|
--- |
|
license: lgpl-3.0 |
|
language: |
|
- en |
|
metrics: |
|
- mae |
|
- mse |
|
- accuracy |
|
tags: |
|
- biology |
|
- plant |
|
- vitis |
|
- downey mildew |
|
- Plasmopara viticola |
|
- OIV 452-1 |
|
base_model: microsoft/swin-tiny-patch4-window7-224 |
|
--- |
|
# OIV Leaf Disc Phenotyping |
|
|
|
Companion repository for the article |
|
"Phenotyping grapevine resistance to downy mildew: deep learning as a promising tool to assess sporulation and necrosis" found [Here](https://link.springer.com/article/10.1186/s13007-024-01220-4?utm_source=rct_congratemailt&utm_medium=email&utm_campaign=oa_20240613&utm_content=10.1186/s13007-024-01220-4) |
|
|
|
## Folder Structure |
|
|
|
### checkpoints |
|
Contains checkpoint files for leaf disc detector and OIV 452-1 scorer. |
|
|
|
### data |
|
Contains all datasets data in CSV format |
|
|
|
### images |
|
Contains all images in three different folders: |
|
- leaf_discs contains full leaf discs |
|
- leaf_patches contains extracted patches |
|
- plates contains full plate images |
|
|
|
### src |
|
Contains source code under two formats: |
|
- *.py files contain base functionality and classes |
|
- *.ipynb files contain code to reproduce the article data |
|
|
|
## Notebooks |
|
|
|
![image/png](https://cdn-uploads.huggingface.co/production/uploads/64ec50e26a38b6958677f2a5/24Vagy7kIX5Yx_jGQkLYL.png) |
|
|
|
### repo_manager.ipynb |
|
Utility notebook to create this repository |