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--- |
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library_name: transformers |
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base_model: dmis-lab/biobert-base-cased-v1.2 |
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tags: |
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- generated_from_trainer |
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metrics: |
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- precision |
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- recall |
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- f1 |
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- accuracy |
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model-index: |
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- name: BioBERT-full-finetuned-ner-pablo |
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results: [] |
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--- |
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You |
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should probably proofread and complete it, then remove this comment. --> |
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# BioBERT-full-finetuned-ner-pablo |
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This model is a fine-tuned version of [dmis-lab/biobert-base-cased-v1.2](https://huggingface.co/dmis-lab/biobert-base-cased-v1.2) on the None dataset. |
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It achieves the following results on the evaluation set: |
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- Loss: 0.1081 |
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- Precision: 0.8057 |
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- Recall: 0.8003 |
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- F1: 0.8030 |
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- Accuracy: 0.9743 |
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## Model description |
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More information needed |
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## Intended uses & limitations |
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More information needed |
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## Training and evaluation data |
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More information needed |
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## Training procedure |
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### Training hyperparameters |
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The following hyperparameters were used during training: |
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- learning_rate: 0.0002 |
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- train_batch_size: 16 |
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- eval_batch_size: 16 |
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- seed: 42 |
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- gradient_accumulation_steps: 4 |
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- total_train_batch_size: 64 |
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08 |
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- lr_scheduler_type: linear |
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- lr_scheduler_warmup_ratio: 0.05 |
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- num_epochs: 5 |
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- mixed_precision_training: Native AMP |
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### Training results |
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| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy | |
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|:-------------:|:------:|:----:|:---------------:|:---------:|:------:|:------:|:--------:| |
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| No log | 0.9970 | 252 | 0.0943 | 0.7586 | 0.7859 | 0.7720 | 0.9732 | |
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| 0.1716 | 1.9980 | 505 | 0.0917 | 0.7950 | 0.7738 | 0.7843 | 0.9745 | |
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| 0.1716 | 2.9990 | 758 | 0.0886 | 0.7956 | 0.7925 | 0.7940 | 0.9742 | |
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| 0.0465 | 4.0 | 1011 | 0.0956 | 0.8055 | 0.7971 | 0.8013 | 0.9743 | |
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| 0.0465 | 4.9852 | 1260 | 0.1081 | 0.8057 | 0.8003 | 0.8030 | 0.9743 | |
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### Framework versions |
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- Transformers 4.44.2 |
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- Pytorch 2.4.0+cu121 |
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- Datasets 2.21.0 |
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- Tokenizers 0.19.1 |
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