Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_028099.1
114,679
114,708
CACTTTCATCACCAT
15
2
30
16
NC_028099.1
114,762
114,893
ACAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGC
66
2
132
17
NC_028097.1
3,177
3,192
CCCCCAAA
8
2
16
0
NC_028124.1
1,195
1,210
TATTTAAG
8
2
16
0
NC_028119.1
2,158
2,177
GTTGTTTATT
10
2
20
0
NC_028119.1
4,589
4,608
CAGAAGCCTC
10
2
20
1
NC_028116.1
1,140
1,157
TAAAAAAAA
9
2
18
0
NC_030688.1
2,493
2,508
CTGATAAG
8
2
16
0
NC_028368.1
22,259
22,274
TGTAAATA
8
2
16
0
NC_028374.1
22,627
22,646
AAGAAAATAG
10
2
20
0
NC_028363.1
5,001
5,016
ATTTATGG
8
2
16
0
NC_028367.1
182
201
ATATATATAA
10
2
20
0
NC_028367.1
16,435
16,450
TTAGTACA
8
2
16
1
NC_028373.1
12,890
12,905
TTGGCTTA
8
2
16
0
NC_028373.1
18,038
18,055
TTGTAAATA
9
2
18
1
NC_028383.1
90
105
AAACAATT
8
2
16
0
NC_028388.1
563
580
GGACATGAA
9
2
18
0
NC_028400.1
1,522
1,537
GGGAAAAA
8
2
16
0
NC_028142.1
2,592
2,607
ATTGGAGT
8
2
16
0
NC_028143.1
2,541
2,556
ATTGGAGT
8
2
16
0
NC_028141.1
2,511
2,528
ATTGGTGAC
9
2
18
0
NC_028140.1
2,546
2,563
ATTGGTGAC
9
2
18
0
NC_028138.1
2,552
2,567
TGGTGTCC
8
2
16
0
NC_004732.1
2,576
2,591
TGGTGTCC
8
2
16
0
NC_004732.1
2,605
2,626
AGGCTTCTAGG
11
2
22
1
NC_028139.1
857
872
TTGTCAGG
8
2
16
0
NC_028240.1
213
228
AAGAAGAG
8
2
16
0
NC_028240.1
2,979
2,994
GAGATGAT
8
2
16
1
NC_028239.1
4,688
4,703
TTAAATGG
8
2
16
0
NC_028241.1
14,446
14,461
CTTTTGTT
8
2
16
0
NC_028244.1
3,864
3,879
CCTTATAT
8
2
16
0
NC_028231.1
6,695
6,710
ACAACGAG
8
2
16
0
NC_028259.1
2,026
2,041
TGGAGGGG
8
2
16
0
NC_028259.1
10,360
10,377
CCGCGTCAA
9
2
18
1
NC_028267.1
3,234
3,251
CTCCTGTTA
9
2
18
0
NC_028267.1
3,720
3,761
GAGGAGGAGGACGAGGAGGAC
21
2
42
1
NC_028267.1
3,777
3,794
CCACCACCT
9
2
18
2
NC_028267.1
7,677
7,698
ACCAGGTGGGT
11
2
22
3
NC_028470.1
5,752
5,773
TTTTGATCGCT
11
2
22
0
NC_028491.1
847
870
TTTTATCCTCAA
12
2
24
0
NC_028491.1
1,980
2,099
TCCTCGTTTTCATCTTGAACCCGAATATATTCTCATATAAATTATTTTTTCTCTCAAAAG
60
2
120
1
NC_028491.1
12,223
12,238
ACTTTTTT
8
2
16
2
NC_028491.1
19,177
19,194
GCCGCCACC
9
2
18
3
NC_028491.1
19,681
19,722
GAGGAAAAATATGAAGAATTA
21
2
42
4
NC_028491.1
23,124
23,195
GGATTAGGTTCAGGATTAGGCGGTGGATTAGGTGGT
36
2
72
5
NC_028491.1
23,207
23,230
AGGATTAGGCGG
12
2
24
6
NC_028491.1
23,231
23,254
AGGATTAGGTGG
12
2
24
7
NC_028491.1
23,265
23,288
GGTGGATTAGGT
12
2
24
8
NC_028491.1
29,878
29,925
TCTAGATGTGAACGAGTATATTTA
24
2
48
9
NC_028491.1
32,007
32,024
GTACTACTA
9
2
18
10
NC_028491.1
42,481
42,660
TCGTATTCAAGATGAAAACGAGGGTTTTCATCAAATAAAATATTTTATCTGAGAATAGAT
60
3
180
11
NC_028491.1
52,192
52,211
CTGACAACAA
10
2
20
12
NC_028491.1
52,437
52,452
TTGAAAAA
8
2
16
13
NC_028491.1
65,079
65,120
TGTTAAAAAATCGAACTTTGC
21
2
42
14
NC_028491.1
65,204
65,245
TGTTAAAAAATCGAACTTTGC
21
2
42
15
NC_028491.1
70,858
70,875
TCATCCTCC
9
2
18
16
NC_028491.1
72,728
72,769
AAACAAGAAACAAACAGATGA
21
2
42
17
NC_028491.1
74,051
74,227
ATTCAGAGAAAAATATTTTATTTCATTAAAATAACTCGTTTACATCTAGAGCCGAATTG
59
3
177
18
NC_028491.1
86,981
86,996
CTTCATCA
8
2
16
19
NC_028491.1
87,913
87,928
AACTCACC
8
2
16
20
NC_028491.1
94,462
94,581
GAATATATTCGGGTTCAAGATGAAAACGAAGTTTTTCTTCAAATAAAATATTTTATCTGA
60
2
120
21
NC_028491.1
94,582
94,701
GAATATATTCGGGTTCAAGATGAAAACGAAGTTTTTCTTCAAATAAAATATTTTATTTGA
60
2
120
22
NC_028491.1
95,359
95,376
TTTGTACAT
9
2
18
23
NC_028472.1
1,255
1,272
TGGTCAATT
9
2
18
0
NC_028473.1
489
504
GTAGTTAT
8
2
16
0
NC_028636.1
3,730
3,747
TTCTTCGTA
9
2
18
0
NC_028636.1
5,105
5,146
GCCGCTGCTGGTGTTGACGGT
21
2
42
1
NC_028636.1
11,114
11,167
ATTTCATCATCCAACTTTAGCATGACA
27
2
54
2
NC_028636.1
13,617
13,642
CTCATCGCATGAT
13
2
26
3
NC_028636.1
13,858
13,883
GCATGATCTCATC
13
2
26
4
NC_028636.1
13,988
14,013
GCATGATCTCATC
13
2
26
5
NC_028636.1
14,248
14,273
GCATGATCTCATC
13
2
26
6
NC_028636.1
16,694
16,719
ATCATGCGATGAG
13
2
26
7
NC_028636.1
16,863
16,888
ATCATGCGATGAG
13
2
26
8
NC_028636.1
17,032
17,057
ATCATGCGATGAG
13
2
26
9
NC_028636.1
17,082
17,107
ATGCGATGAGCTA
13
2
26
10
NC_028636.1
24,001
24,030
CTAATGATATCATCG
15
2
30
11
NC_028636.1
24,940
24,957
GCAAAGACA
9
2
18
12
NC_028636.1
25,489
25,506
TATTGTATG
9
2
18
13
NC_028636.1
32,137
32,152
AAATTTTT
8
2
16
14
NC_028636.1
37,380
37,405
TCATAGCATGATG
13
2
26
15
NC_028636.1
69,924
69,939
GATGTTGT
8
2
16
16
NC_028636.1
74,779
74,816
AACAATGGTATTTTTAGTT
19
2
38
17
NC_028636.1
74,883
74,924
CCGCTGCCTTCCGATGAGTAA
21
2
42
18
NC_028636.1
95,843
95,868
CATGATCTCATCG
13
2
26
19
NC_028636.1
95,937
95,956
GATGATGAAA
10
2
20
20
NC_028636.1
96,394
96,419
GCATGATCTCATC
13
2
26
21
NC_028636.1
109,203
109,228
ATCATGCGATGAG
13
2
26
22
NC_028636.1
109,350
109,375
GATGAGATCATGC
13
2
26
23
NC_028636.1
114,265
114,290
ATCATGCGATGAG
13
2
26
24
NC_028636.1
114,662
114,713
CGATGAGCTAATGCGATGAGATCATG
26
2
52
25
NC_028636.1
114,798
114,815
TTTTTTAAA
9
2
18
26
NC_028635.1
316
335
CTGGGGCCAG
10
2
20
0
NC_028635.1
4,014
4,031
TTCTTCTGG
9
2
18
1
NC_028462.1
8,546
8,561
TCGGTTTG
8
2
16
0
NC_037576.1
207
222
TTTTGAAC
8
2
16
0
NC_023339.1
342
357
GTTGTTGA
8
2
16
0
NC_029123.1
3,392
3,407
TACTACTG
8
2
16
0
NC_029124.1
3,401
3,416
CGGAAAAA
8
2
16
0
NC_028891.1
14,959
14,976
CCTTTTTTA
9
2
18
0