ctheodoris
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Geneformer

Inference Endpoints

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14 contributors

History: 67 commits

Christina Theodoris

Add instructions to convert gene annotations w/ Ensembl Biomart

77eb432 over 1 year ago

examples
Add instructions to convert gene annotations w/ Ensembl Biomart over 1 year ago
geneformer-12L-30M
Upload 12 layer Geneformer model over 1 year ago
geneformer
Modify tokenizer to allow renaming attr names btwn loom and .dataset over 1 year ago
.gitattributes

1.24 kB

Add gene name : Ensembl ID dictionary over 1 year ago
.gitignore

3.08 kB

Add gitignore file over 1 year ago
MANIFEST.in

127 Bytes

Fixes to stats and adding gene dict attempt number 2 (#13) over 1 year ago
README.md

5.15 kB

Update manuscript link to SharedIt over 1 year ago
config.json

565 Bytes

upload Geneformer 6L-30M config over 2 years ago
pytorch_model.bin
Detected Pickle imports (4)
- "torch._utils._rebuild_tensor_v2",
- "torch.FloatStorage",
- "torch.LongStorage",
- "collections.OrderedDict"
What is a pickle import?
41.2 MB
LFS

upload Geneformer 6L-30M over 2 years ago
setup.py

637 Bytes

Add setup.py about 2 years ago
training_args.bin
Detected Pickle imports (4)
- "transformers.trainer_utils.IntervalStrategy",
- "transformers.trainer_utils.SchedulerType",
- "transformers.training_args.TrainingArguments",
- "torch.device"
How to fix it?
2.61 kB
LFS

upload training args for Geneformer 6L-30M over 2 years ago