Christina Theodoris

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New activity in ctheodoris/Geneformer about 19 hours ago

Issue in Embedding Extraction

4

#501 opened 2 days ago by

shakeel604

updated a model about 19 hours ago

ctheodoris/Geneformer

Fill-Mask • Updated about 19 hours ago • 2k • 221

New activity in ctheodoris/Geneformer 8 days ago

Classifier stuck on validate

1

#500 opened 8 days ago by

sanderssm

get_state_embs <cls> token missing in token dictionary

1

#499 opened 8 days ago by

Yuxi113

New activity in ctheodoris/Geneformer 10 days ago

how to load fine_tuned_models/gf-12L-95M-i4096_MTLCellClassifier_CELLxGENE_240522

1

#498 opened 10 days ago by

vtrifonov

In silico reprogramming - Enquiry on availability of this code

1

#497 opened 10 days ago by

vivekksingh

Model fine-tuning results problem

1

#496 opened 10 days ago by

HJY12138

New activity in ctheodoris/Geneformer 13 days ago

Cardiomyocyte Dataset Pre-Processing

2

#495 opened 13 days ago by

ro2h5

Choosing of Geneformer-predicted targets for wet lab experiments

2

#494 opened 13 days ago by

ro2h5

New activity in ctheodoris/Geneformer 16 days ago

About low precision model and data possibility

1

#493 opened 16 days ago by

Looong

New activity in ctheodoris/Geneformer 17 days ago

MTL classifier Perturbation emb mode

1

#492 opened 21 days ago by

saranyabalachandran

New activity in ctheodoris/Geneformer 22 days ago

Label mapping for using fine tuned model with in silico perturber?

2

#491 opened 23 days ago by

ag2022

New activity in ctheodoris/Geneformer 23 days ago

Had a question about the classifier and the metadata you mentioned attr_to_balance set to ["disease","lvef","age","sex","length"]

1

#490 opened 24 days ago by

fhfhede

New activity in ctheodoris/Geneformer 26 days ago

Splitting dataset

6

#487 opened about 1 month ago by

ZYSK-huggingface

New activity in ctheodoris/Geneformer 27 days ago

30m Model Only Output 18360 Gene Embeddings Instead of 25424

1

#489 opened 27 days ago by

parkjosh523

New activity in ctheodoris/Geneformer 28 days ago

Inquiry About PEFT Compatibility Issue

3

#466 opened 2 months ago by

zzzk123

Getting an error while using extract_embs to extract geneformer embeddings

6

#488 opened 29 days ago by

GalenP

New activity in ctheodoris/Geneformer 29 days ago

Replicating results for Figure 6

15

#246 opened over 1 year ago by

MinieRosie

New activity in ctheodoris/Geneformer about 1 month ago

median computation : gene_median_dictionary_gc95M

3

#486 opened about 1 month ago by

shakeel604

Different N_Detections for OE or deletion of same gene with same dataset

2

#485 opened about 1 month ago by

ag2022