Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_018448.1
416
431
ATCTCTTG
8
2
16
0
NC_018448.1
8,002
8,019
TTTGATTTC
9
2
18
1
NC_018450.1
3,042
3,059
AGAAAATCA
9
2
18
0
NC_018457.1
2,535
2,550
AATTGGTG
8
2
16
0
NC_018481.1
1,078
1,093
TGAAGAAA
8
2
16
0
NC_018482.1
5,875
5,890
TGAATCTC
8
2
16
0
NC_018483.1
1,288
1,303
TGAAGAAA
8
2
16
0
NC_018465.1
6,923
6,938
AATTATTT
8
2
16
0
NC_023433.1
2,050
2,067
GACCGTTAT
9
2
18
0
NC_023429.1
2,105
2,162
GCATCCTTCCTTACGCCGGAGGCTTAGGA
29
2
58
0
NC_030310.1
472
489
ATGTACAGA
9
2
18
0
NC_030309.1
1,079
1,102
CCCCAATA
8
3
24
0
NC_030379.1
1,074
1,105
AAAAAGAAAAGAAAAG
16
2
32
0
NC_030379.1
1,237
1,258
TTGTTTTTATT
11
2
22
1
NC_030380.1
1,886
1,903
ATTTTTTTG
9
2
18
0
NC_030380.1
1,974
1,989
CACACTTA
8
2
16
1
NC_023441.1
437
452
ATTTTTTT
8
2
16
0
NC_023441.1
1,955
1,972
GCTCTGTGA
9
2
18
1
NC_023441.1
3,541
3,558
CGTTCACTT
9
2
18
2
NC_023442.1
3,778
3,813
GATTGGGCGTTGTCCGCT
18
2
36
0
NC_023442.1
13,079
13,124
ATTCATACCGGCTTTTAGTTTCG
23
2
46
1
NC_023442.1
13,267
13,286
ATGTATAATA
10
2
20
2
NC_023442.1
42,381
42,398
AACAAATTA
9
2
18
3
NC_023442.1
44,492
44,509
GCTAATAAA
9
2
18
4
NC_023442.1
56,329
56,356
TTAATTGTTAATTA
14
2
28
5
NC_023442.1
66,389
66,456
ACAAAATGATGTCATTT
17
4
68
6
NC_023442.1
82,169
82,210
TAGTGTTTTAAAGA
14
3
42
7
NC_023442.1
87,040
87,057
ATCGTTTGT
9
2
18
8
NC_023442.1
88,514
88,531
TCTGAATAG
9
2
18
9
NC_023442.1
92,179
92,196
GTCGTGATG
9
2
18
10
NC_023442.1
100,386
100,411
CAAATATAACAAT
13
2
26
11
NC_023442.1
107,710
107,725
TTCATATG
8
2
16
12
NC_023442.1
109,405
109,424
AATAATATAC
10
2
20
13
NC_023442.1
118,043
118,058
TTTTTGAA
8
2
16
14
NC_023440.1
1,505
1,520
AAAAACTT
8
2
16
0
NC_023440.1
8,969
8,984
CTTTATTT
8
2
16
1
NC_030415.1
2,196
2,213
CAGGGCCGT
9
2
18
0
NC_030462.1
6,781
6,796
AACCATCC
8
2
16
0
NC_030663.1
1,261
1,280
AATTTATGTA
10
2
20
0
NC_030663.1
1,324
1,341
AAAAAAAGT
9
2
18
1
NC_030654.1
4,682
4,697
CCGCCACT
8
2
16
0
NC_030750.1
1,674
1,693
ACAAAATAAA
10
2
20
0
NC_030798.1
1,134
1,151
GACTCTGTT
9
2
18
0
NC_030796.1
3,704
3,721
CCACGCAGA
9
2
18
0
NC_030838.1
277
322
TGCTTATCACTCCACTCCCTTGA
23
2
46
0
NC_030838.1
4,406
4,423
AAAAACACA
9
2
18
1
NC_030838.1
4,436
4,453
TGACCTTTT
9
2
18
2
NC_030838.1
4,822
4,839
ACCCCAAAA
9
2
18
3
NC_030843.1
3,767
3,784
TGGAAGCTT
9
2
18
0
NC_030871.1
2,588
2,607
TATTTCTCAC
10
2
20
0
NC_030868.1
2,013
2,028
CAAGCATT
8
2
16
0
NC_030868.1
6,082
6,097
GATTGAAA
8
2
16
1
NC_030879.1
2,359
2,382
AAAACAAAAAAA
12
2
24
0
NC_030879.1
2,389
2,406
AAAAAACCA
9
2
18
1
NC_030887.1
144
159
CGGAGTTA
8
2
16
0
NC_031088.1
12,870
12,885
GGTATTGA
8
2
16
0
NC_031141.1
9,313
9,330
ATCAGTTCT
9
2
18
0
NC_031217.1
2,399
2,590
GGTGCAATGGATCCTTATATGTACACACAGAAAAAGGCCCAGGTTGGTTAAAAAATGAATGGGGCATTGTAATAAGTGGGGATTTACTGACAGGCG
96
2
192
0
NC_031218.1
2,104
2,119
CTAGGGTA
8
2
16
0
NC_031220.1
3,882
3,899
CAAAGAAAA
9
2
18
0
NC_031215.1
2,651
2,668
ACAACCACC
9
2
18
0
NC_031225.1
12,179
12,196
GGTGAACAA
9
2
18
0
NC_031282.1
12,550
12,565
AAAAACAC
8
2
16
0
NC_031278.1
2,879
2,894
AAAAGAAG
8
2
16
0
NC_031278.1
7,937
7,954
AACCAACAT
9
2
18
1
NC_031295.1
2,454
2,471
GTATTTAAG
9
2
18
0
NC_031298.1
1,703
1,718
TCTTTGAG
8
2
16
0
NC_031298.1
3,788
3,805
AAGAGATCA
9
2
18
1
NC_031273.1
3,639
3,656
TGGCTGCAG
9
2
18
0
NC_031227.1
2,833
2,848
TGATGATA
8
2
16
0
NC_031301.1
5,271
5,288
TTAAAACAG
9
2
18
0
NC_031316.1
1,645
1,660
AATCAGAG
8
2
16
0
NC_031314.1
504
521
TGTTGGATT
9
2
18
0
NC_031306.1
456
473
GATGTACAG
9
2
18
0
NC_031336.1
5,056
5,071
GAGCAACA
8
2
16
0
NC_031451.1
2,535
2,550
TGGTGTCC
8
2
16
0
NC_031687.1
4,103
4,122
CCATTTTGCA
10
2
20
0
NC_031691.1
3,492
3,507
ACTTCTTT
8
2
16
0
NC_031747.1
4,555
4,572
CCACCTCCT
9
2
18
0
NC_031758.1
4,091
4,106
TTTTGCAA
8
2
16
0
NC_031759.1
2,222
2,241
TTTTTTTGTA
10
2
20
0
NC_031751.1
4,262
4,285
ATGTTACT
8
3
24
0
NC_031760.1
449
466
CAGGATGTA
9
2
18
0
NC_031761.1
1,549
1,572
GGCGGCATGTTT
12
2
24
0
NC_031761.1
1,573
1,632
GGTGGTGGAGGCGGAGAGGGCGGCATGTTT
30
2
60
1
NC_031761.1
2,088
2,141
AGGTGCTGCAAACGATTGAGCGGATGG
27
2
54
2
NC_031761.1
6,063
6,160
CTGTGACTAGCTGG
14
7
98
3
NC_031761.1
6,164
6,191
GACTAGCTGGCTGT
14
2
28
4
NC_031761.1
6,247
6,282
CTGGCTGGCTGGCTGTAA
18
2
36
5
NC_031761.1
6,283
6,394
CTGGCTGGCTGTGA
14
8
112
6
NC_031761.1
24,282
24,297
CAATTTGT
8
2
16
7
NC_031761.1
37,438
37,453
AATTTTAT
8
2
16
8
NC_031761.1
59,017
59,232
CGACGCCTCCGCCAACACCTTCAC
24
9
216
9
NC_031761.1
59,233
59,280
CGACGCCTCCGCCAACGCCTTTAC
24
2
48
10
NC_031761.1
59,286
59,333
CCTTCACCGACGCCTCCGCCAACA
24
2
48
11
NC_031761.1
59,346
59,465
CCTTTACCGACGCCTTCGCCAACACCTTCA
30
4
120
12
NC_031761.1
77,048
77,095
CGGTTGTTGGAGTGGTGGCTGAGG
24
2
48
13
NC_031761.1
77,103
77,174
TGAGGCGGCGGTTGAAATGGTGGC
24
3
72
14
NC_031761.1
77,289
77,318
ATGTCGCGGCCTGTC
15
2
30
15
NC_031761.1
106,809
106,826
GTAAAGCGA
9
2
18
16