README.md

BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext_pub_section

• original model file name: textclassifer_BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext_pubmed_20k
• This is a fine-tuned checkpoint of microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext for document section text classification
• possible document section classes are:BACKGROUND, CONCLUSIONS, METHODS, OBJECTIVE, RESULTS,

metadata

training_metrics

• val_accuracy: 0.8724678754806519

• val_matthewscorrcoef: 0.8290084004402161

• val_f1score: 0.8707401752471924

• val_cross_entropy: 0.3521413803100586

• epoch: 4.0

• train_accuracy_step: 0.6875

• train_matthewscorrcoef_step: 0.5752688050270081

• train_f1score_step: 0.6875

• train_cross_entropy_step: 0.9718704223632812

• train_accuracy_epoch: 0.8582640886306763

• train_matthewscorrcoef_epoch: 0.8091862797737122

• train_f1score_epoch: 0.8565496206283569

• train_cross_entropy_epoch: 0.39623069763183594

• test_accuracy: 0.863082766532898

• test_matthewscorrcoef: 0.816676676273346

• test_f1score: 0.8613550662994385

• test_cross_entropy: 0.3769755959510803

• date_run: Apr-21-2022_t-02

• huggingface_tag: microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext

training_parameters

• val_accuracy: 0.8724678754806519

• val_matthewscorrcoef: 0.8290084004402161

• val_f1score: 0.8707401752471924

• val_cross_entropy: 0.3521413803100586

• epoch: 4.0

• train_accuracy_step: 0.6875

• train_matthewscorrcoef_step: 0.5752688050270081

• train_f1score_step: 0.6875

• train_cross_entropy_step: 0.9718704223632812

• train_accuracy_epoch: 0.8582640886306763

• train_matthewscorrcoef_epoch: 0.8091862797737122

• train_f1score_epoch: 0.8565496206283569

• train_cross_entropy_epoch: 0.39623069763183594

• test_accuracy: 0.863082766532898

• test_matthewscorrcoef: 0.816676676273346

• test_f1score: 0.8613550662994385

• test_cross_entropy: 0.3769755959510803

• date_run: Apr-21-2022_t-02

• huggingface_tag: microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext