Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_033620.1
158,903
158,918
AAATACTT
8
2
16
45
NC_033620.1
161,720
161,761
AAGGAGGAGATGGAGAGGGAC
21
2
42
46
NC_033620.1
170,217
170,242
TAAAAATGGCTGC
13
2
26
47
NC_033620.1
171,327
171,366
CAATCAACTTGACGACCTGT
20
2
40
48
NC_033620.1
173,172
173,189
GATGATGAC
9
2
18
49
NC_033776.1
6,661
6,676
GATTGGCA
8
2
16
0
NC_033792.1
1,493
1,508
CATGTGCT
8
2
16
0
NC_033701.1
2,324
2,347
AAATAGAAACGA
12
2
24
0
NC_033712.1
113
134
TTATTATATTA
11
2
22
0
NC_033717.1
11,036
11,053
AAGACCCTC
9
2
18
0
NC_033722.1
9,570
9,675
TCGTCTGATATGCGTAAACTATCAAGTTGGTTACTGTTCCAATGGAAAGACAG
53
2
106
0
NC_033761.1
5,750
5,769
GAAGAAAAAG
10
2
20
0
NC_033756.1
2,090
2,105
AGAGATTG
8
2
16
0
NC_033725.1
9,630
9,647
CCACCATTT
9
2
18
0
NC_033772.1
1,905
1,922
ACAAAAAAG
9
2
18
0
NC_033772.1
2,313
2,328
CACGCAAA
8
2
16
1
NC_033774.1
1,895
1,910
CCAAGATG
8
2
16
0
NC_033745.1
7,322
7,339
CATTGTATA
9
2
18
0
NC_033741.1
309
350
ACACTCGGAACCCTTTTAGTC
21
2
42
0
NC_033746.1
252
285
CTTCAATCACACTTCAA
17
2
34
0
NC_033746.1
307
338
GTGGAACATGTTCTTC
16
2
32
1
NC_033746.1
340
371
TGGAACGTGTTCTTCA
16
2
32
2
NC_033736.1
45
60
GACCCCCC
8
2
16
0
NC_033736.1
601
622
TCTCCTCCTCC
11
2
22
1
NC_033700.1
22,126
22,141
ATGGTAGT
8
2
16
0
NC_033705.1
13
28
AAAAAAAT
8
2
16
0
NC_033705.1
1,407
1,436
CTATTCTATCCTATC
15
2
30
1
NC_033705.1
9,980
9,995
CGATACTA
8
2
16
2
NC_033705.1
11,683
11,698
ATTTTTTT
8
2
16
3
NC_033728.1
2,742
2,759
TTTCTAAAT
9
2
18
0
NC_018105.1
215
230
GAGTTGCA
8
2
16
0
NC_033820.1
6,094
6,109
TGTGGTGG
8
2
16
0
NC_033830.1
6,286
6,303
ATCTAAAGA
9
2
18
0
NC_033832.1
2,142
2,159
TTTTTTGTA
9
2
18
0
NC_033833.1
4,355
4,370
CCCATCAG
8
2
16
0
NC_018174.1
7,811
7,826
AAATTTTT
8
2
16
0
NC_018175.1
4,002
4,019
ATGAAGAGG
9
2
18
0
NC_018226.1
6,861
6,878
TTTAATTTG
9
2
18
0
NC_034216.1
1,749
1,764
TTATCAAA
8
2
16
0
NC_034218.1
416
481
GCTGTTTGGCAGGAAGCCCAGTTCTGGCTGACT
33
2
66
0
NC_034221.1
135
152
GGTTTGCAT
9
2
18
0
NC_018399.1
1,243
1,260
GAAGAGGAG
9
2
18
0
NC_018399.1
3,040
3,057
AAATCAAGA
9
2
18
1
NC_018384.1
251
270
TCTTTCTTTT
10
2
20
0
NC_018383.1
247
266
TCTTTCCTTT
10
2
20
0
NC_034266.1
387
434
GGGTTAGGGTTAGGGTTAGGGTTG
24
2
48
0
NC_034266.1
1,223
1,284
CCCCGTTCACCCTAACCCTCGCTCCCCCCCT
31
2
62
1
NC_034266.1
1,285
1,408
CCCTGTTCACCCTAACCCTCGCTCCCCCCCT
31
4
124
2
NC_034266.1
1,563
1,578
ATCCACCC
8
2
16
3
NC_034266.1
1,592
1,607
ACCCACAG
8
2
16
4
NC_034266.1
5,369
5,384
GGGCTCGC
8
2
16
5
NC_034266.1
6,055
6,072
TCCTCAGCC
9
2
18
6
NC_034266.1
6,440
6,491
CGCAGCCCCAGCCCCAGCACGCAATC
26
2
52
7
NC_034266.1
6,582
6,638
AGACCCCATTTCCTCCCCA
19
3
57
8
NC_034266.1
16,378
16,419
CGGGCTGCCGAGCCAAGCGGT
21
2
42
9
NC_034266.1
16,802
16,855
ACAACGCCG
9
6
54
10
NC_034266.1
28,037
28,054
CGGTGTGTG
9
2
18
11
NC_034266.1
34,270
34,287
ATAGTACGC
9
2
18
12
NC_034266.1
40,848
40,865
GCGGGTCGA
9
2
18
13
NC_034266.1
44,891
44,910
GAGCGAGAAC
10
2
20
14
NC_034266.1
52,442
52,457
AACGCCTC
8
2
16
15
NC_034266.1
69,148
69,165
CCAGCGCCG
9
2
18
16
NC_034266.1
88,036
88,053
GGCCGCGTC
9
2
18
17
NC_034266.1
119,507
119,526
TCATTCGCTA
10
2
20
18
NC_034266.1
143,896
143,952
GGAAATGGGGTCTTGGGGA
19
3
57
19
NC_034266.1
144,048
144,099
GGGCTGCGGATTGCGTGCTGGGGCTG
26
2
52
20
NC_034266.1
144,475
144,492
GGCTGAGGA
9
2
18
21
NC_034266.1
145,163
145,178
GCGAGCCC
8
2
16
22
NC_034266.1
148,940
148,955
CTGTGGGT
8
2
16
23
NC_034266.1
148,969
148,984
GGGTGGAT
8
2
16
24
NC_034266.1
149,121
149,275
GGGTTAGGGTGAACAGGGAGGGGGGGAGCGA
31
5
155
25
NC_034266.1
150,112
150,159
CCAACCCTAACCCTAACCCTAACC
24
2
48
26
NC_034266.1
153,087
153,104
CCACGACGA
9
2
18
27
NC_034266.1
153,257
153,286
TCCCCGCTGTCAACA
15
2
30
28
NC_034266.1
153,351
153,366
TCGGTGGG
8
2
16
29
NC_034266.1
156,474
156,495
GGGCCTGCGCC
11
2
22
30
NC_034266.1
157,928
157,945
TGGTGGCGG
9
2
18
31
NC_034266.1
161,398
161,413
ACTAAGGG
8
2
16
32
NC_034266.1
166,509
166,526
CTCAGCCGA
9
2
18
33
NC_034266.1
167,233
167,252
TTCGCCATAG
10
2
20
34
NC_034266.1
167,860
167,927
CCCCCTGTACCGGCTACCCCGATCCAGCCACCCA
34
2
68
35
NC_034266.1
170,515
170,541
CGCCGCGGC
9
3
27
36
NC_034266.1
170,630
170,647
ACCACCGCC
9
2
18
37
NC_034266.1
172,176
172,193
AAAGGGGGA
9
2
18
38
NC_034266.1
182,589
182,606
TTTCCCCCT
9
2
18
39
NC_034266.1
184,137
184,154
GGCGGTGGT
9
2
18
40
NC_034266.1
184,243
184,269
GCCGCGGCG
9
3
27
41
NC_034266.1
186,852
186,919
GGGGGTGGGTGGCTGGATCGGGGTAGCCGGTACA
34
2
68
42
NC_034266.1
187,530
187,549
AACTATGGCG
10
2
20
43
NC_034266.1
188,253
188,270
CTGAGTCGG
9
2
18
44
NC_034266.1
193,371
193,386
CCCTTAGT
8
2
16
45
NC_034266.1
196,839
196,856
CCGCCACCA
9
2
18
46
NC_034266.1
198,289
198,310
GGCGCAGGCCC
11
2
22
47
NC_034266.1
201,418
201,433
CCCACCGA
8
2
16
48
NC_034266.1
201,494
201,523
GGGATGTTGACAGCG
15
2
30
49
NC_034266.1
201,679
201,696
GTCGTCGTG
9
2
18
50
NC_034253.1
2,298
2,315
TGTGGGTGA
9
2
18
0
NC_034246.1
5,574
5,651
AAACCGCCCTGTATAAAGATACGGTTAAAACAGGTATGG
39
2
78
0
NC_034250.1
760
779
AAGAAAAAAA
10
2
20
0
NC_034252.1
563
584
AAACACAAACC
11
2
22
0