Search is not available for this dataset
s__Faecalibacterium_prausnitzii
float64
-1
11.8
s__Streptococcus_salivarius
float64
-1.23
10.6
s__Anaerostipes_hadrus
float64
-1.08
13.3
s__Bacteroides_stercoris
float64
-1.97
10.1
s__Collinsella_aerofaciens
float64
-1.67
12.3
s__Bifidobacterium_longum
float64
-1.34
12.6
s__Bacteroides_plebeius
float64
-2.04
8.01
s__Bacteroides_vulgatus
float64
-0.95
13.8
s__Dorea_longicatena
float64
-1.67
12.4
s__Eubacterium_sp_CAG_251
float64
-1.97
11.2
s__Fusicatenibacter_saccharivorans
float64
-1.1
11.7
s__Coprococcus_comes
float64
-1.7
10.9
s__Ruminococcus_torques
float64
-1.86
11.5
s__Eubacterium_hallii
float64
-0.68
11.7
s__Holdemanella_biformis
float64
-1.97
10.2
s__Bacteroides_uniformis
float64
-1.67
11.2
s__Blautia_wexlerae
float64
1
13.2
s__Gemmiger_formicilis
float64
-1.42
10.1
s__Dorea_formicigenerans
float64
-1.86
9.87
s__Streptococcus_parasanguinis
float64
-1.71
9.99
s__Coprococcus_eutactus
float64
-2.37
11.2
s__Ruminococcus_lactaris
float64
-1.97
10.4
s__Coprococcus_catus
float64
-1.81
9.89
s__Roseburia_intestinalis
float64
-1.81
11.2
s__Roseburia_inulinivorans
float64
-1.42
10.3
s__Phascolarctobacterium_succinatutens
float64
-2.37
10.2
s__Eubacterium_rectale
float64
-1.56
12
s__Blautia_obeum
float64
-1.41
10.8
s__Agathobaculum_butyriciproducens
float64
-1.86
11.4
s__Bacteroides_xylanisolvens
float64
-1.69
9.1
s__Bacteroides_ovatus
float64
-1.86
9.87
s__Bacteroides_thetaiotaomicron
float64
-1.86
10.8
s__Streptococcus_thermophilus
float64
-2.04
10.9
s__Eubacterium_ramulus
float64
-1.86
10.9
s__Bifidobacterium_adolescentis
float64
-1.9
12.7
s__Eubacterium_sp_CAG_274
float64
-2.04
11
s__Lactococcus_lactis
float64
-2.04
7.46
s__Eubacterium_ventriosum
float64
-1.97
9.99
s__Flavonifractor_plautii
float64
-1.97
9.33
s__Lactobacillus_rhamnosus
float64
-2.04
8.21
s__Gemella_sanguinis
float64
-1.92
6.94
s__Streptococcus_infantis
float64
-2.37
6.01
s__Lactobacillus_delbrueckii
float64
-1.92
10.4
s__Hafnia_paralvei
float64
-2.37
0
s__Lactobacillus_curvatus
float64
-2.37
5.69
s__Streptococcus_mitis
float64
-1.9
7.65
s__Rothia_mucilaginosa
float64
-1.92
7.3
s__Oscillibacter_sp_57_20
float64
-1.97
9.43
s__Roseburia_hominis
float64
-1.7
9.92
s__Haemophilus_parainfluenzae
float64
-2.37
8.4
s__Roseburia_sp_CAG_471
float64
-1.9
9.96
s__Actinomyces_odontolyticus
float64
-1.86
6.57
s__Alistipes_finegoldii
float64
-1.52
11.3
s__Alistipes_putredinis
float64
-1.67
11.2
s__Streptococcus_australis
float64
-2.37
8.66
s__Streptococcus_sanguinis
float64
-2.37
7.71
s__Veillonella_atypica
float64
-1.92
7.63
s__Ruminococcus_bromii
float64
-1.49
12.5
s__Haemophilus_sp_HMSC71H05
float64
-2.37
6.74
s__Firmicutes_bacterium_CAG_83
float64
-1.67
10.6
s__Veillonella_dispar
float64
-1.76
8.08
s__Veillonella_parvula
float64
-1.92
8.94
s__Enterococcus_faecium
float64
-1.97
9.89
s__Eubacterium_eligens
float64
-1.76
10.7
s__Actinomyces_sp_S6_Spd3
float64
-2.37
5.31
s__Gemella_haemolysans
float64
-2.37
6.14
s__Allisonella_histaminiformans
float64
-2.04
5.84
s__Lactobacillus_fermentum
float64
-2.04
11.2
s__Leuconostoc_mesenteroides
float64
-2.04
6.46
s__Holdemania_filiformis
float64
-1.97
8.71
s__Rothia_dentocariosa
float64
-2.37
6.3
s__Veillonella_infantium
float64
-2.37
6.45
s__Streptococcus_mutans
float64
-2.37
8.42
s__Streptococcus_oralis
float64
-1.92
7.49
s__Alistipes_onderdonkii
float64
-2.37
8.02
s__Collinsella_intestinalis
float64
-2.04
12.1
s__Enorma_massiliensis
float64
-2.04
9.6
s__Ruminococcus_gnavus
float64
-1.76
12.4
s__Streptococcus_anginosus_group
float64
-2.37
8.11
s__Gemella_morbillorum
float64
-2.37
7.38
s__Actinomyces_sp_HPA0247
float64
-2.04
8.46
s__Actinomyces_sp_oral_taxon_181
float64
-1.81
5.62
s__Actinomyces_sp_HMSC035G02
float64
-2.37
5.6
s__Streptococcus_sp_F0442
float64
-1.92
5.5
s__Streptococcus_cristatus
float64
-2.37
6.61
s__Bacteroides_eggerthii
float64
-1.9
10.1
s__Roseburia_faecis
float64
-1.42
11.8
s__Actinobaculum_sp_oral_taxon_183
float64
-2.37
3.93
s__Veillonella_tobetsuensis
float64
-2.37
4.96
s__Veillonella_rogosae
float64
-2.37
0
s__Clostridium_sp_CAG_299
float64
-2.37
5.84
s__Bacteroides_coprocola
float64
-2.37
8.72
s__Actinomyces_johnsonii
float64
-2.37
3.86
s__Asaccharobacter_celatus
float64
-1.32
10.2
s__Streptococcus_sp_HMSC034E03
float64
-2.37
0
s__Granulicatella_adiacens
float64
-2.37
3.02
s__Olsenella_scatoligenes
float64
-2.37
6.83
s__Eubacterium_brachy
float64
-2.37
5.38
s__Gordonibacter_pamelaeae
float64
-1.23
9.62
s__Eubacterium_sp_OM08_24
float64
-2.37
7.69
s__Cardiobacterium_valvarum
float64
-2.37
0
s__Eubacterium_sp_CAG_180
float64
-1.97
11.8
s__Parabacteroides_merdae
float64
-1.67
10.4
s__Roseburia_sp_CAG_182
float64
-2.37
8.41
s__Bacteroides_dorei
float64
-2.37
9.75
s__Eubacterium_siraeum
float64
-1.77
11
s__Barnesiella_intestinihominis
float64
-1.97
9.94
s__Methanobrevibacter_smithii
float64
-1.92
11.5
s__Firmicutes_bacterium_CAG_145
float64
-1.77
9.17
s__Bacteroides_pectinophilus
float64
-2.37
11
s__Bacteroides_cellulosilyticus
float64
-1.92
9.43
s__Adlercreutzia_equolifaciens
float64
-1.32
10.2
s__Ruminococcus_bicirculans
float64
-1.76
12.1
s__Firmicutes_bacterium_CAG_110
float64
-1.97
9.72
s__Parabacteroides_distasonis
float64
-1.67
11.3
s__Ruthenibacterium_lactatiformans
float64
-0.86
9.64
s__Anaeromassilibacillus_sp_An250
float64
-1.77
9.15
s__Roseburia_sp_CAG_303
float64
-2.37
8.33
s__Odoribacter_splanchnicus
float64
-1.53
8.67
s__Oscillibacter_sp_CAG_241
float64
-1.77
10.8
s__Firmicutes_bacterium_CAG_95
float64
-2.04
8.62
s__Alistipes_shahii
float64
-1.7
7.93
s__Actinomyces_sp_ICM47
float64
-2.04
6.42
s__Eggerthella_lenta
float64
-1.81
10.7
s__Escherichia_coli
float64
-1.77
13.2
s__Enterococcus_faecalis
float64
-2.04
9.71
s__Butyricimonas_virosa
float64
-1.9
8.64
s__Bacteroides_sp_CAG_144
float64
-2.37
6.49
s__Enterorhabdus_caecimuris
float64
-1.43
7.68
s__Intestinibacter_bartlettii
float64
-1.97
9.04
s__Massiliomicrobiota_timonensis
float64
-2.04
7.8
s__Lactobacillus_plantarum
float64
-2.37
9.34
s__Leuconostoc_pseudomesenteroides
float64
-2.04
5.42
s__Clostridium_leptum
float64
-1.77
8.12
s__Erysipelatoclostridium_ramosum
float64
-1.97
10.6
s__Slackia_isoflavoniconvertens
float64
-1.86
10.1
s__Lactobacillus_otakiensis
float64
-2.37
5.05
s__Romboutsia_ilealis
float64
-2.04
6.65
s__Roseburia_sp_CAG_309
float64
-2.37
7.76
s__Phascolarctobacterium_sp_CAG_266
float64
-2.37
8.96
s__Clostridium_innocuum
float64
-1.81
9.51
s__Streptococcus_vestibularis
float64
-1.92
7.87
s__Clostridium_sp_CAG_58
float64
-1.81
9.78
s__Lactococcus_petauri
float64
-2.04
7.97
s__Actinomyces_graevenitzii
float64
-2.04
7.83
s__Aeriscardovia_aeriphila
float64
-2.37
6.24
s__Bifidobacterium_animalis
float64
-2.37
10.4
s__Enterococcus_pseudoavium
float64
-2.37
1.32
s__Bilophila_wadsworthia
float64
-1.97
7.71
s__Akkermansia_muciniphila
float64
-1.77
12.1
s__Bacteroides_intestinalis
float64
-2.04
9.2
s__Dialister_sp_CAG_357
float64
-2.37
11.1
s__Bifidobacterium_pseudocatenulatum
float64
-2.04
11.5
s__Eubacterium_sp_CAG_38
float64
-1.97
7.79
s__Bacteroides_fragilis
float64
-1.97
10
s__Clostridium_sp_CAG_253
float64
-2.37
6.93
s__Ruminococcus_obeum_CAG_39
float64
-2.37
8.31
s__Clostridium_sp_CAG_167
float64
-2.37
10.2
s__Bifidobacterium_bifidum
float64
-1.92
12.3
s__Bifidobacterium_catenulatum
float64
-2.04
11.7
s__Blautia_sp_CAG_257
float64
-1.97
13
s__Lactobacillus_gasseri
float64
-2.04
8.57
s__Intestinimonas_butyriciproducens
float64
-1.86
8.06
s__Lactobacillus_acidophilus
float64
-2.37
5.63
s__Parasutterella_excrementihominis
float64
-1.97
8.82
s__Alistipes_indistinctus
float64
-2.04
7.77
s__Eisenbergiella_massiliensis
float64
-1.92
8.05
s__Proteobacteria_bacterium_CAG_139
float64
-2.04
9.25
s__Clostridium_spiroforme
float64
-2.04
8.47
s__Catabacter_hongkongensis
float64
-2.37
5.05
s__Clostridium_citroniae
float64
-1.92
7.88
s__Lawsonibacter_asaccharolyticus
float64
-1.59
8.34
s__Hungatella_hathewayi
float64
-1.81
8.3
s__Eisenbergiella_tayi
float64
-1.97
9.33
s__Turicibacter_sanguinis
float64
-2.04
8.87
s__Coprobacter_fastidiosus
float64
-2.04
6.68
s__Bacteroides_sp_D2
float64
-2.37
2.6
s__Sellimonas_intestinalis
float64
-1.97
9.67
s__Coprobacillus_cateniformis
float64
-2.04
8.45
s__Clostridium_scindens
float64
-1.92
7.65
s__Eubacterium_sulci
float64
-2.37
5.1
s__Dielma_fastidiosa
float64
-2.04
8.27
s__Clostridium_bolteae_CAG_59
float64
-2.04
4.57
s__Streptococcus_gordonii
float64
-1.92
7.4
s__Alistipes_inops
float64
-2.04
11
s__Bacteroides_finegoldii
float64
-2.37
9.32
s__Monoglobus_pectinilyticus
float64
-2.04
9.37
s__Haemophilus_sputorum
float64
-2.37
3.39
s__Propionibacterium_freudenreichii
float64
-2.37
8.76
s__Paraprevotella_xylaniphila
float64
-2.37
8.13
s__Blautia_hydrogenotrophica
float64
-1.97
7.67
s__Dialister_invisus
float64
-1.92
9.98
s__Clostridium_clostridioforme
float64
-2.37
10.8
s__Paraprevotella_clara
float64
-2.37
6.31
s__Bacteroides_nordii
float64
-2.37
5.76
s__Ruminococcaceae_bacterium_D16
float64
-2.04
7.42
s__Clostridium_lavalense
float64
-1.9
7.69
s__Bifidobacterium_dentium
float64
-2.37
8.26
s__Bacteroides_faecichinchillae
float64
-2.37
4.06
s__Clostridium_bolteae
float64
-1.79
9.04
s__Streptococcus_sp_A12
float64
-2.37
5.14
s__Lachnoclostridium_sp_An14
float64
-1.97
9.03
s__Lachnoclostridium_sp_An138
float64
-2.37
5
s__Actinomyces_naeslundii
float64
-2.37
6.36
s__Anaerotruncus_colihominis
float64
-1.97
7.13
s__Bacteroides_faecis
float64
-1.97
10.1
s__Actinomyces_sp_oral_taxon_448
float64
-2.37
6.17
s__Enterococcus_italicus
float64
-2.37
4.64
s__Actinomyces_oris
float64
-2.37
6.47
s__Bacteroides_caccae
float64
-1.81
10.2
s__Firmicutes_bacterium_CAG_170
float64
-2.37
6.82
s__Denitrobacterium_detoxificans
float64
-2.37
4.38
s__Desulfovibrio_piger
float64
-2.37
7.67
s__Firmicutes_bacterium_CAG_238
float64
-2.04
8.9
s__Mogibacterium_diversum
float64
-2.37
4.42
s__Solobacterium_moorei
float64
-2.37
7.62
s__Atopobium_rimae
float64
-2.37
7.87
s__Clostridium_disporicum
float64
-2.04
9.7
s__Dorea_sp_CAG_317
float64
-2.37
9.39
s__Anaeromassilibacillus_sp_An172
float64
-2.37
0
s__Blautia_coccoides
float64
-2.37
7.08
s__Clostridium_symbiosum
float64
-1.9
10.3
s__Anaeroglobus_geminatus
float64
-2.37
0
s__Saccharomyces_cerevisiae
float64
-2.37
5.13
s__Clostridium_paraputrificum
float64
-2.37
7.08
s__Enterococcus_avium
float64
-2.37
8.57
s__Terrisporobacter_othiniensis
float64
-2.37
0
s__Lachnospira_pectinoschiza
float64
-1.97
10
s__Prevotella_copri
float64
-1.97
13.1
s__Bacteroides_massiliensis
float64
-1.9
9.15
s__Clostridium_asparagiforme
float64
-2.04
5.82
s__Lactobacillus_pontis
float64
-2.37
3.12
s__Anaerofilum_sp_An201
float64
-2.37
4.46
s__Bacteroides_clarus
float64
-2.04
9.32
s__Abiotrophia_sp_HMSC24B09
float64
-2.37
5.01
s__Streptococcus_sp_M334
float64
-2.37
3.3
s__Clostridium_aldenense
float64
-2.37
3.92
s__Clostridium_sp_7_2_43FAA
float64
-2.37
0
s__Lactococcus_garvieae
float64
-2.04
7.31
s__Propionibacterium_acidifaciens
float64
-2.37
5.49
s__Megamonas_funiformis_CAG_377
float64
-2.04
8.12
s__Absiella_dolichum
float64
-2.37
6.23
s__Harryflintia_acetispora
float64
-2.37
6.37
s__Eubacterium_dolichum_CAG_375
float64
-2.37
6.25
s__Megamonas_hypermegale
float64
-2.04
7.46
s__Megasphaera_sp_DISK_18
float64
-2.37
5.45
s__Blautia_producta
float64
-2.37
6.73
s__Megamonas_funiformis
float64
-2.04
7.56
s__Streptococcus_sp_NLAE_zl_C503
float64
-2.37
3.96
s__Bifidobacterium_breve
float64
-2.04
12.4
s__Actinomyces_massiliensis
float64
-2.37
2.82
s__Phascolarctobacterium_faecium
float64
-2.37
9.04
s__Pseudopropionibacterium_propionicum
float64
-2.37
2.7
s__Acidaminococcus_intestini
float64
-2.04
9.13
s__Lactonifactor_longoviformis
float64
-2.37
4.11
s__Rikenella_microfusus
float64
-2.37
5.53
s__Clostridium_sp_D5
float64
-2.37
3.91
s__Clostridium_saccharolyticum
float64
-1.97
9.46
s__Faecalicatena_orotica
float64
-2.37
0
s__Firmicutes_bacterium_CAG_94
float64
-1.97
9.41
s__Anaerofustis_stercorihominis
float64
-1.97
7.67
s__Clostridium_methylpentosum
float64
-2.37
6.34
s__Anaerotignum_lactatifermentans
float64
-2.04
10.7
s__Atopobium_parvulum
float64
-2.37
4.56
s__Eubacteriaceae_bacterium_CHKCI005
float64
-2.37
4.45
s__Veillonella_sp_T11011_6
float64
-2.37
5.05
s__Cronobacter_sakazakii
float64
-2.37
7.8
s__Fusobacterium_varium
float64
-2.37
6.38
s__Fusobacterium_nucleatum
float64
-1.9
6.3
s__Pediococcus_acidilactici
float64
-2.37
7.27
s__Olsenella_uli
float64
-2.37
6.15
s__Streptococcus_sobrinus
float64
-2.37
5.25
s__Parvimonas_sp_KA00067
float64
-2.37
8.55
s__Prevotella_sp_CAG_1320
float64
-2.37
10.5
s__Clostridium_butyricum
float64
-2.37
3.69
s__Parascardovia_denticolens
float64
-2.37
4.4
s__Citrobacter_braakii
float64
-2.37
10.9
s__Tyzzerella_nexilis
float64
-2.37
5.77
s__Peptococcus_niger
float64
-2.37
6.43
s__Bifidobacterium_angulatum
float64
-2.37
10
s__Anaerococcus_vaginalis
float64
-2.37
6.63
s__Lactobacillus_gastricus
float64
-2.37
2.74
s__Actinomyces_sp_oral_taxon_180
float64
-2.37
3.28
s__Catenibacterium_mitsuokai
float64
-2.37
11.2
s__Streptococcus_sp_HPH0090
float64
-2.37
4.83
s__Scardovia_wiggsiae
float64
-2.04
6
s__Bacteroides_salyersiae
float64
-2.37
9.35
s__Mogibacterium_timidum
float64
-2.37
3.01
s__Clostridium_sp_CAG_590
float64
-2.37
10.7
s__Clostridium_sp_CAG_964
float64
-2.37
10.2
s__Treponema_berlinense
float64
-2.37
8.74
s__Firmicutes_bacterium_CAG_555
float64
-2.37
7.95
s__Prevotella_sp_CAG_1092
float64
-2.37
7.36
s__Bacteroides_sp_CAG_633
float64
-2.37
6.54
s__Prevotella_sp_CAG_279
float64
-2.37
10.7
s__Clostridium_sp_CAG_632
float64
-2.37
7.44
s__Atopobium_deltae
float64
-2.37
6.2
s__Lactobacillus_rogosae
float64
-2.04
6.89
s__Ruminococcus_callidus
float64
-2.37
6.97
s__Firmicutes_bacterium_CAG_534
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-2.37
6.23
s__Bacteroides_sp_CAG_598
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-2.37
5.75
s__Bacteroides_galacturonicus
float64
-2.37
8.11
s__Parabacteroides_sp_CAG_409
float64
-2.37
9.23
s__Prevotella_sp_CAG_520
float64
-2.37
5.55
s__Butyrivibrio_sp_CAG_318
float64
-2.04
7.9
s__Prevotella_stercorea
float64
-2.37
7.62
s__Butyrivibrio_crossotus
float64
-2.37
12
s__Clostridium_sp_CAG_411
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-2.37
8.48
s__Bacteroides_sp_CAG_530
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-2.37
7.84
s__Bacteroides_faecis_CAG_32
float64
-2.04
9.63
s__Butyricimonas_synergistica
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-1.97
6.5
s__Parvimonas_micra
float64
-1.92
7.97
s__Mitsuokella_jalaludinii
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-2.37
7.31
s__Sharpea_azabuensis
float64
-2.37
5.36
s__Fretibacterium_fastidiosum
float64
-2.37
4.55
s__Fusobacterium_equinum
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-2.37
3.15
s__Fusobacterium_gonidiaformans
float64
-2.37
6.63
s__Coprobacter_secundus
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-1.97
5.11
s__Enterococcus_durans
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-2.37
7.75
s__Methanosphaera_stadtmanae
float64
-2.37
8.45
s__Prevotella_sp_CAG_873
float64
-2.04
7.69
s__Ruminococcus_sp_CAG_488
float64
-2.37
0
s__Clostridium_sp_CAG_413
float64
-2.37
7.85
s__Prevotella_sp_CAG_617
float64
-2.37
0
s__Bacteroides_sp_CAG_443
float64
-2.37
7.32
s__Blastocystis_sp_subtype_1
float64
-2.37
2.16
s__Cloacibacillus_porcorum
float64
-2.37
1.47
s__Actinomyces_cardiffensis
float64
-2.37
4.62
s__Bacteroides_coprophilus
float64
-2.04
7.91
s__Parabacteroides_goldsteinii
float64
-2.37
8.44
s__Peptostreptococcus_stomatis
float64
-2.04
7.65
s__Eubacterium_limosum
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-2.37
5.99
s__Ruminococcus_sp_CAG_563
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-2.37
0
s__Ruminococcus_sp_CAG_624
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-2.37
5.79
s__Eubacterium_callanderi
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-2.37
3.98
s__Butyribacterium_methylotrophicum
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-2.37
0
s__Anaerotruncus_sp_CAG_528
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-2.37
8.27
s__Ruminococcus_sp_CAG_330
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-2.37
8.52
s__Tetragenococcus_halophilus
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-2.37
0
s__Clostridium_sp_CAG_242
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-2.04
6.94
s__Lactobacillus_sakei
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-2.04
7.58
s__Weissella_viridescens
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-2.37
0
s__Eubacterium_sp_An11
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-2.37
4.54
s__Firmicutes_bacterium_CAG_424
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-2.37
1
s__Lachnoclostridium_sp_An118
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-2.37
4.91
s__Corynebacterium_durum
float64
-2.37
4.91
s__Streptococcus_lutetiensis
float64
-2.37
8.64
s__Lactobacillus_paragasseri
float64
-2.04
9.69
s__Lactobacillus_crispatus
float64
-2.37
4.53
s__Lactobacillus_salivarius
float64
-1.97
8.49
s__Christensenella_minuta
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-2.37
8.32
s__Streptococcus_agalactiae
float64
-2.37
6.77
s__Lactobacillus_antri
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-2.37
2.71
s__Actinomyces_hongkongensis
float64
-2.37
4.27
s__Streptococcus_milleri
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-2.37
4.93
s__Actinomyces_sp_oral_taxon_414
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-2.37
4.37
s__Actinomyces_sp_oral_taxon_897
float64
-2.37
0
s__Streptococcus_pseudopneumoniae
float64
-2.37
3.72
s__Clostridium_hylemonae
float64
-2.37
4.35
s__Alloscardovia_omnicolens
float64
-2.04
7.38
s__Eubacterium_infirmum
float64
-2.37
3
s__Pseudoflavonifractor_capillosus
float64
-2.37
6.05
s__Staphylococcus_equorum
float64
-2.37
4.97
s__Faecalitalea_cylindroides
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-1.97
9.3
s__Corynebacterium_casei
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-2.37
3.81
s__Clostridiales_bacterium_1_7_47FAA
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-2.37
5.04
s__Desulfovibrio_sp_An276
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-2.37
0
s__Prevotella_sp_885
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-2.37
9.01
s__Desulfovibrionaceae_bacterium
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-2.37
5.49
s__Actinomyces_turicensis
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-2.37
4.15
s__Prevotella_timonensis
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-2.37
2.36
s__Ruminococcaceae_bacterium_D5
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-2.37
8.94
s__Parabacteroides_johnsonii
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-2.04
8.24
s__Prevotella_bivia
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-2.37
4.36
s__Ruminococcus_sp_CAG_403
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-2.04
10.6
s__Campylobacter_hominis
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-2.37
3.13
s__Streptococcus_downei
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-2.37
5.83
s__Alcaligenes_aquatilis
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-2.37
2.3
s__Stenotrophomonas_maltophilia
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-2.37
4.99
s__Dialister_succinatiphilus
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-2.37
6.58
s__Pseudoflavonifractor_sp_An184
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-2.37
7.74
s__Proteus_vulgaris
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-2.37
4.49
s__Flavonifractor_sp_An10
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-2.37
6.9
s__Leuconostoc_suionicum
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-2.37
4.78
s__Klebsiella_oxytoca
float64
-1.97
11.4
s__Haemophilus_pittmaniae
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-2.37
3.85
s__Neisseria_subflava
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-2.37
2.35
s__Turicimonas_muris
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-2.04
6.3
s__Odoribacter_laneus
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-2.37
7.53
s__Clostridiales_bacterium_CHKCI006
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-2.37
4.16
s__Fusobacterium_sp_CAG_439
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-2.37
5.57
s__Alistipes_timonensis
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-2.37
5.29
s__Candidatus_Gastranaerophilales_bacterium
float64
-2.37
5.93
s__Lactobacillus_animalis
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-2.37
12.1
s__Klebsiella_pneumoniae
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-2.04
12.4
s__Klebsiella_variicola
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-2.04
10.6
s__Klebsiella_quasipneumoniae
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-2.04
10.3
s__Enterobacter_cloacae_complex
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-2.37
7.86
s__Finegoldia_magna
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-2.37
3.4
s__Lactobacillus_amylovorus
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-2.37
11.4
s__Lactobacillus_mucosae
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-2.37
10.7
s__Bifidobacterium_pseudolongum
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-2.37
9.63
s__Acidaminococcus_fermentans
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-2.37
9.05
s__Prevotella_disiens
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-2.37
2.99
s__Peptostreptococcus_anaerobius
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-2.04
7.84
s__Klebsiella_michiganensis
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-2.04
10.4
s__Porphyromonas_uenonis
float64
-1.97
8.09
s__Megasphaera_elsdenii
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-2.04
8.18
s__Faecalicoccus_pleomorphus
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-1.97
10.2
s__Oribacterium_sinus
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-2.37
3.98
s__Citrobacter_sp_MGH106
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-2.37
1.32
s__Megasphaera_hexanoica
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-2.04
5
s__Lachnoanaerobaculum_saburreum
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-2.37
2.03
s__Megasphaera_micronuciformis
float64
-2.37
5.58
s__Lactobacillus_ruminis
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-2.37
5.76
s__Bacillus_aerius
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-2.37
4.6
s__Blautia_hansenii
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-2.37
10.5
s__Rothia_aeria
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-2.37
4.28
s__Lactobacillus_helveticus
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-2.37
4.23
s__Raoultella_planticola
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-2.37
10.5
s__Actinomyces_georgiae
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-2.37
2
s__Oribacterium_parvum
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-2.37
0
s__Fusobacterium_periodonticum
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6.47
s__Dialister_pneumosintes
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-2.37
7.2
s__Peptostreptococcus_sp_MV1
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-2.37
5.87
s__Parvimonas_sp_oral_taxon_393
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-2.37
6.63
s__Abiotrophia_defectiva
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-2.37
5.38
s__Campylobacter_ureolyticus
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-2.37
3.68
s__Prevotella_intermedia
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-2.37
9.41
s__Stomatobaculum_longum
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-2.37
3.46
s__Bifidobacterium_pullorum
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-2.37
8.3
s__Bifidobacterium_saeculare
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-2.37
8.24
s__Bifidobacterium_gallinarum
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-2.37
6.93
s__Muribaculum_intestinale
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-2.37
3.89
s__Streptococcus_parauberis
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-2.37
2.81
s__Enterococcus_casseliflavus
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-2.37
7.06
s__Actinomyces_viscosus
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-2.37
4.34
s__Enterococcus_devriesei
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0
s__Lactobacillus_sanfranciscensis
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5.61
s__Oxalobacter_formigenes
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7.79
s__Leuconostoc_lactis
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-2.37
0
s__Streptococcus_sp_HMSC071D03
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-2.37
6.14
s__Lactobacillus_johnsonii
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6.15
s__Lachnospiraceae_bacterium_oral_taxon_096
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-2.37
0
s__Citrobacter_freundii
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7.72
s__Citrobacter_youngae
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-2.37
8.46
s__Alcaligenes_faecalis
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-2.37
4.6
s__Rhodococcus_qingshengii
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-2.37
4.18
s__Anaerostipes_caccae
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-2.37
5.09
s__Streptococcus_infantarius
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-2.37
7.27
s__Corynebacterium_argentoratense
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-2.37
3.91
s__Prevotella_sp_CAG_891
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-2.37
6.8
s__Clostridium_celatum
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-2.37
6.03
s__Mitsuokella_multacida
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-2.37
5.43
s__Weissella_cibaria
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-2.37
4.25
s__Leuconostoc_carnosum
float64
-2.37
3.4
s__Staphylococcus_succinus
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-2.37
0
s__Escherichia_marmotae
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0
s__Victivallis_vadensis
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3.76
s__Alistipes_sp_An31A
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-2.37
0
s__Staphylococcus_sp_NAM3COL9
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-2.37
0
s__Staphylococcus_aureus
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-2.37
5.05
s__Porphyromonas_asaccharolytica
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-1.97
9.02
s__Streptococcus_viridans
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-2.37
6.89
s__Lachnoanaerobaculum_umeaense
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-2.37
0
s__Cardiobacterium_hominis
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-2.37
0
s__Mogibacterium_pumilum
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-2.37
0
s__Campylobacter_gracilis
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3.44
s__Eubacterium_minutum
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-2.37
0
s__Staphylococcus_carnosus
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-2.37
0
s__Pediococcus_pentosaceus
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-2.37
1.94
s__Blautia_sp_An249
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-2.04
7.06
s__Erysipelothrix_larvae
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-2.37
5.03
s__Lactobacillus_vaginalis
float64
-2.37
4.17
s__Scardovia_inopinata
float64
-2.37
4.48
s__Firmicutes_bacterium_CAG_791
float64
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10.4
s__Bacteroides_fluxus
float64
-2.37
6.07
s__Eubacterium_saphenum
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-2.37
4.34
s__Brachyspira_sp_CAG_700
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-2.37
3.56
s__Rhodococcus_erythropolis
float64
-2.37
4.11
s__Lactobacillus_oris
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-2.37
8.85
s__Lactobacillus_ultunensis
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0
s__Enterococcus_gallinarum
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4.51
s__Corynebacterium_kroppenstedtii
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0
s__Clostridium_perfringens
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8.27
s__Blautia_sp_N6H1_15
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-2.37
9.36
s__Clostridium_sp_CAG_510
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-2.37
0
s__Streptococcus_peroris
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-2.37
4.26
s__Lachnospiraceae_bacterium_2_1_46FAA
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6.12
s__Enterococcus_dispar
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-2.37
4.5
s__Lactobacillus_mindensis
float64
-2.37
1
s__Prevotella_sp_CAG_1031
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9.28
s__Hafnia_alvei
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-2.37
7.86
s__Lachnoclostridium_sp_An131
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5.71
s__Staphylococcus_saprophyticus
float64
-2.37
0
s__Lactobacillus_brevis
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5.11
s__Lactobacillus_senmaizukei
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0
s__Fusobacterium_necrophorum
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-2.37
7.88
s__Butyricicoccus_pullicaecorum
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-2.04
10.6
s__Prevotella_melaninogenica
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-2.37
4.27
s__Prevotella_histicola
float64
-2.37
1.87
s__Lactobacillus_reuteri
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-2.37
6.03
s__Ruminococcus_sp_CAG_579
float64
-2.37
9.84
s__Lactobacillus_parabuchneri
float64
-2.37
4.88
s__Candida_albicans
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-2.04
7.02
s__Staphylococcus_haemolyticus
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-2.04
6.48
s__Staphylococcus_epidermidis
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6.29
s__Lactococcus_raffinolactis
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-2.04
3.33
s__Sanguibacteroides_justesenii
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-2.04
5.88
s__Enterococcus_raffinosus
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0
s__Actinomyces_sp_oral_taxon_170
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0
s__Prevotella_corporis
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2.09
s__Fusobacterium_naviforme
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8.62
s__Fusobacterium_sp_oral_taxon_370
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9.17
s__Morganella_morganii
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1
s__Porphyromonas_gingivalis
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4.45
s__Leptotrichia_sp_oral_taxon_215
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3.7
s__Oscillibacter_sp_PC13
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-2.37
3.86
s__Flavonifractor_sp_An100
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-2.37
5.43
s__Gemella_asaccharolytica
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4.25
s__Eikenella_corrodens
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5.85
s__Bifidobacterium_scardovii
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3.92
s__Streptococcus_pneumoniae
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3.67
s__Gardnerella_vaginalis
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2.03
s__Subdoligranulum_variabile
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4.09
s__Bacteroides_sp_CAG_462
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0
s__Bacteroides_sp_43_108
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0
s__Prevotella_denticola
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7.38
s__Alloprevotella_tannerae
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7.62
s__Clostridium_sp_chh4_2
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5.96
s__Prevotella_nigrescens
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5.46
s__Slackia_exigua
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4.98
s__Selenomonas_sputigena
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4.02
s__Prevotella_oris
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3.76
s__Pyramidobacter_piscolens
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4.84
s__Clostridium_ventriculi
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3.16
s__Lactobacillus_iners
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3.89
s__Prevotella_sp_CAG_5226
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8.72
s__Acinetobacter_johnsonii
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4.79
s__Peptoniphilus_harei
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5.08
s__Leptotrichia_sp_oral_taxon_212
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4.07
s__Murimonas_intestini
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4.04
s__Streptococcus_massiliensis
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3.65
s__Streptococcus_sp_HMSC070B10
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2.65
s__Leptotrichia_hofstadii
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1
s__Prevotella_sp_AM42_24
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0
s__Lactobacillus_kalixensis
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0
s__Anaerobiospirillum_thomasii
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0
s__Prevotella_bergensis
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0
s__Porphyromonas_sp_HMSC065F10
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3.52
s__Enterobacter_mori
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2.82
s__Peptoniphilus_lacrimalis
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2.4
s__Prevotella_sp_CAG_485
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0
s__Lactobacillus_kefiri
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0
s__Carnobacterium_divergens
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0
s__Prevotella_sp_CAG_1185
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1.41
s__Eubacterium_nodatum
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2.85
s__Pediococcus_sp
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7.45
s__Pediococcus_parvulus
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6.71
s__Lactobacillus_buchneri
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6.68
s__Actinomyces_radicidentis
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6.36
s__Firmicutes_bacterium_CAG_646
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6.09
s__Raoultella_ornithinolytica
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6.71
s__Citrobacter_portucalensis
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5.86
s__Chlamydia_ibidis
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2.51
s__Streptococcus_pasteurianus
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1.82
s__Fusobacterium_mortiferum
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4.33
s__Treponema_porcinum
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8.16
s__Prevotella_sp_P3_122
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4.8
s__Lactobacillus_versmoldensis
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0
s__Citrobacter_koseri
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0
s__Dialister_micraerophilus
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6.82
s__Prevotella_buccalis
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5.9
s__Staphylococcus_warneri
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3.01
s__Aggregatibacter_segnis
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2.16
s__Actinomyces_meyeri
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1.93
s__Enterococcus_hirae
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8.65
s__Marvinbryantia_formatexigens
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s__Alistipes_sp_An66
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0
s__Kluyvera_intestini
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0
s__Corynebacterium_variabile
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0
s__Kosakonia_sp_S29
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0
s__Bacteroides_coagulans
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0
s__Veillonella_denticariosi
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3.85
s__Veillonella_rodentium
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3.41
s__Desulfovibrio_vulgaris
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6.51
s__Selenomonas_noxia
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2.43
s__Eggerthia_catenaformis
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s__Neisseria_flavescens
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2.77
s__Kingella_oralis
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1.76
s__Neisseria_sicca
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1.21
s__Citrobacter_werkmanii
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5.17
s__Citrobacter_pasteurii
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5.03
s__Fusobacterium_ulcerans
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3.48
s__Staphylococcus_xylosus
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4.19
s__Lachnoclostridium_sp_An169
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2.22
s__Campylobacter_concisus
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5.33
s__Campylobacter_jejuni
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3.97
s__Brevibacterium_aurantiacum
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3.44
s__Brevibacterium_linens
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s__Megasphaera_sp_MJR8396C
float64
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0
s__Streptococcus_gallolyticus
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s__Lactobacillus_apis
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s__Anaerostipes_sp_494a
float64
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s__Lactobacillus_kullabergensis
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s__Lactobacillus_kimbladii
float64
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target
int64
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1

Publication Abstract

Colorectal cancer, a commonly diagnosed cancer in the elderly, often develops slowly from benign polyps called adenoma. The gut microbiota is believed to be directly involved in colorectal carcinogenesis. The identity and functional capacity of the adenoma- or carcinoma-related gut microbe(s), however, have not been surveyed in a comprehensive manner. Here we perform a metagenome-wide association study (MGWAS) on stools from advanced adenoma and carcinoma patients and from healthy subjects, revealing microbial genes, strains and functions enriched in each group. An analysis of potential risk factors indicates that high intake of red meat relative to fruits and vegetables appears to associate with outgrowth of bacteria that might contribute to a more hostile gut environment. These findings suggest that faecal microbiome-based strategies may be useful for early diagnosis and treatment of colorectal adenoma or carcinoma.

Dataset

156 metagenomic shotgun-sequenced faecal samples from colorectal adenoma and carcinoma patients and healthy controls

Configurations

  • presence-absence
  • CLR

Usage

dataset = load_dataset("wwydmanski/colorectal-carcinoma-microbiome-fengq", "presence-absence")
train_dataset, test_dataset = dataset['train'], dataset['test']
X_train = np.array(train_dataset['values'])
y_train = np.array(train_dataset['target'])

X_test = np.array(test_dataset['values'])
y_test = np.array(test_dataset['target'])
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