Update Dockerfile create db before inserting
83c1682
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Nicky Nicolson
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Commit History
Update Dockerfile use sqlite-utils instead of csvs-to-sqlite
72d9693
unverified
Nicky Nicolson
commited on
Update requirements.txt upg pandas
21f26c1
unverified
Nicky Nicolson
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Create push_to_huggingface.yml
75aa8b2
unverified
Nicky Nicolson
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Update Dockerfile
7ba1d6e
Specify 3.5 second SQL timeout when starting datasette
75992ae
Pass in working directory as arg to script
5aa6463
Nicky Nicolson
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Modifications to allow use of DWCA format download
7f36417
Nicky Nicolson
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Update README.md
561ae23
Update README.md
a82b811
Corrected spelling licence/license
a1cff5c
Nicky Nicolson
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Added licence name
4d96b32
Nicky Nicolson
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Fixed used of working dir when creating metadata json file
691c525
Nicky Nicolson
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Correct script filename
2fa3172
Nicky Nicolson
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Copy getDownloadMetadata.py to working dir
5717fee
Nicky Nicolson
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Get download metadata from GBIF, write doi/licence to datasette metadata
16e5414
Nicky Nicolson
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Removed unused sections
c3dab06
Nicky Nicolson
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Made GBIF download ID a space variable
e4bd801
Nicky Nicolson
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Use GBIF dowbload of all Solanum preserved specimens
01ef10a
Nicky Nicolson
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Add jellyfish plugin
e675b11
Nicky Nicolson
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Add clustermap
9bf9adb
Nicky Nicolson
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Modified name parsing to use bionomia directly
2cc6a74
Nicky Nicolson
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fix enable fts command
4d53d1c
Nicky Nicolson
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Configure full text search
041b20c
Nicky Nicolson
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Correct outputfile name
e0a2eea
Nicky Nicolson
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Mod type spec for limit arg
90c51f5
Nicky Nicolson
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Add limit arg and test install ruby gem for name parsing
cbab2c9
Nicky Nicolson
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switch to smaller datafile
6e64108
Nicky Nicolson
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add missing method def
7875bd2
Nicky Nicolson
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mod argument specification
bc6bc45
Nicky Nicolson
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MOved create cols into format conv script
424fd94
Nicky Nicolson
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Copy script to working dir
0c0ffb8
Nicky Nicolson
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Add step to extract collector name & create col for reconciliation
948faf7
Nicky Nicolson
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Extract GBIF download ID to variable
7a26d32
Nicky Nicolson
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fix outputfile (read from args)
80bafd5
Nicky Nicolson
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skip bad lines
e57384a
Nicky Nicolson
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Mod filename and generated DB table name
6d85436
Nicky Nicolson
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Move script to workdir
2c1d107
Nicky Nicolson
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conv tsv to csv before using sqllite utils
abf8c49
Nicky Nicolson
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Trying to escape tab char
f2146ad
Nicky Nicolson
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Implement GBIF specimen reconciliation
707e4f7
Nicky Nicolson
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Specify tab delimiter
2ab0b63
Nicky Nicolson
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Updated GBIF occurrence filename
18847ff
Nicky Nicolson
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mod paths
afd2a60
Nicky Nicolson
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Add ls
f3faa54
Nicky Nicolson
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Bump pandas version
24bddd4
Nicky Nicolson
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Add GBIF specimens
16660e8
Nicky Nicolson
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Mod google drive link for downloading
65e9f20
Nicky Nicolson
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Read DB from google drive, add reconciliation
7cc6ee0
Nicky Nicolson
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Add sqllite-utils
054a467
Nicky Nicolson
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