTCATGATGACGGCCGAGCCGGAACACGGCAAATCCCGCATGCTGCATAGGCCAGCCGGTCACGGTCAGCCATGACACCGAAATATTGGAG
13Bifidobacterium longum NCC2705
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,918,800
1
AAGACTCCGTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGGTTCACAGCAGTCAAAAGAACCACAAAGGAGCAGTAGTTTCTAAGCT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,261,000
1
AGACCAATGTAAAAACAAAGCATAATACATGTGATTTTCAAACATGCTGGACCTCAGGCCAATGTGACAACATTTCCTGTGGTCCAAGTCCCCAAAACAATTAGAGATTCATATGGAAGACTACAAAATAATCAACAAAAGAGAAATTGG
120homo sapiens
G000009145
ASM914v1
GCF_000009145.1
PRJNA224116
SAMEA3138193
null
2003/05/06
DOE Joint Genome Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/145/GCF_000009145.1_ASM914v1
637,000,195
RS_GCF_000009145.1
Multiisolate
Complete Genome
Full
representative genome
Major
228,410
915
Nitrosomonas europaea ATCC 19718
strain=ATCC 19718
null
Bacteria
Proteobacteria
Betaproteobacteria
Nitrosomonadales
Nitrosomonadaceae
Nitrosomonas
Nitrosomonas europaea
true
Eubacteria
Proteobacteria
0.98
1
0.9
1
2,812,094
1
50.72
2,812,094
1
2,670
848,291
88.875656
99.97
0.74
25
352
yes
yes
yes
20
high
249,990
0
TTCCGGCTGTGATTGCCTATAACCGCTATGCCAGTGATACTGCTCAGCTGGCAACCCGCTACGAAAGTTTCATAGAGGAAGTATCCAACGTACTGCAGCGTCGTGTGGCTAAACCTCGGGATATGGCGAATTTCTCATGATTCAGCGTCG
69Nitrosomonas europaea ATCC 19718
G000011005
ASM1100v1
GCA_000011005.1
PRJDA20361
SAMD00060931
null
2009/12/25
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/005/GCA_000011005.1_ASM1100v1
2,505,679,075
GB_GCA_000011005.1
Monoisolate
Complete Genome
Full
na
Major
304,371
570,267
Methanocella paludicola SANAE
strain=SANAE
null
Archaea
Euryarchaeota
Methanomicrobia
Methanocellales
Methanocellaceae
Methanocella
Methanocella paludicola
true
Archaea
Euryarchaeota
1
1
0.8
0.9
2,957,635
1
54.92
2,957,635
1
3,055
877,570
87.405714
100
0.65
0
198
no
yes
yes
17
medium
1,754,480
0
GGCAGCATGACCACGAACTTGGCACCCTTCGTATGGTCGCCGGGCACCCGGTCCTCCACCCATATACGGCCATGAAAATCGCGCACGAGCGTCTTCACCAGGTAGAGGCCCAGGCCTTTACCCTTAGCCCGGGTATTGCCGCGCTCGAAC
58Methanocella paludicola SANAE
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,427,250
1
TGGCATCGTCACGCGTTGCTGGTGGGAGTGTAAAGGGATACTCTGGAACACTGTTGGGCAATTTCTGTTTTCTTTTGTGACAGGGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGACACAATCACAGTTTACTACAGCCTCAAACTTC
120homo sapiens
G000008325
ASM832v1
GCF_000008325.1
PRJNA224116
SAMN02603968
null
2005/05/18
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/325/GCF_000008325.1_ASM832v1
637,000,166
RS_GCF_000008325.1
Monoisolate
Complete Genome
Full
representative genome
Major
243,233
414
Methylococcus capsulatus str. Bath
strain=Bath
null
Bacteria
Proteobacteria
Gammaproteobacteria
Methylococcales
Methylococcaceae
Methylococcus
Methylococcus capsulatus
true
Eubacteria
Proteobacteria
1
1
1
1
3,304,561
1
63.58
3,304,561
1
3,046
1,020,877
91.024466
99.2
0
0
357
yes
yes
yes
20
high
760,500
0
GGCTCCGTTCATGCTCAGCCCGGGCCGCTCGGGGCAAATTCCGTCGAACGGGAGCAAGCCGCGCCTCGGTCGGTCGACACCGCCCGCCCGCGGCTGCGGGTCATCCGCAGCACGCCCGAGGAGGCCGAAGCCCACGCCGCTCGCCTGGAG
63Methylococcus capsulatus str. Bath
G000010605
ASM1060v1
GCF_000010605.1
PRJNA224116
SAMD00060929
null
2008/04/08
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/605/GCF_000010605.1_ASM1060v1
641,522,653
RS_GCF_000010605.1
Monoisolate
Complete Genome
Full
representative genome
Major
455,632
1,911
Streptomyces griseus subsp. griseus NBRC 13350
strain=NBRC 13350
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces griseus
true
Eubacteria
Actinobacteria
1
1
1
1
8,545,929
1
72.23
8,545,929
1
7,113
2,547,362
87.837226
99.84
0
0
357
yes
yes
yes
20
high
1,213,680
0
AGGCGGCGGCGCACGAGCGGTCCCGGCTGCCGGGGACGCAGAACCGCTGGTCGGGCAAGAAGGACCAGTCGTGGGTGCCGCTGCGCCCGGAGCGGGTGTGCGAGGTGGCCTACGACCACATGGAGGGCGACCGGTTCCGGCACACCACCC
96Streptomyces griseus subsp. griseus NBRC 13350
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,899,200
1
CGCCCAGCCCCCGTCCGCCCACCCAGCCCTCTGCCCGCCAGTGGAGCGGAGCCGAGAAGCAGGGAGTGCGGGAGGATGCCCGAGGTCTCACGTCAGGACCCTCGACGGGGGTGGGGTGGAGAGGGAGGTGGTGGGTGGGGTGGGTGGTGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,316,900
1
ATGCATATATGCACCTGCGCCCATACATGCATGCACGTGTATGCATGCATACACATGCACATGTACCTATACATGTGTATACACAATATACATGCCATACACGCATGCATGCTCACCTGCAAGGGCATGCACACACACAAATAGCTCCTC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,803,400
1
AAACAGTGTTAGATGGTAGAGATAAACCCAGCCATATACATAATTGCATCAACTGTAAATGGCTTAAGCATTCCAATTAAAAGCTAGAGAGTATCAGACTGGACAAAAAAACCATAATACTCAATGACATGCTTTCTACAAGAAACACTT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,837,550
1
TCTGGGTCACCTGTCGGGTGGGGTCTGGGTGTCTGTGGTTTTAAGAGTTCCCCAAGTGACCTTAATAGGCAGCAGAGACGAGGTCACAGATCCAACCTCTCAGGGGAGGCGCCAACATCACCTCAAGTGGAGGAGACATACAGACCGGAT
120homo sapiens
G000007645
ASM764v1
GCF_000007645.1
PRJNA57861
SAMN02603126
null
2002/12/20
Chinese National HGC, Shanghai
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/645/GCF_000007645.1_ASM764v1
637,000,281
RS_GCF_000007645.1
Monoisolate
Complete Genome
Full
reference genome
Major
176,280
1,282
Staphylococcus epidermidis ATCC 12228
strain=ATCC 12228
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Staphylococcus
Staphylococcus epidermidis
true
Eubacteria
Firmicutes
1
0.977
0.9
1
2,564,615
7
32.05
2,499,279
1
2,354
721,937
82.93198
99.81
0
0
345
yes
yes
yes
20
high
1,283,620
0
AAGTGAATGGTTAACAGATTTAAACATCTCAGAAGACAATATGCGCCTTAGAGATCATGATGAAGATGAATTATCACACTATTCCAATGCTACTACTGATATTGAATATAAATTCCCATTTGGTTGGGGTGAATTATGGGGTATTGCGAG
88Staphylococcus epidermidis ATCC 12228 ASM764v1
G000007465
ASM746v2
GCF_000007465.2
PRJNA57947
SAMN02604090
null
2011/09/01
Univ. Oklahoma
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/465/GCF_000007465.2_ASM746v2
637,000,288
RS_GCF_000007465.2
Monoisolate
Complete Genome
Full
reference genome
Major
210,007
1,309
Streptococcus mutans UA159
strain=UA159
null
Bacteria
Firmicutes
Bacilli
Lactobacillales
Streptococcaceae
Streptococcus
Streptococcus mutans
true
Eubacteria
Firmicutes
1
1
0.9
1
2,032,925
1
36.83
2,032,925
1
1,897
591,301
85.692487
100
0
0
308
yes
yes
yes
20
high
1,471,600
0
TTACCAGTTAAAACAATTGTCATCCCAGTTAAAGCAGCATCACTTGCTGTTTTTTTGCCGAGATAAGTCAAGTTCAAACCTGCTGTTTTTAACTCTATCAAAAGTTTCTGTGCGCCTGCTGTTGCAAAGTAAGTTTTTAAAGACTCTGCA
92Streptococcus mutans UA159
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,302,800
1
ATATTACTATCCCCATCATACAGAAAACGACACTGAGGGTCATAGTGGAGCAGTAGCTTGCGCAACACCATAGTGGGGCAGTAGCTTGCTCAACACCATAGTGGGGCAGTAGCTTGCTCAGCATGAGAATACCCTGGACTCCAAAGCCCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,462,000
1
GTGTCCTCTGAGAAATGTGGACCGGAAGGATGAGGCATGCTCCCGGAAGTTAGCATCGCTCATGGCCCTCAGTCAGGGCATGGCAGAGGAACCACCCCTCTTGTAAAAGAGGCACACACAGCCCTCCTGCTGTAATCTGCCCCATGTCAC
120homo sapiens
G000008525
ASM852v1
GCF_000008525.1
PRJNA57787
SAMN02603995
null
1999/12/22
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/525/GCF_000008525.1_ASM852v1
637,000,132
RS_GCF_000008525.1
Monoisolate
Complete Genome
Full
reference genome
Major
85,962
210
Helicobacter pylori 26695
strain=26695
null
Bacteria
Proteobacteria
Epsilonproteobacteria
Campylobacterales
Helicobacteraceae
Helicobacter
Helicobacter pylori
true
Eubacteria
Proteobacteria
1
1
1
1
1,667,867
1
38.87
1,667,867
1
1,579
514,109
90.817493
99.36
0
0
275
yes
yes
yes
20
high
1,595,880
0
TCTAAATTGTGCGGCGTCTTTATTCAATAAAATATCTTTTTGATTTTGAAGCTCCACTTTAAAGGGAACAAGAAATCTTTGATTAAAAATTTCAATGACAGATTCCCATTCTTTCTGGTCTTTGCTAGCTTGTTTTATAATTTCTTCTAT
48Helicobacter pylori 26695 ASM852v1
G000007825
ASM782v1
GCF_000007825.1
PRJNA57975
SAMN02603340
null
2004/07/06
INRA
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/825/GCF_000007825.1_ASM782v1
637,000,017
RS_GCF_000007825.1
Monoisolate
Complete Genome
Full
reference genome
Major
226,900
1,396
Bacillus cereus ATCC 14579
strain=ATCC 14579
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus cereus
true
Eubacteria
Firmicutes
1
0.998
1
1
5,427,083
2
35.29
5,411,809
1
5,541
1,546,426
83.933929
98.18
0.58
18.18
383
yes
yes
yes
20
high
3,501,290
0
TAGTTCTCTCCACCATTTTCAGACCAGCTTGATCTGCTGCATTGTATAAAGTTGAAGATGTTTGACAAACACCACCGCCATATCCATCTACTAATTTACCATCAACTATTTCTTTCCCTAATTGATATCCTTTATCTGGTGTTGTATCAC
7Bacillus cereus ATCC 14579
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
737,550
1
TAGGGCCTGCCCCCAGGACAGCCTCAGGGAGCCCCTCGAACCCCAGTTAAATCACAGCCTAACCCCAAAACCCACTGGGCCAGGCCATTCTCATCTCCCCACTCCAGTCCATGCCCCACAGGGGTGAGGCACTTTCCCAGGGCAGTCGCT
120homo sapiens
G000010205
ASM1020v1
GCF_000010205.1
PRJNA224116
SAMD00060919
null
2008/05/29
Kitasato Institute for Life Sciences
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/205/GCF_000010205.1_ASM1020v1
642,555,145
RS_GCF_000010205.1
Monoisolate
Complete Genome
Full
na
Major
334,380
784
Orientia tsutsugamushi str. Ikeda
strain=Ikeda
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rickettsiales
Rickettsiaceae
Orientia
Orientia tsutsugamushi
true
Eubacteria
Proteobacteria
0.99
1
0.9
1
2,008,987
1
30.51
2,008,987
1
2,188
522,417
76.576503
99.51
0.49
0
186
yes
yes
yes
20
high
827,840
0
AAGTAGCATAGTTCAGGAAAAGCAAATAAAGTTTTTTATCCTATGGATATCTATTTACTTGGAAAAAGATAGCAAACAGATATCTTCGATATTACTTAGCTAAGTTAAACTATTTAACTTGCTGTAAAAACTTGCCAATATAACCTGTAA
72Orientia tsutsugamushi str. Ikeda
G000009925
ASM992v1
GCF_000009925.1
PRJNA58195
SAMD00061068
null
2004/09/16
Kitasato Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/925/GCF_000009925.1_ASM992v1
637,000,025
RS_GCF_000009925.1
Monoisolate
Complete Genome
Full
reference genome
Major
295,405
817
Bacteroides fragilis YCH46
strain=YCH46
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Bacteroidaceae
Bacteroides
Bacteroides fragilis
true
Eubacteria
Bacteroidetes
1
0.998
0.9
1
5,310,990
2
43.2
5,277,274
1
4,416
1,603,639
88.979964
99.26
0
0
347
yes
yes
yes
20
high
5,301,920
0
AGAAACCGAAGTACTGTCGGGATTCAAAGATAAAGAGGGGAACTCAATAGATAGAAAACTTATTGTAAATGATGATTTTAAGGTTAAGTTAGTATGAAAATAAGAATTGTAATTTACAATGAAGAGCTATTTCTTTCTGATAGTTTAGAC
10Bacteroides fragilis YCH46
G000008265
ASM826v1
GCF_000008265.1
PRJNA224116
SAMN02603345
null
2004/06/08
Institut of Microbiology and Genetics, University of Goettingen
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/265/GCF_000008265.1_ASM826v1
638,154,512
RS_GCF_000008265.1
Monoisolate
Complete Genome
Full
representative genome
Major
263,820
82,076
Picrophilus torridus DSM 9790
strain=DSM 9790
null
Archaea
Euryarchaeota
Thermoplasmata
Thermoplasmatales
Picrophilaceae
Picrophilus
Picrophilus torridus
true
Archaea
Euryarchaeota
0.99
1
0.8
0.9
1,545,895
1
35.97
1,545,895
1
1,599
485,076
92.441789
99.59
0
0
196
no
yes
yes
18
medium
1,340,690
0
GTTAATGATTTCAATAATTAATAATACACGAATCATCTATAAAAAAGAATAATCTATCGGCATTATAAAAATATTTATAACATAATATATTTTTTAATCATGGATGTAAAAATATCAATGGATACTGAAAACTGCAATAGCCTGATGATG
74Picrophilus torridus DSM 9790
G000006865
ASM686v1
GCF_000006865.1
PRJNA57671
SAMN02603339
null
2001/03/21
INRA
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/865/GCF_000006865.1_ASM686v1
637,000,144
RS_GCF_000006865.1
Monoisolate
Complete Genome
Full
reference genome
Major
272,623
1,358
Lactococcus lactis subsp. lactis Il1403
strain=IL1403
null
Bacteria
Firmicutes
Bacilli
Lactobacillales
Streptococcaceae
Lactococcus
Lactococcus lactis
true
Eubacteria
Firmicutes
1
1
1
1
2,365,589
1
35.33
2,365,589
1
2,383
693,662
86.378488
100
0
0
310
yes
yes
yes
20
high
98,150
0
CATTGTTCTATTGCAAAATGACCTTAGGAAAGTGACGACATCTATTGAAATCAGTCGTGATACGTTAAAAATTGCTAAACAAGCGGTCATGATTGGGATTATCATTTGTATTATTTTGATGTTTGTTGCAGCTCTGGGAGTGATTCCAGC
54Lactococcus lactis subsp. lactis Il1403 IL1403
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,847,250
1
ACGAAGACCTGACCACTGGCTCTGCGACGAGGTCACGGTAGCCTCCTGTTTAGGGTGTGTGTGGAGGCGGGGTTGCCTGGCAAGTAGGGGCTGAGGGGACCAGTGCAGCTCTAGGGACAAAAGGAAGGGGGTTCCTCAGAGGGCTGTTCT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,687,050
1
AGCCTCAACCTCCTGGGCGCAGGCCATTCTCTCACCTTAGCCTCCCCAGTAGCTGGGACCACAGGTGTGCGCCACAGCACCTGGCTAATTTTCTTGGTCACTCCTACTTGCGTCCCTGCTGCCTTCGGAGTGGCCGCTTCTCCTTGCCTT
120homo sapiens
G000007565
ASM756v2
GCF_000007565.2
PRJNA57843
SAMN02603999
null
2016/02/26
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/565/GCF_000007565.2_ASM756v2
637,000,222
RS_GCF_000007565.2
Multiisolate
Complete Genome
Full
reference genome
Major
160,488
303
Pseudomonas putida KT2440
strain=KT2440
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
Pseudomonas putida
true
Eubacteria
Proteobacteria
1
1
0.9
1
6,181,873
1
61.52
6,181,873
1
5,584
1,861,131
88.706707
99.97
1.2
0
381
yes
yes
yes
20
high
4,420,130
0
GCGAATACCACGACATCGAATGCATGTTCGGCTTCAAAGTTCGCCGGGCCTGACCCTCCCGCGCTGCCCGCCAGCGCCTTCCCCTATTCAACGATAACGCCTCCCCGGCGAGGACCACCAATGCCCATCACCTACGGAAGCGTCTGCAGC
78Pseudomonas putida KT2440
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,837,100
1
ATTGATTTTGGATGTCAACTTGACTAGATTAAGGAATACCCAGGTAGATGGTAAAGCATTGATTATTCTCTATGCTTCAGTACACACTGAGCCTGTCCCTTTTCTGCTGACAGGGAAGCCCAGTGGTTTGACATTGTGTAGAATGATCGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,139,450
1
GGAGCTGGGAATGAGTGGCCACCGAGAAAGGAATCGAGTCACAGCCAACAGAGTAAGCTGTGTCACGTGATCCCAGAACATCAACCGCAAACAAGAAGACAGAATTTTTCCATTGATTTTGGCAACAACGTAACAGTTATTTGTGTCTCC
120homo sapiens
G000006865
ASM686v1
GCF_000006865.1
PRJNA57671
SAMN02603339
null
2001/03/21
INRA
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/865/GCF_000006865.1_ASM686v1
637,000,144
RS_GCF_000006865.1
Monoisolate
Complete Genome
Full
reference genome
Major
272,623
1,358
Lactococcus lactis subsp. lactis Il1403
strain=IL1403
null
Bacteria
Firmicutes
Bacilli
Lactobacillales
Streptococcaceae
Lactococcus
Lactococcus lactis
true
Eubacteria
Firmicutes
1
1
1
1
2,365,589
1
35.33
2,365,589
1
2,383
693,662
86.378488
100
0
0
310
yes
yes
yes
20
high
1,211,990
0
TTCAGATGATATCTTGCTAATCCTAATTTCCCCTTTGTATATCCAAGAGAGGTGGAATGAATCACAAGAGGTAAGAAGGCAGTTCAGACTGGGGAGCCACTCTCCTCAAGTACGCTTTCTAAGGTTAGGAATATTTTAAAACAAATTTTT
54Lactococcus lactis subsp. lactis Il1403 IL1403
G000010825
ASM1082v1
GCF_000010825.1
PRJNA224116
SAMD00060943
null
2009/08/26
Acetobacter pasteurianus genome sequencing consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/825/GCF_000010825.1_ASM1082v1
644,736,321
RS_GCF_000010825.1
Monoisolate
Complete Genome
Full
representative genome
Major
634,452
438
Acetobacter pasteurianus IFO 3283-01
strain=IFO 3283 substr. IFO 3283-01
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhodospirillales
Acetobacteraceae
Acetobacter
Acetobacter pasteurianus
true
Eubacteria
Proteobacteria
1
0.982
0.9
1
3,340,249
7
53.1
2,907,495
1
3,156
1,006,859
88.810714
100
0
0
352
yes
yes
yes
20
high
1,009,060
0
ATATCTGCGGCAGCCTGATCCAATGCTTCAAACAGGCGTGTGCCGTCATGCCCGTTCTGGCGCACTGTAATGGTGCGGATATTCAACCCATCCACCTGCATATGCGCCAATGCATCCGCAGCCTGCCGGGCAATAGCCGCCCGCTGCCCG
0Acetobacter pasteurianus IFO 3283-01 IFO 3283 substr. IFO 3283-01
G000007085
ASM708v1
GCF_000007085.1
PRJNA224116
SAMN02603009
null
2002/05/14
Beijing Center.HGP
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/085/GCF_000007085.1_ASM708v1
637,000,318
RS_GCF_000007085.1
Monoisolate
Complete Genome
Full
representative genome
Major
273,068
911,092
Caldanaerobacter subterraneus subsp. tengcongensis MB4
strain=MB4
null
Bacteria
Firmicutes
Clostridia
Thermoanaerobacterales
Thermoanaerobacteraceae
Caldanaerobacter
Caldanaerobacter subterraneus
true
Eubacteria
Firmicutes
1
1
1
1
2,689,445
1
37.57
2,689,445
1
2,674
812,453
88.995016
99.04
0.6
0
329
yes
yes
yes
20
high
2,054,130
0
TTTCGCCTAAAATTTCAAAAGGATTTTCAATGACAAGCTCTAAATGCTCTGGAGCTATTTCATTTGCAATACCAATTGCTTCTTTTAAATTATCTATAACAATTATCGCGCCAAAATTTTTTAAAGACTCTGCAATTATTTCTTTTCGCT
18Caldanaerobacter subterraneus subsp. tengcongensis MB4
G000007805
ASM780v1
GCF_000007805.1
PRJNA57967
SAMN02604017
null
2003/03/05
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/805/GCF_000007805.1_ASM780v1
2,508,501,074
RS_GCF_000007805.1
Multiisolate
Complete Genome
Full
reference genome
Major
223,283
251,701
[Pseudomonas syringae] pv. tomato str. DC3000
strain=DC3000
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
Pseudomonas syringae group genomosp. 3
true
Eubacteria
Proteobacteria
1
0.997
0.9
1
6,538,260
3
58.34
6,397,126
1
5,862
1,948,843
87.825109
100
0.22
0
381
yes
yes
yes
20
high
1,611,480
0
CGTCGCAAAGAGGACGCTGAGCATCCTGAACGGCATGTCGACGCGGAGCGTCGCACGATAGTGGTCGTAGCTGAGATTCTCGTTCCCTACGCTCCAGCGTGGGAATGCAGTTCTCGACGCTCTGCGTCGCAAAGAGGACGCTGAGCATCC
119[Pseudomonas syringae] pv. tomato str. DC3000
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,645,950
1
CGGACCCAGACGGAACAATGAAATGGAATAATAATGGAAATGGAAATAATGTAAATGGAATAATATAAATAATATAATGTATTATAATATAAATAATAATAATATATTCAATAATATAAATGGAAATCAAAGCCATGAGAGCAAATGGAA
120homo sapiens
G000006725
ASM672v1
GCF_000006725.1
PRJNA224116
SAMN02603773
null
2004/06/04
Sao Paulo state (Brazil) Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/725/GCF_000006725.1_ASM672v1
637,000,348
RS_GCF_000006725.1
Monoisolate
Complete Genome
Full
representative genome
Major
160,492
2,371
Xylella fastidiosa 9a5c
null
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xylella
Xylella fastidiosa
true
Eubacteria
Proteobacteria
0.98
0.993
0.9
1
2,731,750
3
52.62
2,679,306
1
2,664
765,931
82.59299
99.59
0.18
0
325
yes
yes
yes
20
high
299,780
0
GCTGCATATTCGCGACCATATTTCTGTGGGTCAGCATTGCGCCTTTGGGTGTCCCCGTTGTGCCGCCGGTGTATTGTAGAAAAGCTAAATCGTCGCTGGCGATGTGGATTGGAGGCATGGAATGCTTGCTTCCCAGCGCGAGTGCTTCAC
114Xylella fastidiosa 9a5c
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,100,650
1
GTTGTGGGCTCTGGAAGCCCCGGTCATGAGGCCCCACCGCCCCGCCCGGCACTAAGTAAGTGGCTCTCAGGGAAATCATAACACGATTAGCAGCTTCCGGCCAGTCTCACGGGCGTTAGCCTACTCCTCGCTCCTACACAAACACGGCAG
120homo sapiens
G000009065
ASM906v1
GCF_000009065.1
PRJNA57621
SAMEA1705942
null
2003/05/06
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/065/GCF_000009065.1_ASM906v1
637,000,351
RS_GCF_000009065.1
Monoisolate
Complete Genome
Full
reference genome
Major
214,092
632
Yersinia pestis CO92
strain=CO92
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Yersiniaceae
Yersinia
Yersinia pestis
true
Eubacteria
Proteobacteria
1
0.994
1
1
4,829,855
4
47.64
4,653,728
1
4,298
1,371,586
83.669593
99.82
0
0
372
yes
yes
yes
20
high
724,230
0
CTATTGCCTGCGTTAGTACTGGGTTAAGTTCATGACGGTGATACCAGTAAAAGCGTGATTACCAAACCGTTATAGGGTAAAAACAGAATTCAGGCGCGTTACTTAAGTAAAGAGAGAAGTATATGACATCAAAGCAATCCTCACCGGTGA
116Yersinia pestis CO92 ASM906v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,593,800
1
CTAGGATCTCAAAGGAGTTAAAAGCGGGACTATTTCTAAACATAAGGCACTATGTAATTGGAAAGTGTGGCTGTTAACACTGTTTCCCTCCTAAAACTCATTGAGGAGTGGCTCTCAGAGGGTGAATGCTCACCACGCCCATGTGTGTGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,504,500
1
TCAGGTAGTCATGAGACTCAGGTAAAAGGATGCATGCGAAGCTCATATCTGGCCCCCCTGACTGTCGCTTCCCTTCCTTCAGTGACAGCTGTTCGGAGACTCTCTCGTGTGTCCAACATTGCAGGTACGAGAGATCCTTGATGCTACCTC
120homo sapiens
G000010125
ASM1012v1
GCF_000010125.1
PRJNA224116
SAMD00061076
null
2005/08/12
Kitasato Institute for Life Sciences, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/125/GCF_000010125.1_ASM1012v1
637,000,284
RS_GCF_000010125.1
Monoisolate
Complete Genome
Full
representative genome
Major
342,451
29,385
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
strain=ATCC 15305
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Staphylococcus
Staphylococcus saprophyticus
true
Eubacteria
Firmicutes
1
0.992
1
1
2,577,899
3
33.19
2,516,575
1
2,502
730,892
83.519176
99.44
0
0
348
yes
yes
yes
20
high
130,910
0
ATAAAAATCGTATCTTCCAATCAGGATATGTTTATAGATTTGTGAAAGAGAATCGTCATTCTAATCAGGTATTAACTTTGACAAATTCAGACCAAATCCCGCATTTAGAAGAAATCGTACAAGCCCATCCAAATCTAGAGTTTCATGTTG
90Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 ASM1012v1
G000005825
ASM582v2
GCF_000005825.2
PRJNA224116
SAMN02603086
null
2010/12/15
Center for Genomic Sciences, Allegheny-Singer Research Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/825/GCF_000005825.2_ASM582v2
646,311,908
RS_GCF_000005825.2
Monoisolate
Complete Genome
Full
representative genome
Major
398,511
79,885
Bacillus pseudofirmus OF4
strain=OF4
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus pseudofirmus
true
Eubacteria
Firmicutes
1
0.995
1
1
4,249,248
3
39.86
3,858,997
1
4,260
1,228,222
85.144124
98.68
1.32
0
377
yes
yes
yes
20
high
2,008,240
0
ACCTGTTGTAAGAAGTGTTAGTCCGATAATGATCAGTAAATAATTTGTATATTCAACGTTTTGAGTGATAATTCCGTACCCGGCCAAACTAACCCCAGCAACAACCAACACAATCCTTAGTTTGTTAAGAATACAAATTCCCCTCCTATA
9Bacillus pseudofirmus OF4
G000008865
ASM886v1
GCF_000008865.1
PRJNA57781
SAMN01911278
null
2004/05/11
GIRC
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/865/GCF_000008865.1_ASM886v1
637,000,108
RS_GCF_000008865.1
Monoisolate
Complete Genome
Full
reference genome
Major
386,585
562
Escherichia coli O157:H7 str. Sakai
strain=Sakai substr. RIMD 0509952
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Enterobacteriaceae
Escherichia
Escherichia coli
true
Eubacteria
Proteobacteria
1
0.996
0.9
1
5,594,477
3
50.48
5,498,450
1
5,399
1,663,868
87.620737
99.97
0.33
0
374
yes
yes
yes
20
high
1,180,010
0
TAATATCCGACAGTAATCACTCTGCGCAATAGCGCGGCCTTTTTCGTATTGCGGGCTGTTGTCTCTCTTCTGCCATTGTCCTGTAACTTCCGGACTTCAGCCCGCTCCTCATTTTACTCACAATATTATCCCGGCCGGGAGGATTCATGG
38Escherichia coli O157:H7 str. Sakai Sakai substr. RIMD 0509952
G000009025
ASM902v1
GCF_000009025.1
PRJNA224116
SAMEA3138187
null
2005/08/19
Max Planck Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/025/GCF_000009025.1_ASM902v1
637,000,090
RS_GCF_000009025.1
Monoisolate
Complete Genome
Full
na
Major
255,470
61,435
Dehalococcoides mccartyi CBDB1
strain=CBDB1
null
Bacteria
Chloroflexi
Dehalococcoidia
Dehalococcoidales
Dehalococcoidaceae
Dehalococcoides
Dehalococcoides mccartyi
true
Eubacteria
Chloroflexi
0.97
1
1
1
1,395,502
1
47.03
1,395,502
1
1,437
426,285
89.985038
99.01
0
0
259
yes
yes
yes
20
high
638,820
0
CCTGTCCCACAGAATACCCGCTATAAGGCTGGCGGGAAGCAGAGTCAGCCCGACTACACCCTGATACAAACCATAGGCAGTCCCCCGTTTATCAGACGGTATCATATCTGCCACAAAAGCCTTTGCCACCCCTTCCACAATCCCGTAGTA
34Dehalococcoides mccartyi CBDB1
G000008565
ASM856v1
GCF_000008565.1
PRJNA57665
SAMN02603976
null
2000/12/11
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/565/GCF_000008565.1_ASM856v1
637,000,092
RS_GCF_000008565.1
Monoisolate
Complete Genome
Full
reference genome
Major
243,230
1,299
Deinococcus radiodurans R1
strain=R1
null
Bacteria
Deinococcus-Thermus
Deinococci
Deinococcales
Deinococcaceae
Deinococcus
Deinococcus radiodurans
true
Eubacteria
Terrabacteria
1
0.991
0.8
1
3,284,156
4
66.61
2,648,638
1
3,248
987,980
88.625967
98.72
0
0
359
yes
yes
yes
20
high
1,507,610
0
AGCGCCACGAGGATTTGCAGCACCGAGTGCCACCCTGGCCCCGCCGCGAGCGCCCCGCCGAAGACCCGCAGCATCCCGGCGAAGGCGGCCACCTTGACCACCGTGCTCAGGAACAGCGACACCAGCGTGGGCGCCCCGCTGTACACGTCG
35Deinococcus radiodurans R1 ASM856v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,520,150
1
AAAATAGGTGGAAAGTCCCAGACCTAATGTGGAGGCTGGGGAAGCAGCCGGGCCGGGGAGGGCGGGGGCGGGGGCCTGTGTGTTTTTGCAGGACATGCACAAGGGTAAGAGGCTGTGCCCGGGGTGCTGTGACTGTGCCTTGTGACAGCA
120homo sapiens
G000010325
ASM1032v1
GCF_000010325.1
PRJNA224116
SAMD00060914
null
2007/07/11
Japan Agency for Marine-Earth Science and Technology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/325/GCF_000010325.1_ASM1032v1
640,753,037
RS_GCF_000010325.1
Monoisolate
Complete Genome
Full
representative genome
Major
387,092
387,092
Nitratiruptor sp. SB155-2
strain=SB155-2
null
Bacteria
Proteobacteria
Epsilonproteobacteria
null
null
Nitratiruptor
Nitratiruptor sp. SB155-2
true
Eubacteria
Proteobacteria
1
1
1
1
1,877,931
1
39.69
1,877,931
1
1,933
610,396
95.761026
98.78
0
0
319
yes
yes
yes
20
high
870,220
0
AATGAGGCAACTAAAATGATTTTACCTAAATAGTTGTTGTTGTCATCATATATGGATAGAGGGAAGTACAGATCAAAATCATCAAATGTAGGAGAATTGATAGATTGATGATGAAGAGGAAAAGATCTAGGATATAAAATTTGTCCATCA
68Nitratiruptor sp. SB155-2 ASM1032v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,961,700
1
ATTAAATTAATGTGTTCAAAAGTTCCTCATGCTATTGCTTGAGCCCACCCCCTGTCATAGTCCCCCAAGCCTTGTGCCTCAGCCTCACTGGTCTGCCTAGATACTGGTCCTCACCTCTCCACCTTTGGGATGGCACGTGGACCTGGTGCA
120homo sapiens
G000010305
ASM1030v1
GCF_000010305.1
PRJNA224116
SAMD00060909
null
2009/04/01
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/305/GCF_000010305.1_ASM1030v1
643,692,024
RS_GCF_000010305.1
Monoisolate
Complete Genome
Full
representative genome
Major
379,066
173,480
Gemmatimonas aurantiaca T-27
strain=T-27
null
Bacteria
Gemmatimonadetes
Gemmatimonadetes
Gemmatimonadales
Gemmatimonadaceae
Gemmatimonas
Gemmatimonas aurantiaca
true
Eubacteria
FCB
1
1
1
1
4,636,964
1
64.27
4,636,964
1
4,004
1,466,180
93.177023
98.9
4.4
0
353
yes
yes
yes
20
high
1,729,910
0
TGCGGTATGGGCGGCGGCACGGGTACTGGTGCGGCGCCAGTGGTGTGCCAGTTGGCGCGTGAGGCCGGTGCGCTCACCGTGGGTATCGTCACCCGCCCGTTCCTCTTCGAAGGGCGCAAGCGGATGCGTCAGGCCGAAGAGGGCATCAAC
42Gemmatimonas aurantiaca T-27
G000007385
ASM738v1
GCF_000007385.1
PRJNA224116
SAMN02603680
null
2005/02/02
NIAB, Rural Development Administration
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/385/GCF_000007385.1_ASM738v1
637,000,346
GB_GCA_000007385.1
Multiisolate
Complete Genome
Full
representative genome
Major
291,331
347
Xanthomonas oryzae pv. oryzae KACC 10331
null
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xanthomonas
Xanthomonas oryzae
true
Eubacteria
Proteobacteria
1
1
0.9
1
4,941,439
1
63.69
4,941,439
1
4,831
1,427,680
85.113992
99.82
0
0
355
yes
yes
yes
20
high
1,544,660
0
GCGCGTAATTGGTAAGCCATGACCTGCATCAGGCTATCGGGTACCGGGTCGCGCCGCGCCTGTAACGCATTAGCCACCATGACGGTGGCGACCAGGCCGATCAGCACGCCCAGCACCAGCATGAAGGCGTAGCGGGCCGCGCGGGATTGG
113Xanthomonas oryzae pv. oryzae KACC 10331
G000007845
ASM784v1
GCF_000007845.1
PRJNA57909
SAMN02603432
null
2003/04/30
J. Craig Venter Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/845/GCF_000007845.1_ASM784v1
637,000,014
RS_GCF_000007845.1
Monoisolate
Complete Genome
Full
reference genome
Major
198,094
1,392
Bacillus anthracis str. Ames
strain=Ames
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus anthracis
true
Eubacteria
Firmicutes
1
1
1
1
5,227,293
1
35.38
5,227,293
1
5,474
1,495,110
84.244541
99.23
0.15
0
381
yes
yes
yes
20
high
5,212,740
0
GCAGCACGAGTAATAAAGCAAATATGACATATAGGTTAGAAAATACCATATGTAAATATGATGTCGGTTCTACTTTTATAAAAGTTGATAATAAAATAAATATAACGTAATACCAAACAATACTTTTCGGTAATTGTATATCTTTAAATT
5Bacillus anthracis str. Ames
G000009925
ASM992v1
GCF_000009925.1
PRJNA58195
SAMD00061068
null
2004/09/16
Kitasato Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/925/GCF_000009925.1_ASM992v1
637,000,025
RS_GCF_000009925.1
Monoisolate
Complete Genome
Full
reference genome
Major
295,405
817
Bacteroides fragilis YCH46
strain=YCH46
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Bacteroidaceae
Bacteroides
Bacteroides fragilis
true
Eubacteria
Bacteroidetes
1
0.998
0.9
1
5,310,990
2
43.2
5,277,274
1
4,416
1,603,639
88.979964
99.26
0
0
347
yes
yes
yes
20
high
2,556,190
0
ATGGAAGTGCCGTATATGACCAGAGGCTTTTCTTGTGAAACCGGAAGAAAACGGAAAGAAGCGTCGGCAGGAACACCTATCTCCATCCATGATACACTGTTGTATAGCGGCAGGAATAGTTGGTATTCAAATCCGTTGCCGGATTTAGCC
10Bacteroides fragilis YCH46
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,281,700
1
CTACTCTCAGCAAAACGGGGGACGGGCATCAGAGACCAGCAGTAACTGCCACAACCCATCCTGAGCGCTGTGGAGAGGGGACAAGCCGCTCAGGGCACGAAGATTCTCCCACAGCAGGAGCCCAGCCCCGGCTTTGTCCAGCTTGGTCCC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,217,100
1
TCCTAACCAGTCTTCCCACCTCCTTCCACCTGGGCTGCCTGGTCTTCCATCACCTGGTCAACATGGACTCGGCATCTGCTGGGTGCCAGGCACTGTTCTGGGCTCTGGGGAATCCTTATTCTCCTGTAGTTTCTATTCTAGCGGGGGAGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
230,250
1
GACAGAATTCCAACAGCGGCCGTGTGGCTGCAGAGCCTCTCTCCCTCCCTGCCTCACCCTCGAGTCCCCGCCTGGGAGGGCTCAGGGTCACTCACTAAGCATCTTTCCCATGCGCTGCTGTGAGGCTGCTGCTATTAACTTGCTACTATG
120homo sapiens
G000007865
ASM786v1
GCF_000007865.1
PRJNA224116
SAMN02604086
null
2004/01/30
Univ. Minnesota
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/865/GCF_000007865.1_ASM786v1
637,000,168
RS_GCF_000007865.1
Monoisolate
Complete Genome
Full
representative genome
Major
262,316
1,764
Mycobacterium avium subsp. paratuberculosis K-10
strain=K-10
null
Bacteria
Actinobacteria
Actinobacteria
Corynebacteriales
Mycobacteriaceae
Mycobacterium
Mycobacterium avium
true
Eubacteria
Actinobacteria
1
1
1
1
4,829,781
1
69.3
4,829,781
1
4,544
1,497,326
91.345322
99.28
0.33
0
336
yes
yes
yes
20
high
2,794,870
0
GCACCAACGCGCGCGTCGCCGAGCTGCTCGAGACTGTGGGGCTGCCGCGGGCCGACGCGGCCCGCTACCCCGCGGAGTTCTCCGGCGGCCAGAAACAGCGCATCGGTATCGCGCGAGCGCTGGCGCTGCAACCGAAGATCCTCGCGCTCG
65Mycobacterium avium subsp. paratuberculosis K-10
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,417,700
1
CAGATGTATGTCCATACACCCACCTACATGTGTACCCACACATGACGTACATGTACACACACTCCTGATGACCTCTCCCAGGACCCAGGGCCCAAGGCCCCTCCAGCCTTCAGACACATTCTGTGTCCTGGGACCGGGATTCTCAATGGC
120homo sapiens
G000006845
ASM684v1
GCF_000006845.1
PRJNA57611
SAMN02604088
null
2005/02/14
Univ. Oklahoma
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/845/GCF_000006845.1_ASM684v1
637,000,188
RS_GCF_000006845.1
Monoisolate
Complete Genome
Full
reference genome
Major
242,231
485
Neisseria gonorrhoeae FA 1090
strain=FA 1090
null
Bacteria
Proteobacteria
Betaproteobacteria
Neisseriales
Neisseriaceae
Neisseria
Neisseria gonorrhoeae
true
Eubacteria
Proteobacteria
1
1
1
1
2,153,922
1
52.69
2,153,922
1
2,142
609,210
83.31778
99.82
0.21
0
323
yes
yes
yes
20
high
417,820
0
CGTTTTGCGAGGCGGCGAACCTGCCGTGTGCCAAGCCTTGTTTGAACGTGCCCGACAATGCCATATTGCGGAATTTGGTACTGTCGGAATTGAACGGCTCGAGAAATACTTCGCGGCCGGCGGCAACGGTATAAACGCCTTGCCCGTCGA
66Neisseria gonorrhoeae FA 1090
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,658,400
1
TTGCTACCTTAAACTCATTTCCTGATTGGATCAACCCCCCCACTCCAGTGCTTGTCCCTCACTCCCTTGCGCTCTGGCCAGGGCAGCCCCTGGGATGGCTCTGAGCCCTGGGTTCTGCCCTGAGGATTCAGCTCCAGGTGCCCAGCGGTA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
479,250
1
TGGGGACGGGGCCGGGCGATGGTCCTGAGCACCTGCTCCTGCCCTCAGGTTTGACACAGGTTCGGGGCCGGCGGTGCTGACCAGTGCCGTGCCGGTAGAGCCGGGCCAGTGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCAC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,264,750
1
CGCGCACACACACACGCGCACAAACACACACGCACGCACACACACGCACACACACACACGCACGCACACACACACGCACACACTCACACACACACACGCACGCACACGCACGCACACACACACAAACTACTATGTTTGCTGGGCCTGAAT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,803,600
1
TTTTTCATGTGTTTTTTGGTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTA
120homo sapiens
G000008345
ASM834v1
GCF_000008345.1
PRJNA224116
SAMN02603281
null
2004/07/30
Goettingen Genomics Laboratory
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/345/GCF_000008345.1_ASM834v1
637,000,215
RS_GCF_000008345.1
Monoisolate
Complete Genome
Full
representative genome
Major
267,747
1,747
Propionibacterium acnes KPA171202
strain=KPA171202
null
Bacteria
Actinobacteria
Actinobacteria
Propionibacteriales
Propionibacteriaceae
Cutibacterium
Cutibacterium acnes
true
Eubacteria
Actinobacteria
1
1
1
1
2,560,265
1
60.01
2,560,265
1
2,373
780,330
89.799572
100
0
0
319
yes
yes
yes
20
high
735,020
0
TGGCCGACTGACGCCGCCGCGAGAACTACGAGAGAGTCAGCAAGAGAGAACTTATTGAGGATGGCGAATCCAGCGCACGCGACGCCACCAGCGAGAACCGTTTGCCATTCTGCCCACTTGGGACGCACCGTACGTGAAATGTAATCCAAT
77Propionibacterium acnes KPA171202
G000006965
ASM696v1
GCF_000006965.1
PRJNA57603
SAMEA3283068
null
2003/05/06
MELILO
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/965/GCF_000006965.1_ASM696v1
637,000,269
RS_GCF_000006965.1
Monoisolate
Complete Genome
Full
reference genome
Major
266,834
382
Sinorhizobium meliloti 1021
strain=1021
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhizobiales
Rhizobiaceae
Sinorhizobium
Sinorhizobium meliloti
true
Eubacteria
Proteobacteria
1
0.997
0.1
1
6,691,694
3
62.17
3,654,135
1
6,303
1,956,944
86.157242
99.28
0.31
0
373
yes
yes
yes
20
high
2,501,720
0
GCGCATTCACGCATTCATGTGCGGCCTCGGGACGCAAAGTATAAAGCAATTCGAGGAAAATGACGTACGGTTTTGCGCCGGGAGTAGAGCCGAAATAACAAAGCCGGGCACTGGGCCCGGCTTTGTCGTCGATGAAAAGGTCCAGGGATC
86Sinorhizobium meliloti 1021
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,618,800
1
TAGCGGAGACGGGGTTTCACCCTGTTAGCCAGGACGATCCACGAGCATTTTTATGGATTCCTTTCTTTTTTTTACATGACTCCATCTTTTTTTGGATGTGCTTCACAGTAAGTTGCAGTGGTCAGTACACTTTGTCCCTGAACACTTCAA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,271,700
1
ATGGCTGTCATCTAGCTATTGTAAAGGGCATATGTATGAAATATAGCCAGTGCAACTCAGGAACTGGGTTTCTAATTTTATTTAAGTTTAAATAGCCATTGGATAGAGCAGCTTTTTGAAAGTGGCCTTCACTGAAACAGAGTTCATGCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,869,650
1
CGGAAGGAAGCAGCATGTTTTCGGGGACCCTGTGGTTTCTGGGTGCTGCTGTTCCCACCTGGCGAGCGCTGCCTTCTGCACGCTGCCAGGGCTGTGTGTGTACGCCGTCCCTCATTCCCTCGTGCAGCCTGGGAAAGCCTTACCCAGTGC
120homo sapiens
G000006925
ASM692v2
GCF_000006925.2
PRJNA62907
SAMN02603599
null
2011/08/03
Microbial Genome Center of ChMPH
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/925/GCF_000006925.2_ASM692v2
637,000,264
RS_GCF_000006925.2
Monoisolate
Complete Genome
Full
reference genome
Major
198,214
623
Shigella flexneri 2a str. 301
strain=301
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Enterobacteriaceae
Shigella
Shigella flexneri
true
Eubacteria
Proteobacteria
1
0.998
1
1
4,828,820
2
50.65
4,607,202
1
5,003
1,415,151
86.329724
99.7
0.21
0
372
yes
yes
yes
20
high
1,763,320
0
TGATAATAAGATCATATTAGAGAACTTGAACTTTCATGTTTCGCCAGGCAAATGGCTATTACTGAAAGGCTACTCTGGTGCGGGAAAAACCACACTGCTTAAAACATTATCCCACTGCTGGCCGTGGTTTAAAGGTGATATTTCTTCTCC
85Shigella flexneri 2a str. 301
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
382,800
1
GCCCAGGTAAGCCTTGATGTCCACACGAAGCTTCCCCCAGAGCGGGCTGCTGGACGGCTGCAGCATCCTGCAGAGAGACCACCCACCCCTGGCTGGGAGGCCCCACGGCTCGGACGCGAGGCTGCTCAGCATGTTGGCGCGTGCCCTGGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,244,350
1
GAGAATTGTTTGAACCTGGGAGGCGGGGATTGCAGTGAGCGGAGATTGTGCCAGTGCACTCCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAATCCAATAAGATATGAGAGCCAATTATGTTCACAAGAT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,927,400
1
CTGAAGCGAGTTAAAGCTGGGTCTCTCTCACCTGCAGCAACCAAGCAGTCAGACCCCCCTCCTCCTGAAGGACCCGAAGGACCCCTCCCAGAGGCAGAACTGGCTTTCCTGGGACCCTGAGAGAGGGAGGATGTTGCCCATGGCATTGAA
120homo sapiens
G000010165
ASM1016v1
GCF_000010165.1
PRJNA224116
SAMD00060942
null
2009/04/01
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/165/GCF_000010165.1_ASM1016v1
643,692,011
RS_GCF_000010165.1
Monoisolate
Complete Genome
Full
representative genome
Major
358,681
1,393
Brevibacillus brevis NBRC 100599
strain=NBRC 100599 (= 47)
null
Bacteria
Firmicutes
Bacilli
Bacillales
Paenibacillaceae
Brevibacillus
Brevibacillus brevis
true
Eubacteria
Firmicutes
1
1
1
1
6,296,436
1
47.27
6,296,436
1
5,917
1,875,522
87.757979
99.73
0.27
0
381
yes
yes
yes
20
high
3,798,470
0
CTCCGAGCGATAAATCGTCCAGATAATACAGCTCAAGATATTCTCGCTGCTTGCCCTTGAGTAGCGGCGCGTAAAAGTCAAACAAGAGATTGACTTGATTGGTCTTTTCTAACATGAAACCAATCCTTTGCTATGAGGTACTCGTTTCAA
15Brevibacillus brevis NBRC 100599
G000009765
ASM976v2
GCF_000009765.2
PRJNA224116
SAMD00061088
null
2016/03/24
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/765/GCF_000009765.2_ASM976v2
637,000,304
RS_GCF_000009765.2
Monoisolate
Complete Genome
Full
representative genome
Minor
227,882
33,903
Streptomyces avermitilis MA-4680 = NBRC 14893
strain=MA-4680
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces avermitilis
true
Eubacteria
Actinobacteria
1
0.999
1
1
9,119,895
2
70.7
9,025,608
1
7,915
2,675,970
86.456522
99.89
0.79
0
356
yes
yes
yes
20
high
1,174,030
0
CGGTTGTCGTGGTGGGTGGTTGGAGCCAGTAGTGCTGGTGTTGGAAGGGGTAGGTGGGCAGGTCGAGGTGGTGGTTGTGGGGGTGGGGGTGGGTTTGGGTGTAGTGGTGGTGCCAGGTGGTGGGTGTCCGAATGCCGGTGGTGTGGGTGT
95Streptomyces avermitilis MA-4680 = NBRC 14893 MA-4680 ASM976v2
G000009245
ASM924v1
GCF_000009245.1
PRJNA224116
SAMEA3138197
null
2006/03/02
LLNL
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/245/GCF_000009245.1_ASM924v1
637,000,111
RS_GCF_000009245.1
Monoisolate
Complete Genome
Full
na
Major
376,619
263
Francisella tularensis subsp. holarctica LVS
strain=LVS
null
Bacteria
Proteobacteria
Gammaproteobacteria
Thiotrichales
Francisellaceae
Francisella
Francisella tularensis
true
Eubacteria
Proteobacteria
1
1
0.9
1
1,895,994
1
32.15
1,895,994
1
2,100
571,581
88.799806
99.82
0.41
100
311
yes
yes
yes
20
high
1,713,140
0
GATACCTTTGTTTTTTAACTCTTGTGCCATTGCCTCAGCAGTTTTTCTGAGTCCTTGTGGATCTGCAAGCAAAGGAGTAATGTCGCGAAACATAATTCCTGGTTTTGGAAAATCAGGCACAGCTGCAATCTTACTCTTAATAAAATCTAA
40Francisella tularensis subsp. holarctica LVS ASM924v1
G000009925
ASM992v1
GCF_000009925.1
PRJNA58195
SAMD00061068
null
2004/09/16
Kitasato Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/925/GCF_000009925.1_ASM992v1
637,000,025
RS_GCF_000009925.1
Monoisolate
Complete Genome
Full
reference genome
Major
295,405
817
Bacteroides fragilis YCH46
strain=YCH46
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Bacteroidaceae
Bacteroides
Bacteroides fragilis
true
Eubacteria
Bacteroidetes
1
0.998
0.9
1
5,310,990
2
43.2
5,277,274
1
4,416
1,603,639
88.979964
99.26
0
0
347
yes
yes
yes
20
high
4,905,290
0
TAAATATTTTGTTTTATCTTCTTCCGTAATTTCCCGAATCACGCGACAAGGATTACCCGCAGCAATCACATTGGCAGGAATATCTCTATTTACTACACTTCCCGCACCTATCACTGTGTTGTCACCAATCGTCACGCCCGGTAATACGCA
10Bacteroides fragilis YCH46
G000009305
ASM930v1
GCF_000009305.1
PRJNA224116
SAMEA3138199
null
2006/06/28
Penn State Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/305/GCF_000009305.1_ASM930v1
637,000,130
RS_GCF_000009305.1
Monoisolate
Complete Genome
Full
representative genome
Major
382,638
212
Helicobacter acinonychis str. Sheeba
strain=Sheeba
null
Bacteria
Proteobacteria
Epsilonproteobacteria
Campylobacterales
Helicobacteraceae
Helicobacter
Helicobacter acinonychis
true
Eubacteria
Proteobacteria
1
0.994
0.9
1
1,557,588
2
38.17
1,553,927
1
1,547
470,618
89.011857
99.12
0.7
100
271
yes
yes
yes
20
high
515,580
0
AAGCGTTGTGTTGCCAGGAGTTGAAGGGGAATTTGGGGTTCTTTATGGGCATAGCAACATGATCACTTTGCTCCAAGCGGGAGTGATTGAGATTGAAACCGAGAGTCAAAAAGAACACATTGCGATTAGTTGGGGCTATGCAGAAGTCAC
46Helicobacter acinonychis str. Sheeba
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
696,000
1
TTCTCCTGCCTCGGCTTCCCGAGTAGCTGGGACTACAGGTGTGCGCCATCATGCCCAGCTAATATTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGACCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTGAGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,926,600
1
ACATGAATGAAAGTTTAATGGCATCAAATCAACTATGGATTACTAGTATCCAGGTAAAAGTAAAAACTATATAGAGTTGAAAATGTTGCTAAGAAAATATATTAACATATAAAAATACCTTTTAAAACTTCCTTCATTTTTTGTTTATAA
120homo sapiens
G000009185
ASM918v1
GCF_000009185.1
PRJNA224116
SAMEA3138195
null
2006/06/22
Max Planck Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/185/GCF_000009185.1_ASM918v1
637,000,129
RS_GCF_000009185.1
Monoisolate
Complete Genome
Full
na
Major
362,976
293,091
Haloquadratum walsbyi DSM 16790
strain=DSM 16790 = HBSQ001
null
Archaea
Euryarchaeota
Halobacteria
Haloferacales
Haloferacaceae
Haloquadratum
Haloquadratum walsbyi
true
Archaea
Euryarchaeota
1
0.997
0.9
1
3,179,361
2
47.86
3,132,494
1
3,071
845,315
78.317152
99.3
0
0
220
no
yes
yes
19
medium
2,913,170
0
GTCCGATCAACGGGTGATCCAACAGCAAATGCAACAGGCGCACTGGGTGTGTTTGTCTCTGTCTATGAATTTCTCAATATTCCATTCACCCTGGCGACAGTCGTCGGTGGTGTGATGAGTGTCTTGACTATTCGCTATATTTCGAGTTTT
45Haloquadratum walsbyi DSM 16790 DSM 16790 = HBSQ001

Dataset Card for "autotrain-data-species_classify"

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