Christina Theodoris

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New activity in ctheodoris/Geneformer 1 day ago

Facing issue with get_stats for in silico perturbation of a set of genes

1

#504 opened 21 days ago by

vivekksingh

wanted to know about Number of trials for hyperparameter tuning

1

#513 opened 1 day ago by

fhfhede

New activity in ctheodoris/Geneformer 3 days ago

about num_classes of emb_extractor

3

#512 opened 3 days ago by

allenxiao

New activity in ctheodoris/Geneformer 4 days ago

How to fine-tune your model for data imputation

9

#507 opened 11 days ago by

cjuigne

Question about normalization of raw gene counts

1

#510 opened 4 days ago by

michauhl

Question about rank-based gene ordering in Geneformer

1

#509 opened 4 days ago by

zs1524

New activity in ctheodoris/Geneformer 9 days ago

in_silico_perturber runtime issue

1

#508 opened 9 days ago by

mmlSk23

New activity in ctheodoris/Geneformer 12 days ago

Decoding Gene Embeddings

1

#502 opened 23 days ago by

cstansbu

Is there a way to remove batch effects in data using the MTL classifier

1

#503 opened 21 days ago by

fhfhede

tokenizing leads to missing genes

2

#506 opened 14 days ago by

marvany

New activity in ctheodoris/Geneformer 16 days ago

get_state_embs <cls> token missing in token dictionary

4

#499 opened about 1 month ago by

Yuxi113

New activity in ctheodoris/Geneformer 23 days ago

Issue in Embedding Extraction

4

#501 opened 24 days ago by

shakeel604

updated a model 23 days ago

ctheodoris/Geneformer

Fill-Mask • Updated 23 days ago • 908 • 224

New activity in ctheodoris/Geneformer 30 days ago

Classifier stuck on validate

1

#500 opened 30 days ago by

sanderssm

New activity in ctheodoris/Geneformer about 1 month ago

how to load fine_tuned_models/gf-12L-95M-i4096_MTLCellClassifier_CELLxGENE_240522

1

#498 opened about 1 month ago by

vtrifonov

In silico reprogramming - Enquiry on availability of this code

1

#497 opened about 1 month ago by

vivekksingh

Model fine-tuning results problem

1

#496 opened about 1 month ago by

HJY12138

Cardiomyocyte Dataset Pre-Processing

2

#495 opened about 1 month ago by

ro2h5

Choosing of Geneformer-predicted targets for wet lab experiments

2

#494 opened about 1 month ago by

ro2h5

About low precision model and data possibility

1

#493 opened about 1 month ago by

Looong