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--- |
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dataset_info: |
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features: |
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- name: '#genome' |
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dtype: string |
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- name: asm_name |
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dtype: string |
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- name: assembly_accession |
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dtype: string |
|
- name: bioproject |
|
dtype: string |
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- name: biosample |
|
dtype: string |
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- name: wgs_master |
|
dtype: float64 |
|
- name: seq_rel_date |
|
dtype: string |
|
- name: submitter |
|
dtype: string |
|
- name: ftp_path |
|
dtype: string |
|
- name: img_id |
|
dtype: float64 |
|
- name: gtdb_id |
|
dtype: string |
|
- name: scope |
|
dtype: string |
|
- name: assembly_level |
|
dtype: string |
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- name: genome_rep |
|
dtype: string |
|
- name: refseq_category |
|
dtype: string |
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- name: release_type |
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dtype: string |
|
- name: taxid |
|
dtype: float64 |
|
- name: species_taxid |
|
dtype: float64 |
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- name: organism_name |
|
dtype: string |
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- name: infraspecific_name |
|
dtype: string |
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- name: isolate |
|
dtype: string |
|
- name: superkingdom |
|
dtype: string |
|
- name: phylum |
|
dtype: string |
|
- name: class |
|
dtype: string |
|
- name: order |
|
dtype: string |
|
- name: family |
|
dtype: string |
|
- name: genus |
|
dtype: string |
|
- name: species |
|
dtype: string |
|
- name: classified |
|
dtype: bool |
|
- name: lv1_group |
|
dtype: string |
|
- name: lv2_group |
|
dtype: string |
|
- name: score_faa |
|
dtype: float64 |
|
- name: score_fna |
|
dtype: float64 |
|
- name: score_rrna |
|
dtype: float64 |
|
- name: score_trna |
|
dtype: float64 |
|
- name: total_length |
|
dtype: float64 |
|
- name: contigs |
|
dtype: float64 |
|
- name: gc |
|
dtype: float64 |
|
- name: n50 |
|
dtype: float64 |
|
- name: l50 |
|
dtype: float64 |
|
- name: proteins |
|
dtype: float64 |
|
- name: protein_length |
|
dtype: float64 |
|
- name: coding_density |
|
dtype: float64 |
|
- name: completeness |
|
dtype: float64 |
|
- name: contamination |
|
dtype: float64 |
|
- name: strain_heterogeneity |
|
dtype: float64 |
|
- name: markers |
|
dtype: float64 |
|
- name: 5s_rrna |
|
dtype: string |
|
- name: 16s_rrna |
|
dtype: string |
|
- name: 23s_rrna |
|
dtype: string |
|
- name: trnas |
|
dtype: float64 |
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- name: draft_quality |
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dtype: string |
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- name: start_position |
|
dtype: int64 |
|
- name: human_label |
|
dtype: int64 |
|
- name: autotrain_text |
|
dtype: string |
|
- name: autotrain_label |
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dtype: |
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class_label: |
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names: |
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'0': Acetobacter pasteurianus IFO 3283-01 IFO 3283 substr. IFO 3283-01 |
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'1': Alcanivorax borkumensis SK2 |
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'2': Aquifex aeolicus VF5 |
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'3': Archaeoglobus fulgidus DSM 4304 |
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'4': Azorhizobium caulinodans ORS 571 |
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'5': Bacillus anthracis str. Ames |
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'6': Bacillus anthracis str. Sterne ASM816v1 |
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'7': Bacillus cereus ATCC 14579 |
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'8': Bacillus clausii KSM-K16 |
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'9': Bacillus pseudofirmus OF4 |
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'10': Bacteroides fragilis YCH46 |
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'11': Bacteroides thetaiotaomicron VPI-5482 |
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'12': Bifidobacterium adolescentis ATCC 15703 |
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'13': Bifidobacterium longum NCC2705 |
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'14': Borrelia burgdorferi B31 |
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'15': Brevibacillus brevis NBRC 100599 |
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'16': Buchnera aphidicola str. Bp (Baizongia pistaciae) |
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'17': Buchnera aphidicola str. Sg (Schizaphis graminum) Sg |
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'18': Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
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'19': Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 |
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'20': Candidatus Vesicomyosocius okutanii HA |
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'21': Chlamydia felis Fe/C-56 |
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'22': Chlamydia trachomatis D/UW-3/CX |
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'23': Chlamydophila caviae GPIC |
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'24': Chlamydophila pneumoniae CWL029 |
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'25': Chlamydophila pneumoniae TW-183 |
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'26': Chlorobium tepidum TLS |
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'27': Chromobacterium violaceum ATCC 12472 |
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'28': Clostridioides difficile 630 ASM920v1 |
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'29': Clostridium acetobutylicum ATCC 824 |
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'30': Clostridium tetani E88 Massachusetts substr. E88 |
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'31': Corynebacterium jeikeium K411 K411 = NCTC 11915 |
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'32': Coxiella burnetii RSA 493 ASM776v1 |
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'33': Deferribacter desulfuricans SSM1 |
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'34': Dehalococcoides mccartyi CBDB1 |
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'35': Deinococcus radiodurans R1 ASM856v1 |
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'36': Desulfovibrio magneticus RS-1 |
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'37': Enterococcus faecalis V583 ASM778v1 |
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'38': Escherichia coli O157:H7 str. Sakai Sakai substr. RIMD 0509952 |
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'39': Finegoldia magna ATCC 29328 |
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'40': Francisella tularensis subsp. holarctica LVS ASM924v1 |
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'41': Fusobacterium nucleatum subsp. nucleatum ATCC 25586 |
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'42': Gemmatimonas aurantiaca T-27 |
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'43': Geobacter sulfurreducens PCA |
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'44': Haemophilus ducreyi 35000HP |
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'45': Haloquadratum walsbyi DSM 16790 DSM 16790 = HBSQ001 |
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'46': Helicobacter acinonychis str. Sheeba |
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'47': Helicobacter hepaticus ATCC 51449 |
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'48': Helicobacter pylori 26695 ASM852v1 |
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'49': Hydrogenobacter thermophilus TK-6 ASM1078v1 |
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'50': Idiomarina loihiensis L2TR |
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'51': Kocuria rhizophila DC2201 |
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'52': Lactobacillus fermentum IFO 3956 |
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'53': Lactobacillus salivarius UCC118 |
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'54': Lactococcus lactis subsp. lactis Il1403 IL1403 |
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'55': Macrococcus caseolyticus JCSC5402 |
|
'56': Magnetospirillum magneticum AMB-1 |
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'57': Mannheimia succiniciproducens MBEL55E |
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'58': Methanocella paludicola SANAE |
|
'59': Methanococcus voltae A3 |
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'60': Methanopyrus kandleri AV19 |
|
'61': Methanosarcina acetivorans C2A |
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'62': Methanothermobacter thermautotrophicus str. Delta H |
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'63': Methylococcus capsulatus str. Bath |
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'64': Microcystis aeruginosa NIES-843 |
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'65': Mycobacterium avium subsp. paratuberculosis K-10 |
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'66': Neisseria gonorrhoeae FA 1090 |
|
'67': Neisseria meningitidis MC58 |
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'68': Nitratiruptor sp. SB155-2 ASM1032v1 |
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'69': Nitrosomonas europaea ATCC 19718 |
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'70': Nostoc sp. PCC 7120 ASM970v1 |
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'71': Onion yellows phytoplasma OY-M onion yellows |
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'72': Orientia tsutsugamushi str. Ikeda |
|
'73': Pelotomaculum thermopropionicum SI |
|
'74': Picrophilus torridus DSM 9790 |
|
'75': Porphyromonas gingivalis ATCC 33277 |
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'76': Prochlorococcus marinus subsp. marinus str. CCMP1375 |
|
'77': Propionibacterium acnes KPA171202 |
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'78': Pseudomonas putida KT2440 |
|
'79': Pyrobaculum aerophilum str. IM2 |
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'80': Pyrococcus furiosus DSM 3638 |
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'81': Ralstonia solanacearum GMI1000 |
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'82': Rickettsia conorii str. Malish 7 |
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'83': Rickettsia typhi str. Wilmington |
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'84': Rothia mucilaginosa DY-18 |
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'85': Shigella flexneri 2a str. 301 |
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'86': Sinorhizobium meliloti 1021 |
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'87': Sodalis glossinidius str. 'morsitans' morsitans |
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'88': Staphylococcus epidermidis ATCC 12228 ASM764v1 |
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'89': Staphylococcus haemolyticus JCSC1435 |
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'90': Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 ASM1012v1 |
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'91': Streptococcus agalactiae 2603V/R |
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'92': Streptococcus mutans UA159 |
|
'93': Streptococcus pyogenes M1 GAS SF370 |
|
'94': Streptococcus uberis 0140J |
|
'95': Streptomyces avermitilis MA-4680 = NBRC 14893 MA-4680 ASM976v2 |
|
'96': Streptomyces griseus subsp. griseus NBRC 13350 |
|
'97': Sulfolobus solfataricus P2 |
|
'98': Sulfurovum sp. NBC37-1 ASM1034v1 |
|
'99': Symbiobacterium thermophilum IAM 14863 IAM14863 |
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'100': Synechococcus elongatus PCC 6301 |
|
'101': Synechocystis sp. PCC 6803 ASM972v1 |
|
'102': Thermococcus kodakarensis KOD1 |
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'103': Thermotoga maritima MSB8 ASM854v1 |
|
'104': Treponema denticola ATCC 35405 |
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'105': Treponema pallidum subsp. pallidum str. Nichols ASM860v1 |
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'106': Tropheryma whipplei str. Twist |
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'107': Vibrio cholerae O1 biovar El Tor str. N16961 |
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'108': Vibrio vulnificus YJ016 |
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'109': Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis |
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'110': Wolbachia endosymbiont of Drosophila melanogaster wMel |
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'111': Wolbachia endosymbiont strain TRS of Brugia malayi |
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'112': Xanthomonas campestris pv. campestris str. ATCC 33913 |
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'113': Xanthomonas oryzae pv. oryzae KACC 10331 |
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'114': Xylella fastidiosa 9a5c |
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'115': Yersinia enterocolitica subsp. enterocolitica 8081 |
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'116': Yersinia pestis CO92 ASM906v1 |
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'117': Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 ZM4 |
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'118': '[Bacillus thuringiensis] serovar konkukian str. 97-27' |
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'119': '[Pseudomonas syringae] pv. tomato str. DC3000' |
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'120': homo sapiens |
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splits: |
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- name: train |
|
num_bytes: 683959051 |
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num_examples: 1000000 |
|
download_size: 143743824 |
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dataset_size: 683959051 |
|
configs: |
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- config_name: default |
|
data_files: |
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- split: train |
|
path: data/train-* |
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--- |
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# Dataset Card for "autotrain-data-species_classify" |
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[More Information needed](https://github.com/huggingface/datasets/blob/main/CONTRIBUTING.md#how-to-contribute-to-the-dataset-cards) |