Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_031761.1
112,602
112,617
CACGGCAA
8
2
16
17
NC_031761.1
113,719
113,756
CCACTTACGGAACGCGTGC
19
2
38
18
NC_031761.1
119,786
119,803
CAGATTATT
9
2
18
19
NC_033464.1
103
272
TTTTGGCCTCATGCCAAATATCCCCTCATCCATA
34
5
170
0
NC_033464.1
1,518
1,535
ATAAAGAAA
9
2
18
1
NC_033464.1
9,860
10,339
GACCAGGTTCGGGTTC
16
30
480
2
NC_033464.1
35,394
35,409
CTGCTATT
8
2
16
3
NC_033464.1
71,971
72,180
AGTCTCGTCCTCCC
14
15
210
4
NC_033464.1
72,250
72,267
TATTTACAC
9
2
18
5
NC_033464.1
94,150
94,165
GTATCCAA
8
2
16
6
NC_033464.1
120,359
120,484
TGCTTGCCCTGGATGTATGCCCAGGAACTGTGGTAATGACAA
42
3
126
7
NC_033464.1
122,612
122,647
TGTTTGTTTAGGTAGGCC
18
2
36
8
NC_033464.1
122,648
122,967
TCTCAGGTAGGCCTCTTAGGCCTGTTTGTTTAGGTAGGCC
40
8
320
9
NC_033464.1
126,530
126,545
AACTTTTT
8
2
16
10
NC_033464.1
127,795
128,036
GGGTCTCACATTAATTAAATTA
22
11
242
11
NC_033464.1
128,666
128,743
AGGATGGAAAGGTGGGGAGTGTTGGGGTGGTGGTGGTCT
39
2
78
12
NC_033464.1
132,821
132,838
GAGCTCGAC
9
2
18
13
NC_033464.1
134,231
134,246
TGAACACC
8
2
16
14
NC_033464.1
134,772
135,029
AGCAATCGTAACTCTTAACTTTTAAAAATATTTATTATAAATTAAACATTAAAACTTGCAAGTATAAAGATTATAAAAGTTATCTC
86
3
258
15
NC_033464.1
135,801
135,848
GAAAGGAGGGGG
12
4
48
16
NC_033464.1
140,002
140,193
GAGGGAAGGGGGGAAGTTTCGAGGACCCGCTAAATGAATAAATAGTCG
48
4
192
17
NC_033464.1
146,224
146,289
CCTACCACTACCACCTCTACTACTACCCCTACC
33
2
66
18
NC_033464.1
146,316
146,420
CTCTCCAACCACTCCAGCCAC
21
5
105
19
NC_033464.1
151,266
151,283
ACCACCTCC
9
2
18
20
NC_033464.1
151,449
151,592
CCTTCCCTCCGACTATTTATTCATTTAGCGGGTCCTCGAAACTTCCCC
48
3
144
21
NC_033464.1
155,748
155,795
TCCTTTCCCCCC
12
4
48
22
NC_033464.1
156,573
156,830
TGAGATAACTTTTATAATCTTTATACTTGCAAGTTTTAATGTTTAATTTATAATAAATATTTTTAAAAGTTAAGAGTTACGATTGC
86
3
258
23
NC_033464.1
157,355
157,370
CAGGTGTT
8
2
16
24
NC_033464.1
158,762
158,779
CTCGTCGAG
9
2
18
25
NC_033464.1
162,846
162,923
CACCTTTCCATCCTAGACCACCACCACCCCAACACTCCC
39
2
78
26
NC_033464.1
163,567
163,808
TAATTTAATTAATGTGAGACCC
22
11
242
27
NC_031961.1
2,533
2,548
TATTGGTG
8
2
16
0
NC_032005.1
223
266
TCTGTTGGCTGCAGTCCAGGTT
22
2
44
0
NC_032005.1
4,329
4,346
TTGCTGACT
9
2
18
1
NC_032087.1
3,092
3,107
AGTTGTAT
8
2
16
0
NC_032106.1
2,900
2,917
CGTGAGCAC
9
2
18
0
NC_032112.1
710
729
TTGTTTTGTC
10
2
20
0
NC_032120.1
167
186
GCTCCTCCCA
10
2
20
0
NC_032120.1
1,107
1,124
TGATGTGGC
9
2
18
1
NC_032116.1
7,206
7,237
CCACCTTACTACGGGA
16
2
32
0
NC_032128.1
3,721
3,738
ATCAGAAAA
9
2
18
0
NC_032128.1
6,460
6,477
ACCTTATAA
9
2
18
1
NC_032143.1
4,054
4,069
TTGAAATC
8
2
16
0
NC_032124.1
2,953
2,970
TGACGACGA
9
2
18
0
NC_032137.1
1,513
1,528
TGTATATA
8
2
16
0
NC_032153.1
1,295
1,310
GGCAAAAT
8
2
16
0
NC_032162.1
3,687
3,704
TCCTCTCCA
9
2
18
0
NC_032170.1
1,241
1,258
ACAATTTAG
9
2
18
0
NC_023485.1
2,471
2,488
TGATGAAAA
9
2
18
0
NC_023490.1
1,353
1,368
TGTATATA
8
2
16
0
NC_023492.1
173
190
ATCCAACAA
9
2
18
0
NC_023496.1
1,472
1,487
TATGCACA
8
2
16
0
NC_023496.1
3,239
3,256
TTTACTGGG
9
2
18
1
NC_023496.1
7,010
7,041
TGTCTCATGTATGTGC
16
2
32
2
NC_032726.1
2,206
2,223
GGAGGATCT
9
2
18
0
NC_032209.1
1,287
1,304
AAGAAGAAC
9
2
18
0
NC_032245.1
2,217
2,232
AATCAAAG
8
2
16
0
NC_032245.1
6,356
6,373
AATTGATTG
9
2
18
1
NC_032245.1
13,001
13,016
ACCTTTTT
8
2
16
2
NC_032215.1
9,166
9,181
TTTGCTTG
8
2
16
0
NC_032211.1
8,658
8,679
AATTTAATGCA
11
2
22
0
NC_032211.1
10,928
10,951
TATTTATTGTAG
12
2
24
1
NC_032231.1
3,790
3,807
CTAACCCGC
9
2
18
0
NC_032256.1
1,077
1,094
ATTAGGTTA
9
2
18
0
NC_032257.1
2,132
2,153
TAAATTTCAAT
11
2
22
0
NC_032257.1
4,934
4,967
CTTTAATTTTATTCTAT
17
2
34
1
NC_032282.1
2,161
2,176
AAAAGATT
8
2
16
0
NC_032282.1
7,467
7,490
TTAATAAATAAA
12
2
24
1
NC_032174.1
7,078
7,095
CGTCTGCCA
9
2
18
0
NC_032175.1
9,210
9,225
CCATTCTT
8
2
16
0
NC_032255.1
2,782
2,797
AAAATTTT
8
2
16
0
NC_032255.1
10,608
10,631
TGTGTTAAATAT
12
2
24
1
NC_032255.1
12,830
12,857
CTGACTTACTGCTC
14
2
28
2
NC_032255.1
13,687
13,734
TTTCCTCTTCATCTGAGTCACTCA
24
2
48
3
NC_032255.1
13,965
13,996
GTTCACGAATGTGAGT
16
2
32
4
NC_032255.1
17,105
17,122
ATAAAAGAA
9
2
18
5
NC_032255.1
17,225
17,300
TTAGTTACATAGATTGATA
19
4
76
6
NC_032255.1
18,695
18,710
TAGGTGCA
8
2
16
7
NC_032255.1
23,298
23,313
GAGAAGAA
8
2
16
8
NC_032255.1
23,710
23,733
AAATCTAGTGAA
12
2
24
9
NC_032255.1
27,702
27,797
AAACTATAGAAGAGATTCAAACGA
24
4
96
10
NC_032255.1
27,798
27,845
AAACTATAGAAGAGATTCCAACGA
24
2
48
11
NC_032255.1
27,871
27,900
AGAAGTTCAAACTAT
15
2
30
12
NC_032255.1
29,748
29,783
AATTCGGCATCATTTTCC
18
2
36
13
NC_032255.1
33,270
33,311
GGTTCTGGTTCGGGTTGAGGT
21
2
42
14
NC_032255.1
47,295
47,310
AAAATTTT
8
2
16
15
NC_032255.1
51,786
51,875
TTGATTTCTTTTCGTTCTCTTCGTTTTGACTGGAGTTTTCTTCGT
45
2
90
16
NC_032255.1
60,647
60,670
TTTCGTGAATCG
12
2
24
17
NC_032255.1
72,546
72,569
ATTCGTCACTAG
12
2
24
18
NC_032255.1
76,257
76,300
CTGCAAAATTTTCAATGTTTGC
22
2
44
19
NC_032255.1
77,915
77,950
CACAATAAT
9
4
36
20
NC_032255.1
96,256
96,279
AAAATTTT
8
3
24
21
NC_032255.1
106,527
106,562
GTTCTGGTTCTGGTTCAT
18
2
36
22
NC_032247.1
2,695
2,710
AAGGGAGG
8
2
16
0
NC_032254.1
2,711
2,728
TGAGTACTT
9
2
18
0
NC_032214.1
2,976
2,993
CCCCAACAA
9
2
18
0
NC_032274.1
1,284
1,301
AAAAAAAAG
9
2
18
0
NC_032274.1
1,563
1,580
CACAAACAA
9
2
18
1
NC_032273.1
4,966
4,985
AAGAAGAAGG
10
2
20
0
NC_032444.1
3,665
3,680
GCGTGGTC
8
2
16
0