Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_030200.1
74,545
74,562
TATGCCAAT
9
2
18
5
NC_030200.1
111,840
111,855
AAAAATTT
8
2
16
6
NC_030200.1
118,721
118,738
TATTAAAAA
9
2
18
7
NC_030200.1
119,306
119,341
ACTAAACAT
9
4
36
8
NC_030200.1
119,383
119,400
CATACTAAA
9
2
18
9
NC_030200.1
119,404
119,529
ACTAAACAT
9
14
126
10
NC_030200.1
119,530
119,583
GCTAAACAT
9
6
54
11
NC_030200.1
119,584
119,601
GCTAGGCAT
9
2
18
12
NC_030200.1
119,811
119,828
TATGTTTTT
9
2
18
13
NC_030200.1
120,079
120,094
TTATAAAA
8
2
16
14
NC_030200.1
121,583
121,606
ACTGTCTGAGTC
12
2
24
15
NC_030205.1
3,643
3,684
AAGGATGCTCTTATGAGCCAA
21
2
42
0
NC_030205.1
5,363
5,380
TAGTGGGTT
9
2
18
1
NC_030205.1
5,394
5,427
TTGCTTTTTATCTCTTA
17
2
34
2
NC_030297.1
2,214
2,231
ACAGCTCAA
9
2
18
0
NC_030297.1
2,539
2,592
AAGGGGGCTCCGCCCCCTTAAACCCCC
27
2
54
1
NC_030293.1
6,899
6,914
TACTCAAA
8
2
16
0
NC_030293.1
8,590
8,605
GCGACAAT
8
2
16
1
NC_018093.1
1,544
1,561
AACAACAGC
9
2
18
0
NC_030238.1
933
948
CCCAAGTT
8
2
16
0
NC_030238.1
2,506
2,521
AGGTGAGC
8
2
16
1
NC_030233.1
3,104
3,121
GGATATCTT
9
2
18
0
NC_030240.1
10,057
10,072
TATAAAAA
8
2
16
0
NC_030240.1
13,185
13,200
TAATAAAA
8
2
16
1
NC_030240.1
18,358
18,375
GCGGCAACG
9
2
18
2
NC_030240.1
40,711
40,732
AAATATTGTAA
11
2
22
3
NC_030240.1
42,597
42,612
AATTTTTT
8
2
16
4
NC_030240.1
45,487
45,510
CGTCGTCATTGT
12
2
24
5
NC_030240.1
53,009
53,030
TAATATAAATG
11
2
22
6
NC_030240.1
71,051
71,082
AATATATT
8
4
32
7
NC_030240.1
72,622
72,639
TACAATGTG
9
2
18
8
NC_030240.1
77,711
77,728
TTTGTACGA
9
2
18
9
NC_030240.1
79,786
79,803
GATTTATTT
9
2
18
10
NC_030240.1
84,005
84,022
TAATAATAG
9
2
18
11
NC_030240.1
85,850
85,865
ATTAATTT
8
2
16
12
NC_030240.1
86,121
86,136
AAACATTT
8
2
16
13
NC_030240.1
93,906
93,923
CAATATATT
9
2
18
14
NC_030240.1
98,554
98,579
GCACGTTGATGTG
13
2
26
15
NC_030240.1
103,805
103,820
CCTTTTAA
8
2
16
16
NC_030240.1
106,451
106,468
CGCCGCCAA
9
2
18
17
NC_030240.1
108,108
108,123
AATTTATT
8
2
16
18
NC_030240.1
116,751
116,766
ATGAACGC
8
2
16
19
NC_030240.1
126,374
126,397
TCGTTGCTGTCG
12
2
24
20
NC_030240.1
126,429
126,446
CGCCGCACA
9
2
18
21
NC_030240.1
127,244
127,267
ATAATAATAGTA
12
2
24
22
NC_030228.1
99
124
ATTTTATTTATTC
13
2
26
0
NC_030228.1
2,816
2,833
AAATTTCCA
9
2
18
1
NC_030228.1
8,319
8,334
CAAAAAAA
8
2
16
2
NC_030228.1
15,843
15,858
TTCAATTA
8
2
16
3
NC_030227.1
16,248
16,265
GAAGAAAAA
9
2
18
0
NC_030227.1
19,219
19,236
GTGGTTTTG
9
2
18
1
NC_027059.1
2,245
2,262
GAGGAAACC
9
2
18
0
NC_023301.1
970
989
GTCAGCTGAC
10
2
20
0
NC_023307.1
399
416
ATTCATATC
9
2
18
0
NC_023298.1
756
771
TCTCACGC
8
2
16
0
NC_027016.1
11,312
11,327
AGCTGTAT
8
2
16
0
NC_027016.1
25,154
25,171
TGGTGGCGG
9
2
18
1
NC_027016.1
40,744
40,761
CGCTGCCAT
9
2
18
2
NC_027016.1
47,549
47,564
TTTTGTGG
8
2
16
3
NC_027016.1
97,431
97,446
GCAAAAAC
8
2
16
4
NC_027016.1
101,523
101,540
CGCCGCTGC
9
2
18
5
NC_027016.1
152,295
152,312
TCGTGCAGC
9
2
18
6
NC_027016.1
161,023
161,038
AGCTTCTT
8
2
16
7
NC_027016.1
203,677
203,694
GTGGTGGAT
9
2
18
8
NC_027040.1
451
468
CAGAATGTA
9
2
18
0
NC_023312.1
471
488
ATGTACAGA
9
2
18
0
NC_026944.1
179
196
AAGATAACA
9
2
18
0
NC_026944.1
219
245
GTACACCAC
9
3
27
1
NC_026944.1
3,563
3,578
GACCTTTT
8
2
16
2
NC_027199.1
4,544
4,561
AATATAGAG
9
2
18
0
NC_027199.1
6,725
6,742
ATAAGTTTT
9
2
18
1
NC_027199.1
8,301
8,316
ATATTATT
8
2
16
2
NC_027208.1
5,820
5,835
CTTCCTGG
8
2
16
0
NC_027124.1
3,501
3,518
AAAGTTGAG
9
2
18
0
NC_027139.1
3,427
3,444
AGCCTTGCA
9
2
18
0
NC_027129.1
458
475
CAGGATGTA
9
2
18
0
NC_027212.1
1,408
1,425
GTGTAAATA
9
2
18
0
NC_027566.1
2,612
2,627
TTAAATAA
8
2
16
0
NC_027532.1
4,012
4,029
TTCTTCTGG
9
2
18
0
NC_027528.1
853
870
ATTGATGAA
9
2
18
0
NC_027533.1
3,209
3,224
GCGCGAAA
8
2
16
0
NC_027619.1
5,261
5,276
CCTCCCCG
8
2
16
0
NC_027635.1
3,051
3,068
TGCTAAAGA
9
2
18
0
NC_027634.1
2,325
2,354
TGTAAACCGATGGTG
15
2
30
0
NC_027633.1
4,368
4,391
ATTGAACCTAAA
12
2
24
0
NC_027647.1
561
576
CTTCACTG
8
2
16
0
NC_027646.1
2,767
2,784
TGCTGCTCG
9
2
18
0
NC_027645.1
2,221
2,238
CGTCGAATA
9
2
18
0
NC_027645.1
2,732
2,749
TTTTTTCAT
9
2
18
1
NC_027644.1
3,267
3,282
AAACTCGT
8
2
16
0
NC_027643.1
1,744
1,761
ATAATTTTT
9
2
18
0
NC_027641.1
3,439
3,458
TTTTAATTAA
10
2
20
0
NC_027701.1
427
444
AATTCTTTT
9
2
18
0
NC_027714.1
1,813
1,830
TAATATTAT
9
2
18
0
NC_027714.1
2,615
2,630
CGGAGGAA
8
2
16
1
NC_027713.1
7,352
7,367
TTGGATGG
8
2
16
0
NC_027706.1
50
65
TTCAAGCA
8
2
16
0
NC_027720.1
1,206
1,235
TTTTATTTAT
10
3
30
0
NC_027719.1
1,926
1,947
AACACACTTTA
11
2
22
0
NC_027791.1
1,555
1,570
ATGAGATT
8
2
16
0