Datasets:
ReaKal
/
hg38.trf.short

Dataset card Viewer Files Community
2
chromosome
stringclasses
1 value
start_position
int64
10k
6.9M
end_position
int64
10.5k
6.9M
computational_method
stringclasses
1 value
period_size
int64
1
12
copy_number
float64
2.1
884
consensus_size
int64
1
14
percent_matches
int64
61
100
percent_indels
int64
0
33
score
int64
50
1.2k
A
int64
0
100
C
int64
0
81
G
int64
0
84
T
int64
0
100
entropy_0-2
float64
0
2
sequence
stringlengths
1
14
chr1
4,496,898
4,496,931
trf
2
16.5
2
93
0
57
0
48
0
51
1
CT
chr1
4,508,575
4,508,611
trf
1
36
1
100
0
72
100
0
0
0
0
A
chr1
4,508,837
4,508,870
trf
5
6.6
5
92
0
57
0
75
0
24
0.8
CTCCC
chr1
4,508,868
4,508,932
trf
5
12.6
5
95
3
101
0
25
0
75
0.81
TCTTT
chr1
4,509,104
4,509,135
trf
2
15.5
2
100
0
62
0
0
48
51
1
TG
chr1
4,515,231
4,515,269
trf
11
3.5
11
100
0
76
23
31
26
18
1.97
CCCTGAGATAG
chr1
4,522,725
4,522,931
trf
4
51
4
85
11
271
28
23
0
47
1.56
ATCT
chr1
4,522,928
4,522,965
trf
2
18.5
2
100
0
74
0
48
0
51
1
TC
chr1
4,524,720
4,524,759
trf
3
13
3
88
0
60
33
0
33
33
1.58
TGA
chr1
4,531,703
4,531,755
trf
2
26.5
2
92
3
88
50
48
0
1
1.12
AC
chr1
4,538,771
4,538,803
trf
4
8
4
100
0
64
25
0
25
50
1.5
ATTG
chr1
4,539,843
4,539,870
trf
5
5.4
5
100
0
54
18
0
18
62
1.32
TTTAG
chr1
4,543,679
4,543,908
trf
4
58.8
4
73
13
165
24
24
5
45
1.73
TCTA
chr1
4,544,421
4,544,974
trf
6
93.5
6
67
16
172
55
12
29
2
1.49
AGAGAC
chr1
4,544,423
4,544,974
trf
10
56.7
10
68
15
182
55
12
29
2
1.49
AGACAGAGAC
chr1
4,544,437
4,544,902
trf
8
57.1
8
66
16
118
55
12
29
1
1.47
AGAGACAG
chr1
4,583,042
4,583,073
trf
2
15.5
2
100
0
62
0
51
0
48
1
CT
chr1
4,583,838
4,583,872
trf
2
17
2
100
0
68
50
0
0
50
1
AT
chr1
4,590,141
4,590,168
trf
1
27
1
100
0
54
0
0
0
100
0
T
chr1
4,607,039
4,607,074
trf
4
8.8
4
93
0
61
0
2
22
74
0.95
TTTG
chr1
4,618,282
4,618,327
trf
9
5
9
84
10
56
20
0
0
80
0.72
TTTATTATT
chr1
4,620,706
4,620,743
trf
5
7.6
5
96
3
67
83
0
0
16
0.64
AAAAT
chr1
4,629,637
4,629,662
trf
4
6.2
4
100
0
50
24
24
0
52
1.48
TCAT
chr1
4,632,533
4,633,446
trf
7
130.9
7
89
1
1,195
38
44
16
0
1.51
CACAGCA
chr1
4,639,231
4,639,263
trf
1
32
1
100
0
64
0
0
0
100
0
T
chr1
4,647,041
4,647,589
trf
3
182.7
3
72
0
198
13
1
49
35
1.53
TGG
chr1
4,651,882
4,651,919
trf
3
12.3
3
100
0
74
67
0
0
32
0.91
AAT
chr1
4,662,046
4,662,080
trf
2
17
2
93
0
59
0
2
47
50
1.16
TG
chr1
4,668,322
4,668,383
trf
2
31
2
80
3
70
0
6
47
45
1.28
TG
chr1
4,679,808
4,679,852
trf
2
22
2
100
0
88
0
0
50
50
1
GT
chr1
4,682,826
4,682,918
trf
6
15.3
6
77
13
73
16
1
45
36
1.54
TGGTGA
chr1
4,682,835
4,682,926
trf
9
10.1
9
79
4
76
18
1
43
36
1.58
TGATGGTGA
chr1
4,687,791
4,687,833
trf
8
5.2
8
80
11
50
26
38
0
35
1.57
CATCCATT
chr1
4,705,395
4,705,429
trf
1
34
1
100
0
68
0
0
0
100
0
T
chr1
4,709,208
4,709,285
trf
10
7.7
10
83
0
100
1
16
63
18
1.38
CTGGTGGGGG
chr1
4,709,399
4,709,442
trf
10
4.3
10
90
0
68
6
16
53
23
1.67
TGGTGAGGCC
chr1
4,713,154
4,713,180
trf
12
2.2
12
100
0
52
19
19
53
7
1.68
CATGGACGGGGG
chr1
4,716,488
4,716,746
trf
9
28.8
9
75
3
153
26
0
42
30
1.59
TGGTGATGA
chr1
4,716,491
4,716,801
trf
3
103.7
3
68
12
129
28
0
40
30
1.61
TGA
chr1
4,733,422
4,733,448
trf
4
6.5
4
100
0
52
26
26
0
46
1.53
CATT
chr1
4,737,257
4,737,283
trf
6
4.3
6
100
0
52
15
30
34
19
1.93
TGAGCC
chr1
4,737,904
4,737,935
trf
6
5.2
6
100
0
62
67
32
0
0
0.91
AAAACC
chr1
4,743,929
4,743,957
trf
9
3.1
9
100
0
56
10
42
25
21
1.85
GCTCTCCAG
chr1
4,744,625
4,744,653
trf
2
14
2
100
0
56
50
50
0
0
1
CA
chr1
4,748,747
4,748,774
trf
1
27
1
100
0
54
100
0
0
0
0
A
chr1
4,752,146
4,752,214
trf
3
22.7
3
78
21
72
32
0
67
0
0.91
GGA
chr1
4,760,193
4,760,374
trf
12
14.8
12
64
21
54
14
6
40
38
1.71
TGTGTGTGTGCA
chr1
4,760,381
4,760,421
trf
12
3.2
12
92
7
62
15
15
27
42
1.86
TGTGTTCATGCA
chr1
4,762,281
4,762,308
trf
12
2.2
12
100
0
54
22
29
22
25
1.99
CCTCAGGAATGT
chr1
4,763,701
4,763,833
trf
8
15.9
8
68
16
72
1
58
2
37
1.2
TCTCTCCC
chr1
4,763,887
4,763,924
trf
12
2.8
14
84
12
51
0
62
2
35
1.1
TCTCCCTCTCCTGC
chr1
4,767,210
4,767,738
trf
12
43.1
12
65
11
149
32
37
1
28
1.67
ATCATCACCATC
chr1
4,767,312
4,767,738
trf
6
70.8
6
67
7
94
32
38
0
27
1.63
CATCAC
chr1
4,767,471
4,767,732
trf
9
30.1
9
72
7
146
32
39
0
27
1.57
ATCACCATC
chr1
4,778,571
4,778,649
trf
2
39.5
2
89
2
113
0
51
1
47
1.09
TC
chr1
4,779,320
4,779,351
trf
12
2.6
12
89
0
53
0
9
0
90
0.46
TTTTTTTCTTTT
chr1
4,780,131
4,780,157
trf
1
26
1
100
0
52
100
0
0
0
0
A
chr1
4,780,601
4,780,647
trf
7
5.9
8
82
12
60
0
13
0
86
0.56
TTTTTTTC
chr1
4,782,565
4,782,603
trf
5
8
5
82
11
53
78
18
2
0
0.86
AAAAC
chr1
4,783,471
4,783,544
trf
2
36.5
2
94
0
92
41
0
6
52
1.28
TA
chr1
4,789,787
4,789,816
trf
5
5.8
5
100
0
58
0
0
17
82
0.66
TTTTG
chr1
4,790,916
4,790,960
trf
6
7.5
6
94
5
81
0
0
15
84
0.63
TTTTTG
chr1
4,807,634
4,807,659
trf
1
25
1
100
0
50
100
0
0
0
0
A
chr1
4,813,308
4,813,348
trf
2
20
2
100
0
80
50
50
0
0
1
AC
chr1
4,823,480
4,823,559
trf
10
7.9
10
78
15
76
37
10
11
40
1.75
TATATACGTA
chr1
4,823,495
4,823,557
trf
12
5.5
12
72
14
51
38
9
11
40
1.74
ATATACACGTAT
chr1
4,835,005
4,835,033
trf
2
14
2
100
0
56
0
50
0
50
1
CT
chr1
4,854,989
4,855,040
trf
6
8.2
6
78
8
57
29
21
1
47
1.62
TATATC
chr1
4,868,298
4,868,480
trf
12
14.8
12
66
14
52
2
49
2
45
1.31
CTCCTCCTCTTC
chr1
4,916,049
4,916,097
trf
2
24
2
91
8
80
0
2
47
50
1.12
TG
chr1
4,932,074
4,932,105
trf
2
15.5
2
100
0
62
48
0
0
51
1
TA
chr1
4,934,237
4,934,277
trf
10
4
10
87
6
55
87
0
12
0
0.54
AAAAGAAAAA
chr1
4,943,722
4,943,791
trf
4
17.5
4
96
3
131
49
0
26
24
1.51
GATA
chr1
4,950,531
4,950,558
trf
5
5.4
5
100
0
54
81
0
0
18
0.69
AAAAT
chr1
4,959,869
4,959,907
trf
12
3.3
12
82
14
53
31
0
68
0
0.9
GAAGGGGAGGGG
chr1
4,959,869
4,959,991
trf
10
12.5
10
70
16
51
34
0
64
0
0.99
GAAGGGGAGG
chr1
4,959,923
4,959,977
trf
5
10.8
5
79
0
63
27
1
70
0
0.98
GGAGG
chr1
4,964,312
4,964,391
trf
10
7.8
10
80
2
86
0
43
3
53
1.19
TCTCTCTCTT
chr1
4,964,312
4,964,391
trf
4
20
4
82
2
79
0
43
3
53
1.19
TCTC
chr1
4,964,312
4,964,391
trf
6
13.3
6
79
2
79
0
43
3
53
1.19
TCTCTC
chr1
4,969,137
4,969,253
trf
5
23.4
5
77
11
78
29
0
68
1
1.06
GGGAA
chr1
4,987,867
4,987,915
trf
2
24
2
91
0
78
2
2
47
47
1.25
TG
chr1
4,996,209
4,996,347
trf
4
33.8
4
88
4
195
0
26
0
73
0.84
TTTC
chr1
5,008,231
5,008,276
trf
2
22.5
2
100
0
90
0
0
48
51
1
TG
chr1
5,008,273
5,008,299
trf
4
6.5
4
100
0
52
0
23
26
50
1.5
TGTC
chr1
5,008,757
5,008,789
trf
2
16
2
100
0
64
0
0
50
50
1
GT
chr1
5,008,981
5,009,014
trf
4
8.2
4
93
0
57
27
0
48
24
1.51
GGAT
chr1
5,011,412
5,011,465
trf
1
53
1
76
0
52
88
11
0
0
0.51
A
chr1
5,021,602
5,021,637
trf
11
3.3
11
92
4
54
2
11
0
85
0.69
TTTCTTTCTTT
chr1
5,022,498
5,022,535
trf
2
18.5
2
100
0
74
51
48
0
0
1
AC
chr1
5,024,704
5,024,739
trf
4
8.8
4
100
0
70
77
0
0
22
0.78
AAAT
chr1
5,030,621
5,030,718
trf
12
8
12
68
11
63
35
3
39
22
1.7
GATGGATGGATG
chr1
5,030,621
5,030,718
trf
8
12
8
73
10
63
35
3
39
22
1.7
GATGGATG
chr1
5,030,674
5,030,718
trf
4
11
4
80
0
52
31
2
43
22
1.66
GATG
chr1
5,037,647
5,037,683
trf
2
18
2
94
0
63
0
47
2
50
1.15
TC
chr1
5,063,293
5,063,319
trf
1
26
1
100
0
52
0
0
0
100
0
T
chr1
5,069,497
5,069,550
trf
4
13
4
80
11
63
50
3
0
45
1.19
TTAA
chr1
5,072,232
5,072,274
trf
4
11
4
90
10
70
0
0
23
76
0.79
GTTT
chr1
5,075,383
5,075,868
trf
12
37.4
13
67
23
185
46
3
3
47
1.34
TATATATTATATA
chr1
5,075,383
5,075,868
trf
2
265.5
2
61
24
130
46
3
3
47
1.34
TA