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tabula_sapiens_Tongue

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Tongue
Model card Files Community
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@@ -32,57 +32,57 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | basal cell | 1636 | 0.87 | 0.88 | 0.92 | 0.91 | 0.00 | 0.85 | 0.87 | 0.89 | 0.91 |
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- | stratified squamous epithelial cell | 1177 | 0.84 | 0.89 | 0.91 | 0.89 | 0.00 | 0.84 | 0.84 | 0.86 | 0.89 |
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- | CD4-positive, alpha-beta T cell | 150 | 0.69 | 0.70 | 0.72 | 0.63 | 0.00 | 0.68 | 0.68 | 0.70 | 0.75 |
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- | fibroblast | 173 | 0.97 | 0.96 | 0.97 | 0.96 | 0.00 | 0.96 | 0.97 | 0.95 | 0.97 |
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- | B cell | 120 | 0.97 | 0.96 | 0.97 | 0.86 | 0.00 | 0.95 | 0.97 | 0.96 | 0.97 |
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- | endothelial cell | 133 | 0.99 | 0.99 | 0.98 | 0.97 | 0.00 | 0.98 | 0.98 | 0.97 | 0.98 |
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- | CD8-positive, alpha-beta T cell | 124 | 0.76 | 0.75 | 0.77 | 0.63 | 0.00 | 0.77 | 0.73 | 0.77 | 0.80 |
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- | salivary gland cell | 93 | 0.87 | 0.04 | 0.91 | 0.86 | 0.00 | 0.81 | 0.86 | 0.84 | 0.88 |
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- | mural cell | 67 | 0.95 | 0.93 | 0.95 | 0.92 | 0.00 | 0.94 | 0.94 | 0.91 | 0.95 |
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- | macrophage | 54 | 0.74 | 0.79 | 0.78 | 0.78 | 0.00 | 0.79 | 0.81 | 0.77 | 0.79 |
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- | myoepithelial cell | 31 | 0.86 | 0.00 | 0.83 | 0.85 | 0.00 | 0.67 | 0.87 | 0.86 | 0.90 |
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- | tongue muscle cell | 12 | 0.83 | 0.83 | 0.82 | 0.81 | 0.00 | 0.73 | 0.85 | 0.74 | 0.77 |
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- | T cell | 20 | 0.29 | 0.00 | 0.31 | 0.08 | 0.00 | 0.35 | 0.25 | 0.32 | 0.32 |
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- | neutrophil | 16 | 0.84 | 0.97 | 0.97 | 0.90 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | monocyte | 12 | 0.46 | 0.56 | 0.44 | 0.33 | 0.00 | 0.50 | 0.45 | 0.52 | 0.48 |
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- | plasma cell | 8 | 0.86 | 0.55 | 0.93 | 0.27 | 0.00 | 0.70 | 1.00 | 0.75 | 1.00 |
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- | endothelial cell of lymphatic vessel | 10 | 0.84 | 0.89 | 0.82 | 0.56 | 0.00 | 0.82 | 0.80 | 0.67 | 0.80 |
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- | regulatory T cell | 10 | 0.38 | 0.00 | 0.63 | 0.00 | 0.00 | 0.53 | 0.47 | 0.73 | 0.56 |
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- | mast cell | 10 | 0.87 | 0.82 | 0.82 | 0.90 | 0.00 | 0.83 | 0.91 | 0.86 | 0.87 |
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- | Schwann cell | 5 | 0.77 | 0.67 | 0.80 | 0.60 | 0.00 | 0.73 | 0.60 | 0.44 | 0.73 |
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- | taste receptor cell | 2 | 0.67 | 0.67 | 1.00 | 0.67 | 0.00 | 0.29 | 1.00 | 0.50 | 1.00 |
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- | myeloid dendritic cell | 4 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.00 |
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  | natural killer cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  The train accuracies are computed on the training data.
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61
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | basal cell | 14627 | 0.87 | 0.89 | 0.96 | 0.94 | 0.00 | 0.87 | 0.89 | 0.90 | 0.93 |
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- | stratified squamous epithelial cell | 11138 | 0.85 | 0.89 | 0.95 | 0.93 | 0.00 | 0.86 | 0.87 | 0.89 | 0.91 |
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- | CD4-positive, alpha-beta T cell | 1437 | 0.76 | 0.71 | 0.84 | 0.76 | 0.00 | 0.80 | 0.83 | 0.86 | 0.87 |
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- | fibroblast | 1358 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |
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- | B cell | 1130 | 0.99 | 0.92 | 0.99 | 0.92 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
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- | endothelial cell | 1088 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |
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- | CD8-positive, alpha-beta T cell | 983 | 0.77 | 0.73 | 0.83 | 0.72 | 0.00 | 0.83 | 0.85 | 0.88 | 0.85 |
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- | salivary gland cell | 755 | 0.88 | 0.08 | 0.93 | 0.90 | 0.00 | 0.81 | 0.92 | 0.90 | 0.93 |
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- | mural cell | 551 | 0.92 | 0.91 | 0.95 | 0.94 | 0.00 | 0.95 | 0.96 | 0.96 | 0.95 |
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- | macrophage | 516 | 0.80 | 0.84 | 0.90 | 0.88 | 0.00 | 0.92 | 0.95 | 0.94 | 0.94 |
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- | myoepithelial cell | 239 | 0.81 | 0.00 | 0.92 | 0.88 | 0.00 | 0.63 | 0.90 | 0.90 | 0.92 |
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- | tongue muscle cell | 190 | 0.86 | 0.82 | 0.90 | 0.83 | 0.00 | 0.90 | 0.96 | 0.96 | 0.94 |
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- | T cell | 174 | 0.48 | 0.00 | 0.53 | 0.33 | 0.00 | 0.66 | 0.72 | 0.79 | 0.79 |
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- | neutrophil | 138 | 0.86 | 0.96 | 0.99 | 0.94 | 0.00 | 0.94 | 0.98 | 0.99 | 0.97 |
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- | monocyte | 127 | 0.57 | 0.52 | 0.74 | 0.73 | 0.00 | 0.69 | 0.89 | 0.93 | 0.89 |
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- | plasma cell | 107 | 0.94 | 0.84 | 0.99 | 0.58 | 0.00 | 0.84 | 1.00 | 0.98 | 1.00 |
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- | endothelial cell of lymphatic vessel | 87 | 0.93 | 0.95 | 0.97 | 0.86 | 0.00 | 0.93 | 0.97 | 0.95 | 0.97 |
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- | regulatory T cell | 82 | 0.52 | 0.00 | 0.72 | 0.16 | 0.00 | 0.72 | 0.89 | 0.91 | 0.87 |
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- | mast cell | 66 | 0.97 | 1.00 | 0.98 | 0.89 | 0.00 | 0.95 | 0.99 | 0.96 | 0.99 |
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- | Schwann cell | 30 | 0.55 | 0.53 | 0.76 | 0.61 | 0.00 | 0.84 | 0.98 | 0.97 | 0.87 |
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- | taste receptor cell | 30 | 0.82 | 0.50 | 0.89 | 0.72 | 0.00 | 0.38 | 0.98 | 0.72 | 0.95 |
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- | myeloid dendritic cell | 18 | 0.00 | 0.00 | 0.29 | 0.00 | 0.00 | 0.68 | 1.00 | 1.00 | 0.62 |
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- | natural killer cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 0.60 |
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  </details>
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | basal cell | 1640 | 0.86 | 0.90 | 0.93 | 0.91 | 0.00 | 0.87 | 0.87 | 0.88 | 0.91 |
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+ | stratified squamous epithelial cell | 1174 | 0.83 | 0.89 | 0.91 | 0.89 | 0.00 | 0.84 | 0.84 | 0.86 | 0.89 |
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+ | CD4-positive, alpha-beta T cell | 153 | 0.69 | 0.73 | 0.71 | 0.64 | 0.00 | 0.59 | 0.65 | 0.73 | 0.74 |
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+ | fibroblast | 179 | 0.97 | 0.96 | 0.97 | 0.96 | 0.00 | 0.96 | 0.96 | 0.95 | 0.97 |
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+ | B cell | 120 | 0.97 | 0.96 | 0.96 | 0.89 | 0.00 | 0.94 | 0.97 | 0.97 | 0.97 |
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+ | endothelial cell | 131 | 0.99 | 0.98 | 0.99 | 0.97 | 0.00 | 0.98 | 0.98 | 0.97 | 0.98 |
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+ | CD8-positive, alpha-beta T cell | 125 | 0.75 | 0.77 | 0.74 | 0.61 | 0.00 | 0.70 | 0.70 | 0.79 | 0.78 |
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+ | salivary gland cell | 84 | 0.87 | 0.13 | 0.88 | 0.84 | 0.00 | 0.67 | 0.86 | 0.85 | 0.86 |
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+ | mural cell | 66 | 0.95 | 0.93 | 0.97 | 0.93 | 0.00 | 0.95 | 0.95 | 0.94 | 0.95 |
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+ | macrophage | 54 | 0.75 | 0.82 | 0.79 | 0.81 | 0.00 | 0.80 | 0.78 | 0.76 | 0.80 |
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+ | myoepithelial cell | 30 | 0.87 | 0.00 | 0.92 | 0.88 | 0.00 | 0.77 | 0.88 | 0.86 | 0.87 |
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+ | tongue muscle cell | 15 | 0.90 | 0.90 | 0.90 | 0.84 | 0.00 | 0.76 | 0.90 | 0.84 | 0.87 |
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+ | T cell | 20 | 0.26 | 0.00 | 0.19 | 0.00 | 0.00 | 0.32 | 0.34 | 0.30 | 0.31 |
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+ | neutrophil | 16 | 1.00 | 1.00 | 0.97 | 0.94 | 0.00 | 0.97 | 1.00 | 0.97 | 1.00 |
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+ | monocyte | 12 | 0.57 | 0.62 | 0.46 | 0.40 | 0.00 | 0.55 | 0.48 | 0.54 | 0.59 |
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+ | plasma cell | 9 | 0.88 | 0.80 | 0.94 | 0.31 | 0.00 | 0.82 | 1.00 | 1.00 | 1.00 |
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+ | endothelial cell of lymphatic vessel | 8 | 0.80 | 0.86 | 0.86 | 0.71 | 0.00 | 0.71 | 0.78 | 0.71 | 0.75 |
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+ | regulatory T cell | 10 | 0.42 | 0.46 | 0.67 | 0.00 | 0.00 | 0.43 | 0.52 | 0.82 | 0.59 |
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+ | mast cell | 10 | 0.87 | 0.82 | 0.90 | 0.80 | 0.00 | 0.87 | 0.87 | 0.86 | 0.87 |
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+ | Schwann cell | 5 | 0.62 | 0.67 | 0.80 | 0.55 | 0.00 | 0.50 | 0.80 | 0.60 | 0.73 |
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+ | taste receptor cell | 2 | 0.67 | 0.67 | 1.00 | 0.67 | 0.00 | 0.33 | 0.67 | 0.00 | 0.67 |
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+ | myeloid dendritic cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 0.40 | 0.00 | 0.00 |
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  | natural killer cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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59
  The train accuracies are computed on the training data.
60
 
61
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | basal cell | 14623 | 0.87 | 0.89 | 0.96 | 0.94 | 0.00 | 0.88 | 0.89 | 0.89 | 0.92 |
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+ | stratified squamous epithelial cell | 11141 | 0.85 | 0.90 | 0.95 | 0.93 | 0.00 | 0.86 | 0.87 | 0.88 | 0.91 |
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+ | CD4-positive, alpha-beta T cell | 1434 | 0.74 | 0.71 | 0.84 | 0.77 | 0.00 | 0.77 | 0.82 | 0.85 | 0.87 |
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+ | fibroblast | 1352 | 0.98 | 0.97 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |
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+ | B cell | 1130 | 0.98 | 0.94 | 0.99 | 0.94 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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+ | endothelial cell | 1090 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.98 |
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+ | CD8-positive, alpha-beta T cell | 982 | 0.77 | 0.74 | 0.83 | 0.70 | 0.00 | 0.82 | 0.84 | 0.88 | 0.86 |
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+ | salivary gland cell | 764 | 0.89 | 0.08 | 0.94 | 0.90 | 0.00 | 0.71 | 0.91 | 0.91 | 0.93 |
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+ | mural cell | 552 | 0.92 | 0.91 | 0.95 | 0.93 | 0.00 | 0.95 | 0.96 | 0.97 | 0.95 |
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+ | macrophage | 516 | 0.79 | 0.85 | 0.91 | 0.87 | 0.00 | 0.90 | 0.94 | 0.93 | 0.93 |
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+ | myoepithelial cell | 240 | 0.82 | 0.00 | 0.91 | 0.88 | 0.00 | 0.75 | 0.89 | 0.88 | 0.91 |
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+ | tongue muscle cell | 187 | 0.85 | 0.83 | 0.90 | 0.84 | 0.00 | 0.84 | 0.98 | 0.98 | 0.95 |
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+ | T cell | 174 | 0.47 | 0.00 | 0.54 | 0.28 | 0.00 | 0.66 | 0.77 | 0.79 | 0.83 |
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+ | neutrophil | 138 | 0.93 | 0.97 | 0.99 | 0.96 | 0.00 | 0.90 | 0.98 | 0.99 | 0.98 |
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+ | monocyte | 127 | 0.58 | 0.54 | 0.75 | 0.71 | 0.00 | 0.75 | 0.90 | 0.95 | 0.92 |
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+ | plasma cell | 106 | 0.93 | 0.86 | 0.99 | 0.64 | 0.00 | 0.89 | 1.00 | 0.98 | 1.00 |
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+ | endothelial cell of lymphatic vessel | 89 | 0.94 | 0.95 | 0.97 | 0.91 | 0.00 | 0.89 | 0.97 | 0.97 | 0.96 |
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+ | regulatory T cell | 82 | 0.55 | 0.02 | 0.69 | 0.11 | 0.00 | 0.71 | 0.88 | 0.88 | 0.88 |
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+ | mast cell | 66 | 0.97 | 0.99 | 0.99 | 0.88 | 0.00 | 0.96 | 0.98 | 0.94 | 0.98 |
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+ | Schwann cell | 30 | 0.57 | 0.55 | 0.72 | 0.74 | 0.00 | 0.75 | 1.00 | 0.98 | 0.87 |
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+ | taste receptor cell | 30 | 0.82 | 0.29 | 0.89 | 0.72 | 0.00 | 0.40 | 0.97 | 0.58 | 0.95 |
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+ | myeloid dendritic cell | 18 | 0.00 | 0.00 | 0.20 | 0.00 | 0.00 | 0.73 | 1.00 | 0.97 | 0.71 |
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+ | natural killer cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.59 | 0.93 | 0.93 | 0.60 |
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  </details>
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