Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_032437.1
11,258
11,273
CATATATT
8
2
16
0
NC_032484.1
3,754
3,771
AACAAACCC
9
2
18
0
NC_032484.1
4,140
4,155
GGCCACAC
8
2
16
1
NC_032481.1
7,083
7,100
TGATGCTGC
9
2
18
0
NC_032447.1
11,430
11,445
TTAATAAA
8
2
16
0
NC_032445.1
10,613
10,628
ATGTAACC
8
2
16
0
NC_032490.1
1,882
1,899
AAAAGCTAC
9
2
18
0
NC_032456.1
6,979
6,996
TTCTGATAT
9
2
18
0
NC_032465.1
286
303
AAAAAAAAG
9
2
18
0
NC_032427.1
693
710
AGATTGAGG
9
2
18
0
NC_032430.1
10,815
10,830
AGCTGTTG
8
2
16
0
NC_032453.1
1,530
1,545
GACAGTAA
8
2
16
0
NC_032501.1
150
167
TCGTGGACG
9
2
18
0
NC_032495.1
4,508
4,523
TCAAGCAA
8
2
16
0
NC_032478.1
1
118
ATGCGCTGGGAAGCGCTTTATAAATATCCAAATGTTTGCCAGAGTTCTAATAACTGGCT
59
2
118
0
NC_032478.1
5,955
5,972
TATTTAGAT
9
2
18
1
NC_032482.1
193
208
GCTCTGTA
8
2
16
0
NC_032515.1
4,468
4,485
TTTAGTGGC
9
2
18
0
NC_032515.1
5,181
5,232
AATGATTTCACACCAATTAATAAAAA
26
2
52
1
NC_032504.1
1,032
1,047
CTTATTTT
8
2
16
0
NC_032510.1
2,060
2,077
TGGACAAAA
9
2
18
0
NC_032429.1
3,284
3,301
CTTGGATAG
9
2
18
0
NC_032422.1
6,736
6,751
CATCTTAT
8
2
16
0
NC_032471.1
1,249
1,264
CCAAGGCT
8
2
16
0
NC_032527.1
8,827
8,842
CTTTTCGT
8
2
16
0
NC_032622.1
115
130
TTTCAATA
8
2
16
0
NC_032622.1
12,502
12,561
TTATATTTAGCGTGTGAAAAATATTTAATC
30
2
60
1
NC_032622.1
12,677
12,698
ATTATGTATTT
11
2
22
2
NC_032543.1
97
112
TTTTTTGG
8
2
16
0
NC_032543.1
2,512
2,527
ACCAAGAG
8
2
16
1
NC_032543.1
10,198
10,215
GGGCTATTT
9
2
18
2
NC_032543.1
10,690
10,705
TTTTTTGG
8
2
16
3
NC_032570.1
236
257
TCAGTTTTGCA
11
2
22
0
NC_032595.1
192
215
TCGCATTCGCAC
12
2
24
0
NC_032597.1
5,840
5,857
AATTTTTAT
9
2
18
0
NC_032642.1
2,972
2,993
CCTGTTCAGAA
11
2
22
0
NC_032584.1
1,354
1,371
CGAAATTGG
9
2
18
0
NC_032529.1
1
162
TTCATACGCTTGCCAGCGAATAGGCACTTGATACGCTTGCCAGCGAAAAGGCAA
54
3
162
0
NC_032614.1
8,586
8,601
AGTTAATT
8
2
16
0
NC_032608.1
3,923
3,938
CTCTCCAA
8
2
16
0
NC_032626.1
5,813
5,830
GAAGTACCT
9
2
18
0
NC_032626.1
9,914
9,929
TGTACATA
8
2
16
1
NC_032621.1
8,751
8,766
GATGGTGT
8
2
16
0
NC_032634.1
7,115
7,138
ATAGGAAATAAA
12
2
24
0
NC_032632.1
7,025
7,042
TTGTGCTTA
9
2
18
0
NC_032537.1
9,622
9,649
TTACATATTTACAT
14
2
28
0
NC_032612.1
5,606
5,623
GTAAGGACC
9
2
18
0
NC_032602.1
137
152
TTCTTTTA
8
2
16
0
NC_032574.1
3,836
3,857
ATCAGACTATG
11
2
22
0
NC_032633.1
8,582
8,599
CACTAAGGA
9
2
18
0
NC_032571.1
10,436
10,455
ACCATATATA
10
2
20
0
NC_032568.1
4,072
4,087
CAGATGAT
8
2
16
0
NC_032568.1
6,159
6,178
GTGACATGGA
10
2
20
1
NC_032583.1
5,343
5,362
CACTGTCGCG
10
2
20
0
NC_032542.1
514
537
CAATTGCTCTCT
12
2
24
0
NC_032542.1
7,201
7,218
TCCTCCTGG
9
2
18
1
NC_032560.1
1,958
1,975
TTAATGAGG
9
2
18
0
NC_032531.1
698
713
CGATATAA
8
2
16
0
NC_032531.1
6,691
6,708
TTCTCCAAT
9
2
18
1
NC_032619.1
9,020
9,035
TTTATATA
8
2
16
0
NC_032547.1
1,084
1,099
GAAAATTT
8
2
16
0
NC_032547.1
7,739
7,756
CACTCAAGA
9
2
18
1
NC_032636.1
5,751
5,870
TTTGGAGACTTTAAATCCAATCCAGTTTCGAATCTGGGTTAACAAAATCGGCCATGTCAC
60
2
120
0
NC_032586.1
1,081
1,100
GAAAGATATC
10
2
20
0
NC_032586.1
4,753
4,768
AGGGCCCT
8
2
16
1
NC_032565.1
2,435
2,452
GATGAAATG
9
2
18
0
NC_032565.1
12,238
12,253
ATATTATT
8
2
16
1
NC_032594.1
84
227
CTCACTGTATAACTGAAATCCTGGTTAGGGAGCTGTACTAACTCGTTGCCAACTCGTAAAGTTGAAGACAGC
72
2
144
0
NC_032579.1
400
421
TGTATGAATGT
11
2
22
0
NC_032579.1
8,394
8,411
GAAGAAGAG
9
2
18
1
NC_033416.1
1
62
GGCTTAGTTTGTACGTGTTCTAATAACGTTC
31
2
62
0
NC_033416.1
7,251
7,274
TTTTAATTCTGT
12
2
24
1
NC_032807.1
532
549
TTGAAGACG
9
2
18
0
NC_033069.1
406
511
GATTGTCAAATAGTTAGCCCAACGTCTATTGTGATGCTGCTGAAATATTAAAC
53
2
106
0
NC_033069.1
3,482
3,499
TGGTTTAAG
9
2
18
1
NC_033119.1
644
727
AATTAAGGAAAACAAAAACCACAATGAACAAGTCACAATCAC
42
2
84
0
NC_032986.1
4,366
4,381
TATGTTGG
8
2
16
0
NC_032797.1
10,610
10,625
ATTTTCTT
8
2
16
0
NC_033053.1
11,163
11,178
TATAAAAA
8
2
16
0
NC_033053.1
11,196
11,213
ATAAAAACT
9
2
18
1
NC_032777.1
9,664
9,679
TCCTACAA
8
2
16
0
NC_033005.1
4,700
4,717
AAATTGTTA
9
2
18
0
NC_033005.1
11,978
12,001
TTTTTTTTAAAA
12
2
24
1
NC_033005.1
12,037
12,052
CAATTTTT
8
2
16
2
NC_033133.1
11,910
11,925
AAAATAGT
8
2
16
0
NC_033127.1
5,383
5,398
GTATGGCC
8
2
16
0
NC_032759.1
347
410
ACTGCGTTCTAGCTCTCGAACCAAATTGAGCA
32
2
64
0
NC_032759.1
9,840
9,855
TTTTAATA
8
2
16
1
NC_033026.1
224
239
TGTATGAA
8
2
16
0
NC_033226.1
6,184
6,199
CAAAGAAT
8
2
16
0
NC_032964.1
1,334
1,349
AGCCCCAC
8
2
16
0
NC_032964.1
4,208
4,223
TGTGTGAA
8
2
16
1
NC_032751.1
3,795
3,812
TTATGCTCA
9
2
18
0
NC_032758.1
170
185
TTTGAAAA
8
2
16
0
NC_032764.1
1,175
1,192
ATAAAAAAA
9
2
18
0
NC_032735.1
13,576
13,595
TTTAGTGTAT
10
2
20
0
NC_032735.1
16,113
16,128
AAAATAAT
8
2
16
1
NC_033153.1
2,002
2,017
TTAATCAA
8
2
16
0
NC_033153.1
2,934
2,951
ATTCAAGCG
9
2
18
1
NC_033027.1
5,105
5,120
AAGTATTT
8
2
16
0