Datasets:

ReaKal
/

hg38.trf.short

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train · 1k rows

chromosome stringclasses 1 value	start_position int64 10k 6.9M	end_position int64 10.5k 6.9M	computational_method stringclasses 1 value	period_size int64 1 12	copy_number float64 2.1 884	consensus_size int64 1 14	percent_matches int64 61 100	percent_indels int64 0 33	score int64 50 1.2k	A int64 0 100	C int64 0 81	G int64 0 84	T int64 0 100	entropy_0-2 float64 0 2	sequence stringlengths 1 14
chr1	5,701,724	5,701,827	trf	4	25.5	4	76	9	93	66	0	32	0	0.98	GAAA
chr1	5,701,828	5,701,913	trf	4	21.2	4	92	0	134	48	0	51	0	1	AGGA
chr1	5,702,710	5,702,738	trf	1	28	1	100	0	56	0	0	0	100	0	T
chr1	5,710,670	5,710,850	trf	4	44.8	4	72	17	97	42	1	54	1	1.2	GAAG
chr1	5,722,401	5,722,457	trf	2	28	2	96	0	103	50	1	0	48	1.11	AT
chr1	5,730,491	5,730,524	trf	4	8.2	4	100	0	66	24	0	48	27	1.51	TGAG
chr1	5,730,521	5,730,552	trf	4	7.8	4	100	0	62	25	22	25	25	2	AGTC
chr1	5,736,192	5,736,252	trf	4	15	4	89	0	93	51	0	48	0	1	GAAG
chr1	5,736,292	5,736,338	trf	4	11.5	4	86	9	58	21	0	54	23	1.45	GATG
chr1	5,736,339	5,736,477	trf	4	34.8	4	87	7	102	47	8	18	24	1.77	AGAT
chr1	5,737,020	5,737,478	trf	11	40.9	11	70	12	256	31	1	42	25	1.64	TGGATGGATGA
chr1	5,737,020	5,737,482	trf	4	123.5	4	68	13	243	30	1	42	25	1.64	TGGA
chr1	5,737,624	5,737,885	trf	4	68.5	4	70	12	165	27	1	42	28	1.63	TGGA
chr1	5,737,632	5,737,870	trf	11	21.5	11	70	14	118	28	1	42	28	1.64	GGATGGATGAT
chr1	5,737,737	5,737,813	trf	7	10.9	7	77	16	68	34	1	35	28	1.66	ATGGATA
chr1	5,738,022	5,738,102	trf	4	21.2	4	76	12	71	25	3	46	25	1.69	TGGA
chr1	5,738,035	5,738,130	trf	11	8.8	11	74	13	74	26	4	45	24	1.71	GATGATGGATG
chr1	5,744,091	5,744,324	trf	4	58.2	4	86	0	259	0	64	0	35	0.94	TCCC
chr1	5,744,762	5,744,923	trf	8	20.9	8	68	16	54	52	31	13	3	1.55	ACACACAG
chr1	5,744,770	5,744,927	trf	12	13.6	12	72	11	96	51	31	13	3	1.56	ACACACAGACAC
chr1	5,746,659	5,746,686	trf	9	3	9	100	0	54	11	44	22	22	1.84	GGCTTCCCA
chr1	5,747,518	5,747,925	trf	8	54.7	7	67	19	132	37	1	60	0	1.1	AGGGAGG
chr1	5,747,594	5,747,925	trf	4	84.2	4	70	13	161	37	0	61	0	1.05	AGGG
chr1	5,749,586	5,749,838	trf	8	30.5	8	68	15	93	50	14	32	1	1.54	GAGACAGA
chr1	5,749,618	5,749,848	trf	10	23.4	10	71	7	121	51	15	31	1	1.53	GAGAGACACA
chr1	5,749,735	5,749,830	trf	12	8.8	12	70	21	66	50	13	32	3	1.57	ACAGAGAGAGAT
chr1	5,749,958	5,750,009	trf	10	4.9	10	75	17	50	49	13	35	1	1.54	AGACAGAGAC
chr1	5,750,545	5,750,601	trf	4	14	4	84	0	76	0	28	21	50	1.49	TCTG
chr1	5,757,894	5,757,930	trf	2	18	2	91	0	54	52	44	0	2	1.15	CA
chr1	5,767,903	5,767,966	trf	10	6.7	9	72	27	51	17	55	11	15	1.68	ACACCTGCC
chr1	5,767,907	5,767,959	trf	9	5.6	9	75	24	54	13	55	13	17	1.69	CTGCCACCT
chr1	5,767,930	5,767,973	trf	12	4	12	72	27	51	16	58	9	16	1.63	CACCTCTGCCCA
chr1	5,770,589	5,770,618	trf	1	29	1	100	0	58	100	0	0	0	0	A
chr1	5,773,324	5,773,372	trf	4	12	4	100	0	96	75	0	0	25	0.81	AAAT
chr1	5,777,156	5,777,194	trf	1	38	1	100	0	76	100	0	0	0	0	A
chr1	5,802,783	5,802,901	trf	12	9.6	12	77	5	128	33	38	2	26	1.7	CCATCATCATCA
chr1	5,802,787	5,802,901	trf	9	12.7	9	71	14	74	33	37	2	26	1.7	CATCATCAC
chr1	5,803,252	5,803,292	trf	2	20	2	89	0	62	55	45	0	0	0.99	AC
chr1	5,804,351	5,804,517	trf	4	41	4	69	11	61	24	43	2	29	1.67	CCAT
chr1	5,806,171	5,806,204	trf	2	16.5	2	100	0	66	51	48	0	0	1	AC
chr1	5,809,133	5,809,185	trf	11	5.2	11	71	21	51	30	44	7	17	1.77	CACATGCCACT
chr1	5,813,607	5,813,755	trf	3	48.3	3	82	4	179	35	4	59	1	1.25	GGA
chr1	5,821,297	5,821,329	trf	9	3.7	9	95	4	57	68	0	31	0	0.9	AGAAAGGAA
chr1	5,821,342	5,821,384	trf	4	10.5	4	94	0	75	28	0	71	0	0.86	GAGG
chr1	5,821,342	5,821,424	trf	12	6.8	12	95	0	92	39	0	60	0	0.96	GAGGGAAGGAAG
chr1	5,821,345	5,821,420	trf	8	9.4	8	97	0	87	38	0	61	0	0.96	GGAGGGAA
chr1	5,821,373	5,821,478	trf	4	26	4	83	9	97	52	0	47	0	1	GGAA
chr1	5,821,381	5,821,491	trf	12	8.8	12	75	9	76	54	0	44	0	1.06	GGAAGGAAAGAA
chr1	5,825,868	5,825,906	trf	5	7.4	5	85	14	51	78	0	0	21	0.74	AATAA
chr1	5,829,605	5,829,874	trf	12	22.2	12	70	8	150	18	1	46	33	1.58	TGGTGATGGTGA
chr1	5,831,469	5,831,497	trf	12	2.3	12	100	0	56	17	53	14	14	1.73	CCACCGTCACTG
chr1	5,832,248	5,832,358	trf	7	15.7	7	78	0	112	9	14	60	16	1.59	GCTGGGG
chr1	5,868,715	5,869,269	trf	10	47.8	12	66	21	142	35	43	9	10	1.73	CACACATGCACC
chr1	5,868,761	5,869,249	trf	10	47.2	10	69	20	210	36	44	9	10	1.71	CATGCACACA
chr1	5,869,015	5,869,137	trf	8	15.9	8	63	14	51	34	42	11	11	1.77	CACACATG
chr1	5,869,322	5,869,385	trf	12	5.5	12	75	9	60	39	46	7	6	1.59	ACACACACATGC
chr1	5,876,222	5,876,252	trf	4	7.5	4	92	0	51	26	0	73	0	0.84	GGGA
chr1	5,879,777	5,879,892	trf	4	28.8	4	74	0	104	46	44	8	0	1.4	CACA
chr1	5,880,007	5,880,041	trf	12	2.8	12	90	0	59	41	44	8	5	1.6	CACACACACATG
chr1	5,912,537	5,912,580	trf	7	6.4	7	94	2	63	88	0	9	2	0.6	AAAAAAG
chr1	5,914,257	5,914,286	trf	1	29	1	100	0	58	100	0	0	0	0	A
chr1	5,915,202	5,915,232	trf	7	4.3	7	100	0	60	0	26	46	26	1.53	GGCCTTG
chr1	5,931,733	5,931,758	trf	1	25	1	100	0	50	100	0	0	0	0	A
chr1	5,941,289	5,941,314	trf	1	25	1	100	0	50	100	0	0	0	0	A
chr1	5,949,343	5,949,370	trf	2	13.5	2	100	0	54	51	48	0	0	1	AC
chr1	5,952,554	5,952,626	trf	10	7.2	10	73	17	69	13	70	5	9	1.31	CCCTGCCCCA
chr1	5,964,843	5,964,942	trf	2	51.5	2	79	11	82	49	5	1	44	1.31	TA
chr1	5,991,921	5,991,958	trf	7	5.3	7	100	0	74	16	16	67	0	1.23	CAGGGGG
chr1	6,001,296	6,001,357	trf	2	31	2	88	3	79	45	49	1	3	1.28	CA
chr1	6,007,500	6,007,538	trf	11	3.5	11	88	0	58	2	57	21	18	1.52	GCGCCTCCTCT
chr1	6,012,108	6,012,698	trf	12	45.3	12	67	16	231	20	2	58	18	1.5	GGTGGAGGTGGA
chr1	6,015,016	6,015,049	trf	1	33	1	93	0	57	0	0	3	96	0.2	T
chr1	6,017,406	6,017,439	trf	2	16.5	2	100	0	66	0	0	48	51	1	TG
chr1	6,027,219	6,027,274	trf	2	27.5	2	100	0	110	0	0	50	49	1	GT
chr1	6,030,448	6,030,902	trf	8	56.1	8	67	22	170	14	1	36	46	1.57	GTGTATGT
chr1	6,030,496	6,030,902	trf	10	40.2	10	72	16	232	15	1	35	47	1.54	TGTGTGTATG
chr1	6,033,195	6,033,451	trf	12	20.2	12	65	20	67	8	10	42	38	1.7	TGTGCGTGTGTG
chr1	6,040,350	6,040,383	trf	4	8.5	4	86	6	50	0	27	24	48	1.51	TGTC
chr1	6,088,703	6,088,732	trf	3	9.7	3	100	0	58	68	0	0	31	0.89	AAT
chr1	6,106,793	6,108,937	trf	8	254.8	8	67	17	598	30	1	52	14	1.5	GGAGGGAT
chr1	6,106,990	6,108,585	trf	11	155.1	11	65	22	418	31	1	51	15	1.51	GATGGAGGGAT
chr1	6,119,718	6,119,828	trf	12	8.8	12	75	7	85	34	15	16	33	1.9	ATATATACGTAC
chr1	6,119,783	6,119,834	trf	12	4.2	12	87	0	57	35	11	13	39	1.82	TATATACGTATA
chr1	6,132,880	6,132,910	trf	2	15	2	100	0	60	0	50	0	50	1	TC
chr1	6,139,218	6,139,251	trf	3	11.3	3	93	6	59	0	0	30	69	0.88	TGT
chr1	6,140,967	6,141,001	trf	3	11.3	3	100	0	68	67	0	0	32	0.91	AAT
chr1	6,141,289	6,141,326	trf	3	12	3	94	5	65	64	0	0	35	0.94	AAT
chr1	6,149,645	6,149,747	trf	8	12.5	8	69	12	55	38	2	36	22	1.7	GATGAATG
chr1	6,149,658	6,150,610	trf	4	240.5	4	68	7	386	34	4	40	21	1.73	ATGG
chr1	6,150,562	6,150,610	trf	7	6.4	7	79	11	51	29	2	43	25	1.66	GATGATG
chr1	6,153,827	6,153,856	trf	5	5.8	5	100	0	58	79	20	0	0	0.74	CAAAA
chr1	6,155,876	6,155,906	trf	8	3.8	8	95	0	51	13	60	23	3	1.48	AGCCCCGC
chr1	6,159,227	6,159,259	trf	2	16	2	100	0	64	50	50	0	0	1	CA
chr1	6,174,390	6,175,615	trf	4	320.8	4	71	13	789	25	2	47	25	1.63	ATGG
chr1	6,175,681	6,175,727	trf	4	11.5	4	95	0	65	26	6	47	19	1.73	ATGG
chr1	6,202,748	6,202,775	trf	1	27	1	100	0	54	0	0	0	100	0	T
chr1	6,229,783	6,229,824	trf	2	20.5	2	100	0	82	51	48	0	0	1	AC
chr1	6,235,680	6,235,711	trf	10	3.1	10	100	0	62	0	70	29	0	0.87	CCCCGCCGGC
chr1	6,240,862	6,240,890	trf	1	28	1	100	0	56	0	0	0	100	0	T
chr1	6,244,972	6,245,081	trf	5	21.8	5	73	14	75	1	70	0	27	0.97	TCCCC