Commit
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47e0ef8
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Parent(s):
4c9dda5
allow model_type valid options to take params model_type : {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"} (#390)
Browse files- allow model_type valid options to take params model_type : {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"} (f8687d834ba074caf734cf29424902e42a8a8b18)
Co-authored-by: Madhavan Venkatesh <[email protected]>
geneformer/in_silico_perturber.py
CHANGED
@@ -60,7 +60,7 @@ class InSilicoPerturber:
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"genes_to_perturb": {"all", list},
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"combos": {0, 1},
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"anchor_gene": {None, str},
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-
"model_type": {"Pretrained", "GeneClassifier", "CellClassifier"},
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"num_classes": {int},
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"emb_mode": {"cls", "cell", "cls_and_gene", "cell_and_gene"},
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"cell_emb_style": {"mean_pool"},
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"genes_to_perturb": {"all", list},
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"combos": {0, 1},
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"anchor_gene": {None, str},
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+
"model_type": {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"},
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"num_classes": {int},
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"emb_mode": {"cls", "cell", "cls_and_gene", "cell_and_gene"},
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"cell_emb_style": {"mean_pool"},
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