Initial Commit

apptainer_def_files/miniconda.def

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+Bootstrap: docker
+From: continuumio/miniconda3
+
+%environment
+  export DEBIAN_FRONTEND=noninteractive
+
+%post
+  apt-get update && \
+  apt-get install -y --no-install-recommends \
+      ca-certificates \
+      build-essential \
+      git \
+      curl \
+      tmux \
+      htop \
+      nano \
+      vim \
+      pipx \
+      libreadline-dev \
+      libncursesw5-dev \
+      libssl-dev \
+      libsqlite3-dev \
+      libgdbm-dev \
+      libc6-dev \
+      libbz2-dev \
+      libffi-dev \
+      libpq-dev \
+      liblzma-dev \
+      libopenblas-dev \
+      libgl1-mesa-dev \
+      libglib2.0-0 \
+      libsm6 \
+      libxext6 \
+      ffmpeg \
+      tk-dev \
+      ninja-build && \
+  apt-get clean && \
+  rm -rf /var/lib/apt/lists/*
+
+  # run conda init and source bashrc
+  conda init bash
+
+  . /root/.bashrc
+  
+  # Create a directory for project files
+  mkdir -p /project
+
+%runscript
+  # Run the command using the script
+  exec "$@"

apptainer_def_files/py310_novenv.def

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+Bootstrap: docker
+#From: python:latest
+#From: python:3.11-slim
+From: python:3.10
+
+%post
+  # Create the app directory in /home within the container's filesystem
+  mkdir -p app
+
+  # Upgrade pip
+  pip install --no-cache-dir --upgrade pip
+
+  # Install dependencies
+  echo "Installing Python dependencies..."
+  pip install --no-cache-dir torch torchvision torchaudio lightning tensorboard pycocotools matplotlib
+
+%runscript
+  # Run the given command
+  exec "$@"

apptainer_def_files/py310_torch.def

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+Bootstrap: docker
+From: python:3.10
+
+%post
+  # Create the app directory at the top level of the container's filesystem
+  mkdir -p /app
+
+  # Navigate to the app directory
+  cd /app
+
+  # Create a virtual environment
+  python -m venv myenv
+
+  # Activate the virtual environment
+  . /app/myenv/bin/activate
+
+  # Upgrade pip
+  pip install --no-cache-dir --upgrade pip
+
+  # Install dependencies
+  echo "Installing Python dependencies..."
+  pip install --no-cache-dir torch==2.2.2 torchvision==0.17.2 torchaudio==2.2.2 --index-url https://download.pytorch.org/whl/cu121 lightning=2.2.4 tensorboard pycocotools matplotlib mlflow
+  #pip install --no-cache-dir torch torchvision torchaudio lightning=2.2.4 tensorboard pycocotools matplotlib mlflow
+
+%environment
+  # Set the environment variable to activate the virtual environment by default
+  . /app/myenv/bin/activate
+
+%runscript
+  # Activate the virtual environment
+  . /app/myenv/bin/activate
+  
+  # Run the given command
+  exec "$@"

apptainer_def_files/py311_almalinux.def

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+Bootstrap: docker
+From: almalinux:9
+
+%post
+  # Create the app directory at the top level of the container's filesystem
+  mkdir -p /app && \
+
+  # Install EPEL repository and update the system
+  dnf update -y && \
+  dnf install -y epel-release && \
+  dnf update -y && \
+  /usr/bin/crb enable && \
+  dnf groupinstall -y "Development Tools" && \
+
+  # Install additional dependencies
+  dnf install -y --allowerasing \
+      ca-certificates \
+      git \
+      curl \
+      wget \
+      tmux \
+      htop \
+      nano \
+      vim \
+      gcc \
+      gcc-c++ \
+      cmake \
+      make \
+      readline-devel \
+      ncurses-devel \
+      openssl-devel \
+      sqlite-devel \
+      gdbm-devel \
+      glibc \
+      glibc-devel \
+      gtk2-devel \
+      libffi-devel \
+      libpq-devel \
+      openblas-devel \
+      libpng-devel \
+      jasper-devel \
+      openexr-devel \
+      libwebp-devel \
+      libjpeg-turbo-devel \
+      libtiff-devel \
+      tbb-devel \
+      libv4l-devel \
+      eigen3-devel \
+      freeglut-devel \
+      mesa-libGL \
+      mesa-libGL-devel \
+      boost \
+      boost-thread \
+      boost-devel \
+      gstreamer1-plugins-base \
+      bzip2-devel \
+      libffi-devel \
+      libpq-devel \
+      xz-devel \
+      openblas-devel \
+      glib2 \
+      glib2-devel \
+      libdc1394-devel \
+      xine-lib-devel \
+      gstreamer1-plugins-base \
+      gstreamer1-devel \
+      qt5-qtbase-devel \
+      atlas-devel \
+      fdk-aac-free-devel \
+      lame-devel \
+      libtheora-devel \
+      libvorbis-devel \
+      xvidcore-devel \
+      opencore-amr-devel \
+      protobuf-devel \
+      protobuf-compiler \
+      libSM \
+      libXext \
+      tk-devel \
+      opencv \
+      opencv-devel \
+      ninja-build && \
+  dnf clean all && \
+  rm -rf /var/cache/dnf && \
+
+  # dnf install x264 x265 v4l-utils ffmpeg-devel
+  
+  # Install Python 3.11 from the EPEL repository
+  dnf install -y python3.11 python3.11-devel python3-pip && \
+  
+  # Create a symlink for python3 to point to python3.11
+  # alternatives --set python3 /usr/bin/python3.11 && \
+
+  # Create and activate virtual environment
+  python3.11 -m venv /app/virt_env && \
+  . /app/virt_env/bin/activate && \
+
+  # Upgrade pip
+  pip install --no-cache-dir --upgrade pip && \
+
+  # Install dependencies
+  echo "Installing Python dependencies..." && \
+  pip install --no-cache-dir torch==2.3.1 torchvision==0.18.1 torchaudio==2.3.1 --index-url https://download.pytorch.org/whl/cu121 && \
+  pip install --no-cache-dir cuda-python==12.1.0 lightning==2.3.3 mlflow==2.15.0 torchmetrics tensorboard pycocotools matplotlib opencv-python boto3 ipykernel psutil && \
+  pip install --no-cache-dir mmcv==2.2.0 -f https://download.openmmlab.com/mmcv/dist/cu121/torch2.3/index.html && \
+  pip install --no-cache-dir xformers==0.0.27 --index-url https://download.pytorch.org/whl/cu121
+
+%environment
+  # Set the environment variable to activate the virtual environment by default
+  . /app/virt_env/bin/activate
+
+%runscript
+  # Activate the virtual environment
+  . /app/virt_env/bin/activate && \
+  
+  # Run the given command
+  exec "$@"

apptainer_def_files/py311_conda.def

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+Bootstrap: docker
+From: continuumio/miniconda3
+
+%post
+  TMPDIR=$(mktemp -d) conda create -n myenv python=3.11 pytorch==2.2.2 torchvision==0.17.2 torchaudio==2.2.2 pytorch-cuda=12.1 lightning=2.2.4 pycocotools matplotlib tensorboard mlflow cuda-cudart cuda-version=12 -c pytorch -c nvidia -c conda-forge -y 
+  #conda create -n myenv python=3.10 numpy -c conda-forge -y
+
+  # Create a directory for environment scripts
+  mkdir -p /project/env
+
+# Create a script to initialize conda, activate the environment, and then run the command
+%environment
+  source activate myenv
+
+%runscript
+  # Run the command using the script
+  source activate myenv
+  exec "$@"

apptainer_def_files/py311_novenv.def

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+Bootstrap: docker
+#From: python:latest
+#From: python:3.11-slim
+From: python:3.11
+
+%post
+  # Create the app directory
+  mkdir -p /app
+
+  # Upgrade pip
+  pip install --upgrade pip
+
+  # Install dependencies
+  echo "Installing Python dependencies..."
+  pip install --no-cache-dir torch torchvision torchaudio lightning tensorboard pycocotools matplotlib mlflow
+
+%runscript
+  # Run the given command
+  exec "$@"

apptainer_def_files/py311_poetry.def

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+Bootstrap: docker
+From: python:3.11
+
+%environment
+    export DEBIAN_FRONTEND=noninteractive
+
+%post
+  apt-get update && \
+  apt-get install -y --no-install-recommends \
+      ca-certificates \
+      build-essential \
+      git \
+      curl \
+      wget \
+      tmux \
+      htop \
+      nano \
+      vim \
+      pipx \
+      libreadline-dev \
+      libncursesw5-dev \
+      libssl-dev \
+      libsqlite3-dev \
+      libgdbm-dev \
+      libc6-dev \
+      libbz2-dev \
+      libffi-dev \
+      libpq-dev \
+      liblzma-dev \
+      libopenblas-dev \
+      libgl1-mesa-dev \
+      libglib2.0-0 \
+      libsm6 \
+      libxext6 \
+      ffmpeg \
+      tk-dev \
+      ninja-build && \
+  apt-get clean && \
+  rm -rf /var/lib/apt/lists/*
+
+  #pipx ensurepath --global && \
+  #pipx install poetry
+
+
+  # Create the app directory at the top level of the container's filesystem
+  mkdir -p /app
+
+  # Navigate to the app directory
+  cd /app
+
+  # Create a virtual environment
+  python -m venv myenv
+
+  # Activate the virtual environment
+  . /app/myenv/bin/activate
+
+  # Upgrade pip
+  pip install --no-cache-dir --upgrade pip
+
+  pip install --no-cache-dir --upgrade poetry
+  poetry config virtualenvs.create false --local
+
+%environment
+  # Set the environment variable to activate the virtual environment by default
+  . /app/myenv/bin/activate
+  poetry config virtualenvs.create false --local
+
+%runscript
+  # Activate the virtual environment
+  . /app/myenv/bin/activate
+  poetry config virtualenvs.create false --local
+  
+  # Run the given command
+  exec "$@"

apptainer_def_files/py311_torch.def

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+Bootstrap: docker
+From: python:3.11
+
+%environment
+    export DEBIAN_FRONTEND=noninteractive
+
+%post
+  apt-get update && \
+  apt-get install -y --no-install-recommends \
+      ca-certificates \
+      build-essential \
+      git \
+      curl \
+      wget \
+      tmux \
+      htop \
+      nano \
+      vim \
+      pipx \
+      libreadline-dev \
+      libncursesw5-dev \
+      libssl-dev \
+      libsqlite3-dev \
+      libgdbm-dev \
+      libc6-dev \
+      libbz2-dev \
+      libffi-dev \
+      libpq-dev \
+      liblzma-dev \
+      libopenblas-dev \
+      libgl1-mesa-dev \
+      libglib2.0-0 \
+      libsm6 \
+      libxext6 \
+      ffmpeg \
+      tk-dev \
+      ninja-build && \
+  apt-get update && \
+  apt-get full-upgrade -y && \
+  apt-get clean && \
+  rm -rf /var/lib/apt/lists/*
+
+  # Create the app directory at the top level of the container's filesystem
+  mkdir -p /app
+
+  # Navigate to the app directory
+  cd /app
+
+  # Create a virtual environment
+  python -m venv myenv
+
+  # Activate the virtual environment
+  . /app/myenv/bin/activate
+
+  # Upgrade pip
+  pip install --no-cache-dir --upgrade pip
+
+  # Install dependencies
+  echo "Installing Python dependencies..."
+  pip install --no-cache-dir torch==2.3.1 torchvision==0.18.1 torchaudio==2.3.1 --index-url https://download.pytorch.org/whl/cu121
+  pip install --no-cache-dir lightning==2.3.3 tensorboard pycocotools matplotlib mlflow==2.14.3 cuda-python torchmetrics opencv-python-headless boto3 ipykernel
+  pip install mmcv==2.2.0 -f https://download.openmmlab.com/mmcv/dist/cu121/torch2.3/index.html
+
+%environment
+  # Set the environment variable to activate the virtual environment by default
+  . /app/myenv/bin/activate
+
+%runscript
+  # Activate the virtual environment
+  . /app/myenv/bin/activate
+  
+  # Run the given command
+  exec "$@"

apptainer_def_files/py311_torch_alpine.def

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+Bootstrap: docker
+From: alpine:latest
+
+%environment
+  export PATH="$PATH:/usr/local/bin"
+
+%post
+  mkdir /app
+
+  # Install Python and pip
+  apk add --update --no-cache python3
+
+  python3 -m venv /app/venv
+
+  # activate the virtual environment
+  . /app/venv/bin/activate
+
+  # Install dependencies
+  echo "Installing Python dependencies..."
+  # pip install numpy
+  pip install torch torchvision torchaudio lightning tensorboard pycocotools matplotlib
+
+%runscript
+  . /app/venv/bin/activate
+  # echo "This is the runscript"
+  exec "$@"

apptainer_def_files/py311_torch_minimal.def

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+Bootstrap: docker
+From: busybox:1.36.1-glibc
+
+%environment
+  export PATH="$PATH:/usr/local/bin"
+
+%post
+  mkdir -p /app
+  mkdir -p /usr/local/bin
+
+  # Download Python
+  wget https://www.python.org/ftp/python/3.11.1/Python-3.11.1.tgz -O /app/python.tgz
+  tar -xzf /app/python.tgz -C /app
+  cd /app/Python-3.11.1
+  ./configure --prefix=/usr/local
+  make
+  make install
+
+  # Install pip
+  wget https://bootstrap.pypa.io/get-pip.py -O /app/get-pip.py
+  python3 /app/get-pip.py
+
+  # Install dependencies
+  echo "Installing Python dependencies..."
+  python3 -m ensurepip --upgrade
+  python3 -m pip install numpy
+  # python3 -m pip install torch torchvision torchaudio lightning tensorboard pycocotools matplotlib
+
+%runscript
+  echo "This is the runscript"
+  exec "$@"

apptainer_def_files/py311_torch_mpi.def

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+Bootstrap: docker
+#From: python:latest
+From: python:3.11-slim
+
+%environment
+  # Point to OMPI binaries, libraries, man pages
+  export OMPI_DIR=/opt/ompi
+  export PATH="$OMPI_DIR/bin:$PATH"
+  export LD_LIBRARY_PATH="$OMPI_DIR/lib:$LD_LIBRARY_PATH"
+  export MANPATH="$OMPI_DIR/share/man:$MANPATH"
+
+%post
+  echo "Installing required packages..."
+  apt-get update && apt-get install -y wget git bash gcc gfortran g++ make file bzip2
+
+  echo "Installing Open MPI"
+  export OMPI_DIR=/opt/ompi
+  export OMPI_VERSION=4.1.5
+  export OMPI_URL="https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-$OMPI_VERSION.tar.bz2"
+  mkdir -p /tmp/ompi
+  mkdir -p /opt
+  # Download
+  cd /tmp/ompi && wget -O openmpi-$OMPI_VERSION.tar.bz2 $OMPI_URL && tar -xjf openmpi-$OMPI_VERSION.tar.bz2
+  # Compile and install
+  cd /tmp/ompi/openmpi-$OMPI_VERSION && ./configure --prefix=$OMPI_DIR && make -j$(nproc) install
+
+  # Set env variables so we can compile our application
+  export PATH=$OMPI_DIR/bin:$PATH
+  export LD_LIBRARY_PATH=$OMPI_DIR/lib:$LD_LIBRARY_PATH
+
+  # Clean up
+  apt-get clean
+  rm -rf /var/lib/apt/lists/*
+  rm -rf /tmp/*
+
+  # Set up the virtual environment
+  mkdir /app
+
+  python -m venv /app/venv
+
+  # activate the virtual environment
+  . /app/venv/bin/activate
+
+  # Install dependencies
+  echo "Installing Python dependencies..."
+  # pip install --no-cache-dir pycocotools
+  pip install --no-cache-dir torch torchvision torchaudio lightning tensorboard pycocotools matplotlib
+
+%runscript
+  . /app/venv/bin/activate
+  # echo "This is the runscript"
+  exec "$@"

apptainer_def_files/py311_torch_srun.def

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+Bootstrap: docker
+#From: python:latest
+From: python:3.11-slim
+
+%post
+  mkdir -p /opt
+  echo "Installing required packages..."
+  apt-get update && apt-get install -y libc6 libhdf5-103-1 libhdf5-hl-100 liblz4-1 libreadline8 slurm-wlm-basic-plugins munge
+
+  # Clean up
+  apt-get clean
+  #rm -rf /var/lib/apt/lists/*
+  #rm -rf /tmp/*
+
+  # Set up the virtual environment
+  mkdir /app
+
+  python -m venv /app/venv
+
+  # activate the virtual environment
+  . /app/venv/bin/activate
+
+  # Install dependencies
+  echo "Installing Python dependencies..."
+  # pip install --no-cache-dir pycocotools
+  pip install --no-cache-dir torch torchvision torchaudio lightning tensorboard pycocotools matplotlib
+
+%runscript
+  . /app/venv/bin/activate
+  # echo "This is the runscript"
+  exec "$@"

docker/Dockerfile

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+FROM python:3.11
+
+# Install necessary packages
+RUN apt-get update && \
+    DEBIAN_FRONTEND=noninteractive  apt-get install -y --no-install-recommends \
+    git \
+    curl \
+    build-essential \
+    pipx \
+    tmux \
+    htop \
+    nano \
+    vim \
+    ninja-build && \
+    apt-get clean && \
+    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+# Add ssh-ccdb function to .bashrc to connect to CCDB servers (cedar, beluga, narval)
+RUN echo 'ssh-ccdb() {\n    local server\n    case $1 in\n        cedar)\n            server="cedar.alliancecan.ca"\n            ;;\n        beluga)\n            server="beluga.alliancecan.ca"\n            ;;\n        narval)\n            server="narval.alliancecan.ca"\n            ;;\n        *)\n            echo "Usage: ssh-ccdb {cedar|beluga|narval}"\n            return 1\n            ;;\n    esac\n    ssh mka267@$server\n}' >> ~/.bashrc
+
+# Enable color support for ls and grep in .bashrc
+RUN echo 'if [ -x /usr/bin/dircolors ]; then\n    eval "$(dircolors -b)"\n    alias ls="ls --color=auto"\n    alias grep="grep --color=auto"\n    alias fgrep="fgrep --color=auto"\n    alias egrep="egrep --color=auto"\nfi' >> ~/.bashrc
+
+# Add custom colored prompt to .bashrc
+RUN echo 'PS1="\\[\\e[0;32m\\]\\u@\\h\\[\\e[m\\]:\\[\\e[0;34m\\]\\w\\[\\e[m\\]\\$ "' >> ~/.bashrc
+
+# Enable colored output for less in .bashrc
+RUN echo 'export LESS=" -R"' >> ~/.bashrc
+
+# Enable git prompt support if available
+#RUN echo 'if [ -f /usr/share/git/completion/git-prompt.sh ]; then\n    . /usr/share/git/completion/git-prompt.sh\n    PS1="\\[\\e[32m\\]\\u@\\h \\[\\e[33m\\]\\W$(__git_ps1 \" (%s)\")\\[\\e[0m\\]]\\$ "\nfi' >> ~/.bashrc
+
+# Enable color in the prompt for bash >= 4.0
+RUN echo 'force_color_prompt=yes\nif [ -n "$force_color_prompt" ]; then\n    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then\n        color_prompt=yes\n    else\n        color_prompt=\n    fi\nfi\n\nif [ "$color_prompt" = yes ]; then\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\[\\033[01;32m\\]\\u@\\h\\[\\033[00m\\]:\\[\\033[01;34m\\]\\w\\[\\033[00m\\]\\$ "\nelse\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\u@\\h:\\w\\$ "\nfi\nunset color_prompt force_color_prompt' >> ~/.bashrc
+
+# Install VSCode CLI
+RUN curl -sL "https://code.visualstudio.com/sha/download?build=stable&os=cli-alpine-x64" \
+        --output /tmp/vscode-cli.tar.gz && \
+    tar -xf /tmp/vscode-cli.tar.gz -C /usr/bin && \
+    rm /tmp/vscode-cli.tar.gz
+
+# Create a virtual environment and install PyTorch
+# RUN python -m venv /home/venv && \
+#     . /home/venv/bin/activate && \
+RUN pip install --upgrade pip && \
+    pip install --no-cache-dir torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cu121 && \
+    pip install --no-cache-dir lightning \
+                               tensorboard \
+                               pycocotools \
+                               matplotlib \
+                               mlflow \
+                               cuda-python \
+                               torchmetrics \
+                               ipykernel \
+                               opencv-python-headless
+
+RUN git config --global user.email "[email protected]" && \
+    git config --global user.name "Masoud KA"
+
+# Ensure the virtual environment is activated when the container starts
+# ENV VIRTUAL_ENV=/home/venv
+# ENV PATH="$VIRTUAL_ENV/bin:$PATH"
+
+# CMD ["code", "tunnel"]

docker/Dockerfile_conda

@@ -0,0 +1,88 @@
+FROM continuumio/miniconda3
+
+# Install necessary packages
+ARG DEBIAN_FRONTEND=noninteractive
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+    ca-certificates \
+    software-properties-common \
+    git \
+    git-lfs \
+    curl \
+    build-essential \
+    unzip \
+    tmux \
+    htop \
+    nano \
+    vim \
+    less \
+    pipx \
+    libreadline-dev \
+    libncursesw5-dev \
+    libssl-dev \
+    libsqlite3-dev \
+    libgdbm-dev \
+    libc6-dev \
+    libbz2-dev \
+    libffi-dev \
+    libpq-dev \
+    liblzma-dev \
+    libopenblas-dev \
+    libgl1-mesa-dev \
+    libglib2.0-0 \
+    libsm6 \
+    libxext6 \
+    ffmpeg \
+    tk-dev \
+    direnv \
+    ansible \
+    jq \
+    ninja-build && \
+    apt-get clean && \
+    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+# Create /root/.ssh directory
+RUN mkdir -p /root/.ssh
+
+RUN conda config --set auto_activate_base false
+
+RUN pipx ensurepath && \
+    pipx install poetry
+
+# Install pyenv
+RUN curl https://pyenv.run | bash
+RUN echo 'export PYENV_ROOT="$HOME/.pyenv"' >> ~/.bashrc
+RUN echo 'export PATH="$PYENV_ROOT/bin:$PATH"' >> ~/.bashrc
+RUN echo 'eval "$(pyenv init --path)"' >> ~/.bashrc
+
+RUN pip install --upgrade pip
+RUN pip install --no-cache-dir poetry ansible keyring yq sagecipher awscli pyasyncore 
+
+# Add ssh-ccdb function to .bashrc to connect to CCDB servers (cedar, beluga, narval)
+RUN echo 'ssh-ccdb() {\n    local server\n    case $1 in\n        cedar)\n            server="cedar.alliancecan.ca"\n            ;;\n        beluga)\n            server="beluga.alliancecan.ca"\n            ;;\n        narval)\n            server="narval.alliancecan.ca"\n            ;;\n        *)\n            echo "Usage: ssh-ccdb {cedar|beluga|narval}"\n            return 1\n            ;;\n    esac\n    ssh mka267@$server\n}' >> ~/.bashrc
+
+# Enable color support for ls and grep in .bashrc
+RUN echo 'if [ -x /usr/bin/dircolors ]; then\n    eval "$(dircolors -b)"\n    alias ls="ls --color=auto"\n    alias grep="grep --color=auto"\n    alias fgrep="fgrep --color=auto"\n    alias egrep="egrep --color=auto"\nfi' >> ~/.bashrc
+
+# Add custom colored prompt to .bashrc
+RUN echo 'PS1="\\[\\e[0;32m\\]\\u@\\h\\[\\e[m\\]:\\[\\e[0;34m\\]\\w\\[\\e[m\\]\\$ "' >> ~/.bashrc
+
+# Enable colored output for less in .bashrc
+RUN echo 'export LESS=" -R"' >> ~/.bashrc
+
+# Enable git prompt support if available
+# RUN echo 'if [ -f /usr/share/git/completion/git-prompt.sh ]; then\n    . /usr/share/git/completion/git-prompt.sh\n    PS1="\\[\\e[32m\\]\\u@\\h \\[\\e[33m\\]\\W$(__git_ps1 \" (%s)\")\\[\\e[0m\\]]\\$ "\nfi' >> ~/.bashrc
+
+# Enable color in the prompt for bash >= 4.0
+RUN echo 'force_color_prompt=yes\nif [ -n "$force_color_prompt" ]; then\n    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then\n        color_prompt=yes\n    else\n        color_prompt=\n    fi\nfi\n\nif [ "$color_prompt" = yes ]; then\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\[\\033[01;32m\\]\\u@\\h\\[\\033[00m\\]:\\[\\033[01;34m\\]\\w\\[\\033[00m\\]\\$ "\nelse\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\u@\\h:\\w\\$ "\nfi\nunset color_prompt force_color_prompt' >> ~/.bashrc
+
+# Install VSCode CLI
+RUN curl -sL "https://code.visualstudio.com/sha/download?build=stable&os=cli-alpine-x64" \
+        --output /tmp/vscode-cli.tar.gz && \
+    tar -xf /tmp/vscode-cli.tar.gz -C /usr/bin && \
+    rm /tmp/vscode-cli.tar.gz
+
+RUN git config --global user.email "[email protected]" && \
+    git config --global user.name "Masoud KA"
+
+# CMD ["code", "tunnel"]

docker/Dockerfile_python

@@ -0,0 +1,86 @@
+FROM python:3.12
+
+# Install necessary packages
+ARG DEBIAN_FRONTEND=noninteractive
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+    ca-certificates \
+    build-essential \
+    git \
+    curl \
+    tmux \
+    htop \
+    nano \
+    vim \
+    pipx \
+    libreadline-dev \
+    libncursesw5-dev \
+    libssl-dev \
+    libsqlite3-dev \
+    libgdbm-dev \
+    libc6-dev \
+    libbz2-dev \
+    libffi-dev \
+    libpq-dev \
+    liblzma-dev \
+    libopenblas-dev \
+    libgl1-mesa-dev \
+    libglib2.0-0 \
+    libsm6 \
+    libxext6 \
+    ffmpeg \
+    tk-dev \
+    ninja-build && \
+    apt-get clean && \
+    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+RUN pipx ensurepath
+
+RUN pipx install poetry && \
+    pipx install virtualenv && \
+    pipx install pipenv
+
+
+# Install VSCode CLI
+RUN curl -sL "https://code.visualstudio.com/sha/download?build=stable&os=cli-alpine-x64" \
+        --output /tmp/vscode-cli.tar.gz && \
+    tar -xf /tmp/vscode-cli.tar.gz -C /usr/bin && \
+    rm /tmp/vscode-cli.tar.gz
+
+
+# Install miniconda
+ENV CONDA_DIR=/opt/conda
+
+RUN curl -o ~/miniconda.sh https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
+    /bin/bash ~/miniconda.sh -b -p /opt/conda
+
+# Put conda in path
+ENV PATH=$CONDA_DIR/bin:$PATH
+
+RUN rm ~/miniconda.sh
+
+RUN conda init bash
+RUN conda config --set auto_activate_base false
+
+# Add ssh-ccdb function to .bashrc to connect to CCDB servers (cedar, beluga, narval)
+RUN echo 'ssh-ccdb() {\n    local server\n    case $1 in\n        cedar)\n            server="cedar.alliancecan.ca"\n            ;;\n        beluga)\n            server="beluga.alliancecan.ca"\n            ;;\n        narval)\n            server="narval.alliancecan.ca"\n            ;;\n        *)\n            echo "Usage: ssh-ccdb {cedar|beluga|narval}"\n            return 1\n            ;;\n    esac\n    ssh mka267@$server\n}' >> ~/.bashrc
+
+# Enable color support for ls and grep in .bashrc
+RUN echo 'if [ -x /usr/bin/dircolors ]; then\n    eval "$(dircolors -b)"\n    alias ls="ls --color=auto"\n    alias grep="grep --color=auto"\n    alias fgrep="fgrep --color=auto"\n    alias egrep="egrep --color=auto"\nfi' >> ~/.bashrc
+
+# Add custom colored prompt to .bashrc
+RUN echo 'PS1="\\[\\e[0;32m\\]\\u@\\h\\[\\e[m\\]:\\[\\e[0;34m\\]\\w\\[\\e[m\\]\\$ "' >> ~/.bashrc
+
+# Enable colored output for less in .bashrc
+RUN echo 'export LESS=" -R"' >> ~/.bashrc
+
+# Enable git prompt support if available
+# RUN echo 'if [ -f /usr/share/git/completion/git-prompt.sh ]; then\n    . /usr/share/git/completion/git-prompt.sh\n    PS1="\\[\\e[32m\\]\\u@\\h \\[\\e[33m\\]\\W$(__git_ps1 \" (%s)\")\\[\\e[0m\\]]\\$ "\nfi' >> ~/.bashrc
+
+# Enable color in the prompt for bash >= 4.0
+RUN echo 'force_color_prompt=yes\nif [ -n "$force_color_prompt" ]; then\n    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then\n        color_prompt=yes\n    else\n        color_prompt=\n    fi\nfi\n\nif [ "$color_prompt" = yes ]; then\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\[\\033[01;32m\\]\\u@\\h\\[\\033[00m\\]:\\[\\033[01;34m\\]\\w\\[\\033[00m\\]\\$ "\nelse\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\u@\\h:\\w\\$ "\nfi\nunset color_prompt force_color_prompt' >> ~/.bashrc
+
+RUN git config --global user.email "[email protected]" && \
+    git config --global user.name "Masoud KA"
+
+# CMD ["code", "tunnel"]

docker/Dockerfile_ubuntu

@@ -0,0 +1,88 @@
+FROM ubuntu:24.04
+
+# Install necessary packages
+ARG DEBIAN_FRONTEND=noninteractive
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+    ca-certificates \
+    less \
+    wget \
+    gpustat \
+    git \
+    curl \
+    build-essential \
+    tmux \
+    htop \
+    nano \
+    vim \
+    pipx \
+    libreadline-dev \
+    libncursesw5-dev \
+    libssl-dev \
+    libsqlite3-dev \
+    libgdbm-dev \
+    libc6-dev \
+    libbz2-dev \
+    libffi-dev \
+    libpq-dev \
+    liblzma-dev \
+    libopenblas-dev \
+    libgl1-mesa-dev \
+    libglib2.0-0 \
+    libsm6 \
+    libxext6 \
+    ffmpeg \
+    tk-dev \
+    ninja-build && \
+    apt-get clean && \
+    rm -rf /var/lib/apt/lists/*
+
+# Create /root/.ssh directory
+RUN mkdir -p /root/.ssh
+
+# Install miniconda
+ENV CONDA_DIR=/opt/conda
+RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh && \
+    /bin/bash ~/miniconda.sh -b -p /opt/conda && \
+    rm ~/miniconda.sh
+
+# Put conda in path so we can use conda activate
+ENV PATH=$CONDA_DIR/bin:$PATH
+
+# Initialize conda
+RUN conda init bash
+RUN conda config --set auto_activate_base false
+
+# Install VSCode CLI
+RUN curl -sL "https://code.visualstudio.com/sha/download?build=stable&os=cli-alpine-x64" \
+        --output /tmp/vscode-cli.tar.gz && \
+    tar -xf /tmp/vscode-cli.tar.gz -C /usr/bin && \
+    rm /tmp/vscode-cli.tar.gz
+
+RUN pipx ensurepath && \
+    pipx install poetry && \
+    pipx install virtualenv && \
+    pipx install pipenv
+
+# Add ssh-ccdb function to .bashrc to connect to CCDB servers (cedar, beluga, narval)
+RUN echo 'ssh-ccdb() {\n    local server\n    case $1 in\n        cedar)\n            server="cedar.alliancecan.ca"\n            ;;\n        beluga)\n            server="beluga.alliancecan.ca"\n            ;;\n        narval)\n            server="narval.alliancecan.ca"\n            ;;\n        *)\n            echo "Usage: ssh-ccdb {cedar|beluga|narval}"\n            return 1\n            ;;\n    esac\n    ssh mka267@$server\n}' >> ~/.bashrc
+
+# Enable color support for ls and grep in .bashrc
+RUN echo 'if [ -x /usr/bin/dircolors ]; then\n    eval "$(dircolors -b)"\n    alias ls="ls --color=auto"\n    alias grep="grep --color=auto"\n    alias fgrep="fgrep --color=auto"\n    alias egrep="egrep --color=auto"\nfi' >> ~/.bashrc
+
+# Add custom colored prompt to .bashrc
+RUN echo 'PS1="\\[\\e[0;32m\\]\\u@\\h\\[\\e[m\\]:\\[\\e[0;34m\\]\\w\\[\\e[m\\]\\$ "' >> ~/.bashrc
+
+# Enable colored output for less in .bashrc
+RUN echo 'export LESS=" -R"' >> ~/.bashrc
+
+# Enable git prompt support if available
+# RUN echo 'if [ -f /usr/share/git/completion/git-prompt.sh ]; then\n    . /usr/share/git/completion/git-prompt.sh\n    PS1="\\[\\e[32m\\]\\u@\\h \\[\\e[33m\\]\\W$(__git_ps1 \" (%s)\")\\[\\e[0m\\]]\\$ "\nfi' >> ~/.bashrc
+
+# Enable color in the prompt for bash >= 4.0
+RUN echo 'force_color_prompt=yes\nif [ -n "$force_color_prompt" ]; then\n    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then\n        color_prompt=yes\n    else\n        color_prompt=\n    fi\nfi\n\nif [ "$color_prompt" = yes ]; then\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\[\\033[01;32m\\]\\u@\\h\\[\\033[00m\\]:\\[\\033[01;34m\\]\\w\\[\\033[00m\\]\\$ "\nelse\n    PS1="\\${debian_chroot:+(\$debian_chroot)}\\u@\\h:\\w\\$ "\nfi\nunset color_prompt force_color_prompt' >> ~/.bashrc
+
+RUN git config --global user.email "[email protected]" && \
+    git config --global user.name "Masoud KA"
+
+# CMD ["code", "tunnel"]