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Medicine LLM 13B - GGUF

Model creator: AdaptLLM
Original model: Medicine LLM 13B

Description

This repo contains GGUF format model files for AdaptLLM's Medicine LLM 13B.

These files were quantised using hardware kindly provided by Massed Compute.

About GGUF

GGUF is a new format introduced by the llama.cpp team on August 21st 2023. It is a replacement for GGML, which is no longer supported by llama.cpp.

Here is an incomplete list of clients and libraries that are known to support GGUF:

llama.cpp. The source project for GGUF. Offers a CLI and a server option.
text-generation-webui, the most widely used web UI, with many features and powerful extensions. Supports GPU acceleration.
KoboldCpp, a fully featured web UI, with GPU accel across all platforms and GPU architectures. Especially good for story telling.
GPT4All, a free and open source local running GUI, supporting Windows, Linux and macOS with full GPU accel.
LM Studio, an easy-to-use and powerful local GUI for Windows and macOS (Silicon), with GPU acceleration. Linux available, in beta as of 27/11/2023.
LoLLMS Web UI, a great web UI with many interesting and unique features, including a full model library for easy model selection.
Faraday.dev, an attractive and easy to use character-based chat GUI for Windows and macOS (both Silicon and Intel), with GPU acceleration.
llama-cpp-python, a Python library with GPU accel, LangChain support, and OpenAI-compatible API server.
candle, a Rust ML framework with a focus on performance, including GPU support, and ease of use.
ctransformers, a Python library with GPU accel, LangChain support, and OpenAI-compatible AI server. Note, as of time of writing (November 27th 2023), ctransformers has not been updated in a long time and does not support many recent models.

Repositories available

Prompt template: Llama-2-Chat

[INST] <<SYS>>
{system_message}
<</SYS>>
{prompt} [/INST]

Compatibility

These quantised GGUFv2 files are compatible with llama.cpp from August 27th onwards, as of commit d0cee0d

They are also compatible with many third party UIs and libraries - please see the list at the top of this README.

Explanation of quantisation methods

Click to see details

The new methods available are:

GGML_TYPE_Q2_K - "type-1" 2-bit quantization in super-blocks containing 16 blocks, each block having 16 weight. Block scales and mins are quantized with 4 bits. This ends up effectively using 2.5625 bits per weight (bpw)
GGML_TYPE_Q3_K - "type-0" 3-bit quantization in super-blocks containing 16 blocks, each block having 16 weights. Scales are quantized with 6 bits. This end up using 3.4375 bpw.
GGML_TYPE_Q4_K - "type-1" 4-bit quantization in super-blocks containing 8 blocks, each block having 32 weights. Scales and mins are quantized with 6 bits. This ends up using 4.5 bpw.
GGML_TYPE_Q5_K - "type-1" 5-bit quantization. Same super-block structure as GGML_TYPE_Q4_K resulting in 5.5 bpw
GGML_TYPE_Q6_K - "type-0" 6-bit quantization. Super-blocks with 16 blocks, each block having 16 weights. Scales are quantized with 8 bits. This ends up using 6.5625 bpw

Refer to the Provided Files table below to see what files use which methods, and how.

Provided files

Name	Quant method	Bits	Size	Max RAM required	Use case
medicine-llm-13b.Q2_K.gguf	Q2_K	2	5.43 GB	7.93 GB	smallest, significant quality loss - not recommended for most purposes
medicine-llm-13b.Q3_K_S.gguf	Q3_K_S	3	5.66 GB	8.16 GB	very small, high quality loss
medicine-llm-13b.Q3_K_M.gguf	Q3_K_M	3	6.34 GB	8.84 GB	very small, high quality loss
medicine-llm-13b.Q3_K_L.gguf	Q3_K_L	3	6.93 GB	9.43 GB	small, substantial quality loss
medicine-llm-13b.Q4_0.gguf	Q4_0	4	7.37 GB	9.87 GB	legacy; small, very high quality loss - prefer using Q3_K_M
medicine-llm-13b.Q4_K_S.gguf	Q4_K_S	4	7.41 GB	9.91 GB	small, greater quality loss
medicine-llm-13b.Q4_K_M.gguf	Q4_K_M	4	7.87 GB	10.37 GB	medium, balanced quality - recommended
medicine-llm-13b.Q5_0.gguf	Q5_0	5	8.97 GB	11.47 GB	legacy; medium, balanced quality - prefer using Q4_K_M
medicine-llm-13b.Q5_K_S.gguf	Q5_K_S	5	8.97 GB	11.47 GB	large, low quality loss - recommended
medicine-llm-13b.Q5_K_M.gguf	Q5_K_M	5	9.23 GB	11.73 GB	large, very low quality loss - recommended
medicine-llm-13b.Q6_K.gguf	Q6_K	6	10.68 GB	13.18 GB	very large, extremely low quality loss
medicine-llm-13b.Q8_0.gguf	Q8_0	8	13.83 GB	16.33 GB	very large, extremely low quality loss - not recommended

Note: the above RAM figures assume no GPU offloading. If layers are offloaded to the GPU, this will reduce RAM usage and use VRAM instead.

How to download GGUF files

Note for manual downloaders: You almost never want to clone the entire repo! Multiple different quantisation formats are provided, and most users only want to pick and download a single file.

The following clients/libraries will automatically download models for you, providing a list of available models to choose from:

LM Studio
LoLLMS Web UI
Faraday.dev

In `text-generation-webui`

Under Download Model, you can enter the model repo: TheBloke/medicine-LLM-13B-GGUF and below it, a specific filename to download, such as: medicine-llm-13b.Q4_K_M.gguf.

Then click Download.

On the command line, including multiple files at once

I recommend using the huggingface-hub Python library:

pip3 install huggingface-hub

Then you can download any individual model file to the current directory, at high speed, with a command like this:

huggingface-cli download TheBloke/medicine-LLM-13B-GGUF medicine-llm-13b.Q4_K_M.gguf --local-dir . --local-dir-use-symlinks False

More advanced huggingface-cli download usage (click to read)

You can also download multiple files at once with a pattern:

huggingface-cli download TheBloke/medicine-LLM-13B-GGUF --local-dir . --local-dir-use-symlinks False --include='*Q4_K*gguf'

For more documentation on downloading with huggingface-cli, please see: HF -> Hub Python Library -> Download files -> Download from the CLI.

To accelerate downloads on fast connections (1Gbit/s or higher), install hf_transfer:

pip3 install hf_transfer

And set environment variable HF_HUB_ENABLE_HF_TRANSFER to 1:

HF_HUB_ENABLE_HF_TRANSFER=1 huggingface-cli download TheBloke/medicine-LLM-13B-GGUF medicine-llm-13b.Q4_K_M.gguf --local-dir . --local-dir-use-symlinks False

Windows Command Line users: You can set the environment variable by running set HF_HUB_ENABLE_HF_TRANSFER=1 before the download command.

Example `llama.cpp` command

Make sure you are using llama.cpp from commit d0cee0d or later.

./main -ngl 35 -m medicine-llm-13b.Q4_K_M.gguf --color -c 2048 --temp 0.7 --repeat_penalty 1.1 -n -1 -p "[INST] <<SYS>>\n{system_message}\n<</SYS>>\n{prompt} [/INST]"

Change -ngl 32 to the number of layers to offload to GPU. Remove it if you don't have GPU acceleration.

Change -c 2048 to the desired sequence length. For extended sequence models - eg 8K, 16K, 32K - the necessary RoPE scaling parameters are read from the GGUF file and set by llama.cpp automatically. Note that longer sequence lengths require much more resources, so you may need to reduce this value.

If you want to have a chat-style conversation, replace the -p <PROMPT> argument with -i -ins

For other parameters and how to use them, please refer to the llama.cpp documentation

How to run in `text-generation-webui`

Further instructions can be found in the text-generation-webui documentation, here: text-generation-webui/docs/04 ‐ Model Tab.md.

How to run from Python code

You can use GGUF models from Python using the llama-cpp-python or ctransformers libraries. Note that at the time of writing (Nov 27th 2023), ctransformers has not been updated for some time and is not compatible with some recent models. Therefore I recommend you use llama-cpp-python.

How to load this model in Python code, using llama-cpp-python

For full documentation, please see: llama-cpp-python docs.

First install the package

Run one of the following commands, according to your system:

# Base ctransformers with no GPU acceleration
pip install llama-cpp-python
# With NVidia CUDA acceleration
CMAKE_ARGS="-DLLAMA_CUBLAS=on" pip install llama-cpp-python
# Or with OpenBLAS acceleration
CMAKE_ARGS="-DLLAMA_BLAS=ON -DLLAMA_BLAS_VENDOR=OpenBLAS" pip install llama-cpp-python
# Or with CLBLast acceleration
CMAKE_ARGS="-DLLAMA_CLBLAST=on" pip install llama-cpp-python
# Or with AMD ROCm GPU acceleration (Linux only)
CMAKE_ARGS="-DLLAMA_HIPBLAS=on" pip install llama-cpp-python
# Or with Metal GPU acceleration for macOS systems only
CMAKE_ARGS="-DLLAMA_METAL=on" pip install llama-cpp-python

# In windows, to set the variables CMAKE_ARGS in PowerShell, follow this format; eg for NVidia CUDA:
$env:CMAKE_ARGS = "-DLLAMA_OPENBLAS=on"
pip install llama-cpp-python

Simple llama-cpp-python example code

from llama_cpp import Llama

# Set gpu_layers to the number of layers to offload to GPU. Set to 0 if no GPU acceleration is available on your system.
llm = Llama(
  model_path="./medicine-llm-13b.Q4_K_M.gguf",  # Download the model file first
  n_ctx=2048,  # The max sequence length to use - note that longer sequence lengths require much more resources
  n_threads=8,            # The number of CPU threads to use, tailor to your system and the resulting performance
  n_gpu_layers=35         # The number of layers to offload to GPU, if you have GPU acceleration available
)

# Simple inference example
output = llm(
  "[INST] <<SYS>>\n{system_message}\n<</SYS>>\n{prompt} [/INST]", # Prompt
  max_tokens=512,  # Generate up to 512 tokens
  stop=["</s>"],   # Example stop token - not necessarily correct for this specific model! Please check before using.
  echo=True        # Whether to echo the prompt
)

# Chat Completion API

llm = Llama(model_path="./medicine-llm-13b.Q4_K_M.gguf", chat_format="llama-2")  # Set chat_format according to the model you are using
llm.create_chat_completion(
    messages = [
        {"role": "system", "content": "You are a story writing assistant."},
        {
            "role": "user",
            "content": "Write a story about llamas."
        }
    ]
)

How to use with LangChain

Here are guides on using llama-cpp-python and ctransformers with LangChain:

Discord

For further support, and discussions on these models and AI in general, join us at:

TheBloke AI's Discord server

Thanks, and how to contribute

Thanks to the chirper.ai team!

Thanks to Clay from gpus.llm-utils.org!

I've had a lot of people ask if they can contribute. I enjoy providing models and helping people, and would love to be able to spend even more time doing it, as well as expanding into new projects like fine tuning/training.

If you're able and willing to contribute it will be most gratefully received and will help me to keep providing more models, and to start work on new AI projects.

Donaters will get priority support on any and all AI/LLM/model questions and requests, access to a private Discord room, plus other benefits.

Patreon: https://patreon.com/TheBlokeAI
Ko-Fi: https://ko-fi.com/TheBlokeAI

Special thanks to: Aemon Algiz.

Patreon special mentions: Michael Levine, 阿明, Trailburnt, Nikolai Manek, John Detwiler, Randy H, Will Dee, Sebastain Graf, NimbleBox.ai, Eugene Pentland, Emad Mostaque, Ai Maven, Jim Angel, Jeff Scroggin, Michael Davis, Manuel Alberto Morcote, Stephen Murray, Robert, Justin Joy, Luke @flexchar, Brandon Frisco, Elijah Stavena, S_X, Dan Guido, Undi ., Komninos Chatzipapas, Shadi, theTransient, Lone Striker, Raven Klaugh, jjj, Cap'n Zoog, Michel-Marie MAUDET (LINAGORA), Matthew Berman, David, Fen Risland, Omer Bin Jawed, Luke Pendergrass, Kalila, OG, Erik Bjäreholt, Rooh Singh, Joseph William Delisle, Dan Lewis, TL, John Villwock, AzureBlack, Brad, Pedro Madruga, Caitlyn Gatomon, K, jinyuan sun, Mano Prime, Alex, Jeffrey Morgan, Alicia Loh, Illia Dulskyi, Chadd, transmissions 11, fincy, Rainer Wilmers, ReadyPlayerEmma, knownsqashed, Mandus, biorpg, Deo Leter, Brandon Phillips, SuperWojo, Sean Connelly, Iucharbius, Jack West, Harry Royden McLaughlin, Nicholas, terasurfer, Vitor Caleffi, Duane Dunston, Johann-Peter Hartmann, David Ziegler, Olakabola, Ken Nordquist, Trenton Dambrowitz, Tom X Nguyen, Vadim, Ajan Kanaga, Leonard Tan, Clay Pascal, Alexandros Triantafyllidis, JM33133, Xule, vamX, ya boyyy, subjectnull, Talal Aujan, Alps Aficionado, wassieverse, Ari Malik, James Bentley, Woland, Spencer Kim, Michael Dempsey, Fred von Graf, Elle, zynix, William Richards, Stanislav Ovsiannikov, Edmond Seymore, Jonathan Leane, Martin Kemka, usrbinkat, Enrico Ros

Thank you to all my generous patrons and donaters!

And thank you again to a16z for their generous grant.

Original model card: AdaptLLM's Medicine LLM 13B

Adapt (Large) Language Models to Domains

This repo contains the domain-specific base model developed from LLaMA-1-13B, using the method in our paper Adapting Large Language Models via Reading Comprehension.

We explore continued pre-training on domain-specific corpora for large language models. While this approach enriches LLMs with domain knowledge, it significantly hurts their prompting ability for question answering. Inspired by human learning via reading comprehension, we propose a simple method to transform large-scale pre-training corpora into reading comprehension texts, consistently improving prompting performance across tasks in biomedicine, finance, and law domains. Our 7B model competes with much larger domain-specific models like BloombergGPT-50B.

🤗 We are currently working hard on developing models across different domains, scales and architectures! Please stay tuned! 🤗

**************************** Updates ****************************

12/19: Released our 13B base models developed from LLaMA-1-13B.
12/8: Released our chat models developed from LLaMA-2-Chat-7B.
9/18: Released our paper, code, data, and base models developed from LLaMA-1-7B.

Domain-Specific LLaMA-1

LLaMA-1-7B

In our paper, we develop three domain-specific models from LLaMA-1-7B, which are also available in Huggingface: Biomedicine-LLM, Finance-LLM and Law-LLM, the performances of our AdaptLLM compared to other domain-specific LLMs are:

LLaMA-1-13B

Moreover, we scale up our base model to LLaMA-1-13B to see if our method is similarly effective for larger-scale models, and the results are consistently positive too: Biomedicine-LLM-13B, Finance-LLM-13B and Law-LLM-13B.

Domain-Specific LLaMA-2-Chat

Our method is also effective for aligned models! LLaMA-2-Chat requires a specific data format, and our reading comprehension can perfectly fit the data format by transforming the reading comprehension into a multi-turn conversation. We have also open-sourced chat models in different domains: Biomedicine-Chat, Finance-Chat and Law-Chat

For example, to chat with the biomedicine model:

from transformers import AutoModelForCausalLM, AutoTokenizer

model = AutoModelForCausalLM.from_pretrained("AdaptLLM/medicine-chat")
tokenizer = AutoTokenizer.from_pretrained("AdaptLLM/medicine-chat", use_fast=False)

# Put your input here:
user_input = '''Question: Which of the following is an example of monosomy?
Options:
- 46,XX
- 47,XXX
- 69,XYY
- 45,X

Please provide your choice first and then provide explanations if possible.'''

# We use the prompt template of LLaMA-2-Chat demo
prompt = f"<s>[INST] <<SYS>>\nYou are a helpful, respectful and honest assistant. Always answer as helpfully as possible, while being safe.  Your answers should not include any harmful, unethical, racist, sexist, toxic, dangerous, or illegal content. Please ensure that your responses are socially unbiased and positive in nature.\n\nIf a question does not make any sense, or is not factually coherent, explain why instead of answering something not correct. If you don't know the answer to a question, please don't share false information.\n<</SYS>>\n\n{user_input} [/INST]"

inputs = tokenizer(prompt, return_tensors="pt", add_special_tokens=False).input_ids.to(model.device)
outputs = model.generate(input_ids=inputs, max_length=4096)[0]

answer_start = int(inputs.shape[-1])
pred = tokenizer.decode(outputs[answer_start:], skip_special_tokens=True)

print(f'### User Input:\n{user_input}\n\n### Assistant Output:\n{pred}')

Domain-Specific Tasks

To easily reproduce our results, we have uploaded the filled-in zero/few-shot input instructions and output completions of each domain-specific task: biomedicine-tasks, finance-tasks, and law-tasks.

Note: those filled-in instructions are specifically tailored for models before alignment and do NOT fit for the specific data format required for chat models.

Citation

If you find our work helpful, please cite us:

@article{adaptllm,
  title        = {Adapting Large Language Models via Reading Comprehension},
  author       = {Daixuan Cheng and Shaohan Huang and Furu Wei},
  journal      = {CoRR},
  volume       = {abs/2309.09530},
  year         = {2023}
}

Downloads last month: 42,218

GGUF

Model size

13B params

Architecture

llama

2-bit

3-bit

4-bit

5-bit

6-bit

8-bit

Inference Examples

Text Generation

Inference API (serverless) has been turned off for this model.

Model tree for TheBloke/medicine-LLM-13B-GGUF

Base model

AdaptLLM/medicine-LLM-13B

Quantized

(5)

this model

TheBloke
/

medicine-LLM-13B-GGUF

Medicine LLM 13B - GGUF

Description

About GGUF

Repositories available

Prompt template: Llama-2-Chat

Compatibility

Explanation of quantisation methods

Provided files

How to download GGUF files

In `text-generation-webui`

On the command line, including multiple files at once

Example `llama.cpp` command

How to run in `text-generation-webui`

How to run from Python code

How to load this model in Python code, using llama-cpp-python

First install the package

Simple llama-cpp-python example code

How to use with LangChain

Discord

Thanks, and how to contribute

Original model card: AdaptLLM's Medicine LLM 13B

Adapt (Large) Language Models to Domains

🤗 We are currently working hard on developing models across different domains, scales and architectures! Please stay tuned! 🤗

Domain-Specific LLaMA-1

LLaMA-1-7B

LLaMA-1-13B

Domain-Specific LLaMA-2-Chat

Domain-Specific Tasks

Citation

Model tree for TheBloke/medicine-LLM-13B-GGUF

Datasets used to train TheBloke/medicine-LLM-13B-GGUF

Medicine LLM 13B - GGUF

Description

About GGUF

Repositories available

Prompt template: Llama-2-Chat

Compatibility

Explanation of quantisation methods

Provided files

How to download GGUF files

In text-generation-webui

On the command line, including multiple files at once

Example llama.cpp command

How to run in text-generation-webui

How to run from Python code

How to load this model in Python code, using llama-cpp-python

First install the package

Simple llama-cpp-python example code

How to use with LangChain

Discord

Thanks, and how to contribute

Original model card: AdaptLLM's Medicine LLM 13B

Adapt (Large) Language Models to Domains

🤗 We are currently working hard on developing models across different domains, scales and architectures! Please stay tuned! 🤗

Domain-Specific LLaMA-1

LLaMA-1-7B

LLaMA-1-13B

Domain-Specific LLaMA-2-Chat

Domain-Specific Tasks

Citation

Model tree for TheBloke/medicine-LLM-13B-GGUF

Datasets used to train TheBloke/medicine-LLM-13B-GGUF

In `text-generation-webui`

Example `llama.cpp` command

How to run in `text-generation-webui`