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ctheodoris
/
Geneformer
like
199
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
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443
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47e0ef8
Geneformer
/
geneformer
14 contributors
History:
105 commits
ctheodoris
allow model_type valid options to take params model_type : {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"} (
#390
)
47e0ef8
verified
2 months ago
gene_dictionaries_30m
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
3 months ago
mtl
comment out "def save_model_without_heads(original_model_save_directory)"; redundant for ISP/Emb extractor (#382)
2 months ago
__init__.py
Safe
1.22 kB
precommit formatting
3 months ago
classifier.py
Safe
64.7 kB
precommit formatting
3 months ago
classifier_utils.py
Safe
23.3 kB
precommit formatting
3 months ago
collator_for_classification.py
Safe
31 kB
precommit formatting
3 months ago
emb_extractor.py
Safe
31.8 kB
precommit formatting
3 months ago
ensembl_mapping_dict_gc95M.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
3.96 MB
LFS
Add function for summing of Ensembl IDs (#377)
3 months ago
evaluation_utils.py
Safe
9.75 kB
precommit formatting
3 months ago
gene_median_dictionary_gc95M.pkl
pickle
Detected Pickle imports (2)
"numpy.core.multiarray.scalar"
,
"numpy.dtype"
How to fix it?
1.51 MB
LFS
Add function for summing of Ensembl IDs (#377)
3 months ago
gene_name_id_dict_gc95M.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
2.04 MB
LFS
rename for consistency
3 months ago
in_silico_perturber.py
Safe
65.5 kB
allow model_type valid options to take params model_type : {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"} (#390)
2 months ago
in_silico_perturber_stats.py
Safe
44.9 kB
precommit formatting
3 months ago
mtl_classifier.py
Safe
13.7 kB
"save_model_without_heads" is redundant (#385)
2 months ago
perturber_utils.py
Safe
33 kB
precommit formatting
3 months ago
pretrainer.py
Safe
36.6 kB
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
3 months ago
token_dictionary_gc95M.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
426 kB
LFS
update with 12L and 20L i4096 gc95M models, multitask and quantiz code
3 months ago
tokenizer.py
Safe
26.4 kB
precommit formatting
3 months ago
