Commit History

Added Maturity level badge
9e3ebaa

ribesstefano commited on

Added ablation study and performance plots
c8d51e3

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Added ablation study with randomly sampled vectors + Started working on LightningDataModule wrapper
4e1d3f6

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Added convincing results (really, before it was a fast_dev_run)
48aea13

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Added convincing results
b7582e0

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Added softmax in model + Fixed and updated some hparams + Fixed bug in tanimoto distance (it was treated as similarity)
bda3015

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Added FP search + Added train metrics to logs
fda7af7

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Added LR scheduler + set default sum of embeddings
62ccb16

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Added majority voting evaluation
b86d3ec

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Improved plotting code
74a86c6

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Pushing current results
9692a92

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Working loading and predicting with pretrained model + Added scaling in "pure" pytorch during forwarding
15216c3

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Improved logging + current optuna studies
0171744

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Added model tests + checkpointing of the scaler object
de956c8

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Refactored experiments + fixed bug in dataset when applying scaling to val and test sets
6a5a99e

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Updated protac dataset to handle missing values in embedding dictionaries
4d17fea

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refactored package code and fine running experimental code
165d38a

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added rdkit to setup
74be897

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started testing package code
ea572f9

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Started working on packaging the repository
5e01175

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Updated 10% test with fixed Tanimoto-based split
6101de8

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Updated reports with ablation studies w/out E3
b496192

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Started working on optuna-based sklearn models training
f9a730b

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Added notebook on predicting degradation with sklearn models
f258949

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Added IaP to IAP conversion in data curation
e7f9851

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Added save and restore of Optuna studies
dafeec2

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Fixed verbose on earlystopping and added results
8cfcefe

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Finalized predictor script
ab45a22

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Added scaling to the dataset and concatenation at the beginning of the model
acd572a

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Added CV hparam train with 512bit fingerprints
00f11cc

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Added CV hparam training with dropout included
4154723

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Updated CV hparam training report with remaining ablation studies
ecae250

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Uploading CV hparam training and ablation study results
03abf18

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Polished hparam code and added ablation studies
91692a4

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Added report for CV-hparam "Active - AND"
022416b

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Added "Active-OR" report and modified report name
0c6f1b3

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Added chirality to Morgan FP and improved logging
d6ec1f3

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Polished scripted version of Hparam-CV training
d36ec1d

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Added report on Hparam-CV for "Active - OR"
87b14e7

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Added SMOTE k neighbors to hparam search
7e4c438

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Added script file for hparam CV training
b09510c

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Introduced CV and ORed activity definition
5c27a23

ribesstefano commited on