ctheodoris

/

Geneformer

like 199

Hello,

I have a model with just 2 classes and I tried to run the following function but get errors related to the third class either not being entered, or the function trying to calculate for a "None" value in the dictionary.

I figured a way around this by adding in the alt_state as a repeat of the goal state and commenting out lines 822:826 in in_silico_perturber_stats.py so it doesn't consider it as an error.

ispstats = InSilicoPerturberStats(mode="goal_state_shift",
                                  genes_perturbed="all",
                                  combos=0,
                                  anchor_gene=None,
                                  cell_states_to_model={'state_key':'disease',
                                              'start_state':'A',
                                              'goal_state':'B',
                                             'alt_states':['B']})