docker/Dockerfile_conda

FROM continuumio/miniconda3

# Install necessary packages
ARG DEBIAN_FRONTEND=noninteractive
RUN apt-get update && \
    apt-get install -y --no-install-recommends \
    ca-certificates \
    software-properties-common \
    git \
    git-lfs \
    curl \
    build-essential \
    unzip \
    tmux \
    htop \
    nano \
    vim \
    less \
    pipx \
    libreadline-dev \
    libncursesw5-dev \
    libssl-dev \
    libsqlite3-dev \
    libgdbm-dev \
    libc6-dev \
    libbz2-dev \
    libffi-dev \
    libpq-dev \
    liblzma-dev \
    libopenblas-dev \
    libgl1-mesa-dev \
    libglib2.0-0 \
    libsm6 \
    libxext6 \
    ffmpeg \
    tk-dev \
    direnv \
    ansible \
    jq \
    ninja-build && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

# Create /root/.ssh directory
RUN mkdir -p /root/.ssh

RUN conda config --set auto_activate_base false

RUN pipx ensurepath && \
    pipx install poetry

# Install pyenv
RUN curl https://pyenv.run | bash
RUN echo 'export PYENV_ROOT="$HOME/.pyenv"' >> ~/.bashrc
RUN echo 'export PATH="$PYENV_ROOT/bin:$PATH"' >> ~/.bashrc
RUN echo 'eval "$(pyenv init --path)"' >> ~/.bashrc

RUN pip install --upgrade pip
RUN pip install --no-cache-dir poetry ansible keyring yq sagecipher awscli pyasyncore 

# Add ssh-ccdb function to .bashrc to connect to CCDB servers (cedar, beluga, narval)
RUN echo 'ssh-ccdb() {\n    local server\n    case $1 in\n        cedar)\n            server="cedar.alliancecan.ca"\n            ;;\n        beluga)\n            server="beluga.alliancecan.ca"\n            ;;\n        narval)\n            server="narval.alliancecan.ca"\n            ;;\n        *)\n            echo "Usage: ssh-ccdb {cedar|beluga|narval}"\n            return 1\n            ;;\n    esac\n    ssh mka267@$server\n}' >> ~/.bashrc

# Enable color support for ls and grep in .bashrc
RUN echo 'if [ -x /usr/bin/dircolors ]; then\n    eval "$(dircolors -b)"\n    alias ls="ls --color=auto"\n    alias grep="grep --color=auto"\n    alias fgrep="fgrep --color=auto"\n    alias egrep="egrep --color=auto"\nfi' >> ~/.bashrc

# Add custom colored prompt to .bashrc
RUN echo 'PS1="\\[\\e[0;32m\\]\\u@\\h\\[\\e[m\\]:\\[\\e[0;34m\\]\\w\\[\\e[m\\]\\$ "' >> ~/.bashrc

# Enable colored output for less in .bashrc
RUN echo 'export LESS=" -R"' >> ~/.bashrc

# Enable git prompt support if available
# RUN echo 'if [ -f /usr/share/git/completion/git-prompt.sh ]; then\n    . /usr/share/git/completion/git-prompt.sh\n    PS1="\\[\\e[32m\\]\\u@\\h \\[\\e[33m\\]\\W$(__git_ps1 \" (%s)\")\\[\\e[0m\\]]\\$ "\nfi' >> ~/.bashrc

# Enable color in the prompt for bash >= 4.0
RUN echo 'force_color_prompt=yes\nif [ -n "$force_color_prompt" ]; then\n    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then\n        color_prompt=yes\n    else\n        color_prompt=\n    fi\nfi\n\nif [ "$color_prompt" = yes ]; then\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\[\\033[01;32m\\]\\u@\\h\\[\\033[00m\\]:\\[\\033[01;34m\\]\\w\\[\\033[00m\\]\\$ "\nelse\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\u@\\h:\\w\\$ "\nfi\nunset color_prompt force_color_prompt' >> ~/.bashrc

# Install VSCode CLI
RUN curl -sL "https://code.visualstudio.com/sha/download?build=stable&os=cli-alpine-x64" \
        --output /tmp/vscode-cli.tar.gz && \
    tar -xf /tmp/vscode-cli.tar.gz -C /usr/bin && \
    rm /tmp/vscode-cli.tar.gz

RUN git config --global user.email "[email protected]" && \
    git config --global user.name "Masoud KA"

# CMD ["code", "tunnel"]