Datasets:
ReaKal
/
hg38.trf.short

Dataset card Viewer Files Community
2
chromosome
stringclasses
1 value
start_position
int64
10k
6.9M
end_position
int64
10.5k
6.9M
computational_method
stringclasses
1 value
period_size
int64
1
12
copy_number
float64
2.1
884
consensus_size
int64
1
14
percent_matches
int64
61
100
percent_indels
int64
0
33
score
int64
50
1.2k
A
int64
0
100
C
int64
0
81
G
int64
0
84
T
int64
0
100
entropy_0-2
float64
0
2
sequence
stringlengths
1
14
chr1
3,114,138
3,114,237
trf
8
12
8
82
9
101
38
48
12
1
1.47
CACACGCA
chr1
3,114,138
3,114,322
trf
10
18.3
10
68
13
101
36
44
15
3
1.62
CACACGCACA
chr1
3,114,479
3,114,540
trf
8
7.4
8
72
7
50
37
42
14
4
1.68
ACACGCAC
chr1
3,114,510
3,114,560
trf
8
6.5
8
75
9
50
42
38
12
8
1.71
CACACATG
chr1
3,152,280
3,152,427
trf
4
36.8
4
83
0
168
23
42
0
33
1.6
CATC
chr1
3,158,654
3,158,781
trf
4
31.8
4
76
16
113
0
28
0
71
0.86
TTTC
chr1
3,173,943
3,173,969
trf
12
2.2
12
100
0
52
7
30
38
23
1.83
GGCCCGTGCTAT
chr1
3,175,983
3,176,013
trf
4
7.5
4
100
0
60
26
50
23
0
1.5
CAGC
chr1
3,176,028
3,176,347
trf
4
80
4
69
9
168
24
44
1
29
1.64
ATCC
chr1
3,176,592
3,176,777
trf
4
46.8
4
72
6
135
22
43
2
31
1.65
TCCA
chr1
3,176,895
3,176,935
trf
12
3.3
12
85
0
62
25
52
0
22
1.47
CCATCCATCCAC
chr1
3,180,162
3,180,204
trf
7
5.9
7
78
15
50
0
2
19
78
0.86
TGTTTTT
chr1
3,180,968
3,181,932
trf
12
75.7
11
78
14
297
25
32
16
24
1.96
CGGTCTTAACA
chr1
3,181,916
3,182,035
trf
10
10.8
10
72
21
80
30
31
10
26
1.91
CTTACACATG
chr1
3,200,909
3,201,011
trf
3
33.7
3
69
16
59
41
0
57
0
1.05
GAG
chr1
3,202,335
3,202,394
trf
10
5.9
10
83
0
82
13
11
62
11
1.54
GCTGGGGGAG
chr1
3,208,664
3,208,702
trf
5
7.6
5
96
0
58
86
0
13
0
0.56
AAAAG
chr1
3,211,792
3,211,840
trf
10
5
10
80
10
55
8
25
39
27
1.84
GCGTGTGCAT
chr1
3,223,103
3,223,128
trf
1
25
1
100
0
50
0
0
0
100
0
T
chr1
3,225,530
3,225,574
trf
2
22
2
100
0
88
0
0
50
50
1
TG
chr1
3,239,945
3,240,138
trf
5
38.6
5
80
13
71
53
0
45
1
1.07
AGAGA
chr1
3,240,012
3,240,108
trf
5
19.8
5
87
10
146
42
0
57
0
0.98
GGAGA
chr1
3,273,817
3,273,851
trf
2
17
2
100
0
68
0
0
50
50
1
GT
chr1
3,277,711
3,277,772
trf
8
7.6
8
73
0
50
34
47
14
3
1.61
CACACGCA
chr1
3,277,711
3,277,783
trf
12
6
12
75
0
72
36
47
13
2
1.58
CACACGCACACA
chr1
3,277,719
3,277,795
trf
10
7.8
10
77
5
75
36
46
13
3
1.61
CACACACACG
chr1
3,301,332
3,301,362
trf
12
2.6
12
94
5
53
93
0
6
0
0.35
AAAAAAGAAAAA
chr1
3,316,265
3,316,301
trf
6
6
6
93
0
63
2
0
80
16
0.83
GTGGGG
chr1
3,324,161
3,324,186
trf
12
2.1
12
100
0
50
0
60
8
32
1.26
CTCCGTCTCTCC
chr1
3,325,778
3,326,226
trf
10
45.1
10
74
3
312
8
43
19
28
1.81
CCATCCTTGG
chr1
3,335,602
3,335,642
trf
2
20
2
100
0
80
50
50
0
0
1
AC
chr1
3,365,898
3,365,998
trf
10
10.8
10
71
20
67
41
41
11
7
1.67
TGCACACACA
chr1
3,365,902
3,365,968
trf
8
7.8
8
77
12
69
40
40
10
7
1.68
CACACATG
chr1
3,365,902
3,365,986
trf
8
9.8
8
74
14
60
40
42
10
5
1.64
CACACACG
chr1
3,365,917
3,366,018
trf
10
10.5
10
68
7
57
40
42
11
4
1.63
ACACACACGC
chr1
3,370,814
3,371,606
trf
4
201.5
4
74
7
460
25
46
2
25
1.63
ATCC
chr1
3,373,919
3,373,953
trf
10
3.4
10
91
0
59
44
41
14
0
1.45
ACCAGAGCCA
chr1
3,386,142
3,386,172
trf
9
3.3
9
95
0
51
0
36
53
10
1.35
CGGGGTGCC
chr1
3,388,269
3,388,321
trf
2
26
2
80
0
59
0
44
3
51
1.19
CT
chr1
3,409,646
3,410,190
trf
2
286.5
2
67
14
249
5
3
49
42
1.42
TG
chr1
3,421,851
3,422,386
trf
12
44
12
69
13
238
38
20
37
3
1.7
GCAGACAGACAG
chr1
3,421,852
3,422,317
trf
4
115.5
4
71
7
138
39
20
37
3
1.69
CAGA
chr1
3,424,789
3,424,820
trf
12
2.5
12
94
5
53
9
16
51
22
1.73
GGGAGCTGGTCT
chr1
3,449,975
3,450,038
trf
2
31.5
2
83
0
63
3
7
42
46
1.49
TG
chr1
3,485,931
3,485,968
trf
1
37
1
100
0
74
100
0
0
0
0
A
chr1
3,487,133
3,487,180
trf
2
23
2
95
4
85
48
2
0
48
1.13
AT
chr1
3,503,467
3,503,502
trf
11
3.2
11
87
0
52
28
11
60
0
1.32
GCAGAGGAGGA
chr1
3,513,577
3,513,606
trf
1
29
1
100
0
58
0
0
0
100
0
T
chr1
3,538,696
3,538,745
trf
2
24.5
2
100
0
98
0
0
48
51
1
TG
chr1
3,559,111
3,559,136
trf
9
2.8
9
100
0
50
12
20
48
20
1.8
CTGGGAGCT
chr1
3,559,522
3,559,547
trf
1
25
1
100
0
50
100
0
0
0
0
A
chr1
3,605,082
3,605,216
trf
10
13
10
65
20
53
38
44
2
14
1.6
CACACACACT
chr1
3,605,447
3,605,520
trf
10
7.7
10
73
11
64
46
32
1
19
1.58
ATACACACAT
chr1
3,610,469
3,610,502
trf
3
11.3
3
93
6
59
0
69
0
30
0.88
CTC
chr1
3,661,722
3,661,861
trf
11
12.5
11
69
15
65
45
7
3
43
1.48
TATATATTATA
chr1
3,661,722
3,661,861
trf
2
72
2
69
14
87
45
7
3
43
1.48
TA
chr1
3,661,872
3,661,906
trf
7
5.1
7
86
13
54
14
0
0
85
0.6
TATTTTT
chr1
3,661,872
3,661,909
trf
12
3.2
12
85
14
51
16
0
0
83
0.64
TATTTTTTATTT
chr1
3,666,124
3,666,151
trf
1
27
1
100
0
54
100
0
0
0
0
A
chr1
3,667,749
3,667,793
trf
8
5.8
8
86
2
56
86
0
11
2
0.66
AAAAAGAA
chr1
3,668,515
3,668,547
trf
2
16
2
100
0
64
0
0
50
50
1
GT
chr1
3,676,121
3,676,177
trf
11
4.5
12
81
18
62
30
10
57
1
1.43
GGGACAGAGGAG
chr1
3,679,439
3,680,122
trf
10
67.9
10
66
15
108
1
36
11
50
1.45
TCTCTGTCTG
chr1
3,702,466
3,702,496
trf
7
4.3
7
100
0
60
13
73
13
0
1.1
CCCCAGC
chr1
3,705,744
3,705,781
trf
12
3.2
12
92
3
58
32
18
35
13
1.9
ACTCAGTAGAGG
chr1
3,707,812
3,707,839
trf
7
3.9
7
100
0
54
0
25
59
14
1.36
GGGCTGC
chr1
3,719,890
3,719,936
trf
2
23
2
100
0
92
0
0
50
50
1
TG
chr1
3,725,376
3,726,938
trf
4
390.8
4
71
13
385
20
0
52
26
1.52
TGGA
chr1
3,728,992
3,729,023
trf
8
3.9
8
95
0
53
51
6
41
0
1.27
AGAGAGAC
chr1
3,728,992
3,729,029
trf
10
3.9
10
82
13
51
51
8
40
0
1.32
AGAGACAGAG
chr1
3,734,888
3,734,919
trf
10
3.1
10
90
0
53
6
48
12
32
1.67
TCCTTCCAGC
chr1
3,735,382
3,735,408
trf
9
2.9
9
100
0
52
0
11
76
11
1.01
GGGCTGGGG
chr1
3,744,499
3,744,529
trf
4
7.2
4
92
7
51
73
0
3
23
0.98
ATAA
chr1
3,747,741
3,747,782
trf
7
5.9
7
88
8
57
0
0
24
75
0.8
GTTTTTG
chr1
3,751,982
3,752,028
trf
12
3.7
13
83
16
62
0
13
0
86
0.56
TTTTCTTTTCTTT
chr1
3,751,982
3,752,035
trf
8
7.1
8
76
23
62
0
13
0
86
0.56
TTTTCTTT
chr1
3,753,306
3,753,340
trf
1
34
1
87
0
50
0
5
0
94
0.32
T
chr1
3,772,951
3,772,976
trf
12
2.1
12
100
0
50
0
48
28
24
1.52
GCCCGGCTCCTT
chr1
3,797,843
3,797,868
trf
4
6.2
4
100
0
50
24
0
0
76
0.8
TTAT
chr1
3,799,550
3,799,584
trf
1
34
1
100
0
68
100
0
0
0
0
A
chr1
3,799,761
3,799,815
trf
10
5.3
10
79
2
54
11
61
9
18
1.55
CCCTGCACCC
chr1
3,807,443
3,807,474
trf
4
7.8
4
100
0
62
22
0
0
77
0.77
TTTA
chr1
3,812,857
3,812,890
trf
6
5.7
6
85
7
50
84
15
0
0
0.61
AAAACA
chr1
3,812,857
3,812,892
trf
11
3.1
11
91
4
52
85
14
0
0
0.59
AAAACAAAAAA
chr1
3,856,800
3,856,847
trf
7
6.3
7
85
11
58
0
70
27
2
0.99
CCGCGCC
chr1
3,859,907
3,860,003
trf
10
9.5
10
73
10
79
2
40
12
44
1.54
TCTCTCTCTG
chr1
3,859,936
3,859,999
trf
6
10
6
78
10
63
0
38
14
47
1.44
GTCTCT
chr1
3,859,937
3,860,003
trf
2
33.5
2
72
3
53
0
39
12
48
1.4
TC
chr1
3,868,591
3,868,718
trf
5
25.4
5
78
3
130
36
53
8
1
1.41
ACACC
chr1
3,898,516
3,898,554
trf
3
12.7
3
100
0
76
68
31
0
0
0.9
AAC
chr1
3,908,354
3,908,462
trf
2
54
2
87
3
155
0
45
3
50
1.19
TC
chr1
3,908,461
3,908,500
trf
2
19.5
2
100
0
78
48
51
0
0
1
CA
chr1
3,920,080
3,920,614
trf
4
133.2
4
74
8
127
0
58
0
39
1.07
CCCT
chr1
3,920,083
3,920,614
trf
12
43.5
12
67
15
166
0
58
0
39
1.07
TCCCTCCCTCCT
chr1
3,923,019
3,923,057
trf
12
3.2
12
88
0
58
23
15
52
7
1.69
GGCAGAGGTCAG
chr1
3,926,705
3,926,771
trf
4
16.5
4
83
0
87
24
45
0
30
1.53
TCCA
chr1
3,926,942
3,927,531
trf
4
145.2
4
75
20
355
25
24
6
42
1.79
ATCT
chr1
3,929,137
3,930,779
trf
7
228
7
67
20
625
49
42
2
6
1.39
ACACACA
chr1
3,929,137
3,930,790
trf
11
148.6
11
68
20
634
49
42
2
6
1.39
ACACACACAAC
chr1
3,929,152
3,930,779
trf
9
177.8
9
69
19
666
49
42
1
6
1.39
ACACACAAC