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commit from lixc
Browse files- README.md +16 -0
- config.json +26 -0
- pytorch_model.bin +3 -0
README.md
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```python
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from transformers import PreTrainedTokenizerFast, BertForMaskedLM
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tokenizer = PreTrainedTokenizerFast.from_pretrained("lixiangchun/transcriptome_iseeek_13millioncells_128tokens")
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iseeek = BertForMaskedLM.from_pretrained("lixiangchun/transcriptome_iseeek_13millioncells_128tokens")
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a = ["B2M MTRNR2L8 UBC FOS TMSB4X UBB FTH1 IFITM1 TPT1 FTL DUSP1", "KRT14 MTRNR2L8 KRT6A B2M GAPDH S100A8 S100A9 KRT5"]
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batch = tokenizer(a, max_length=128, truncation=True, padding=True, return_tensors="pt")
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out = iseeek.bert(**batch)
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# [CLS] representation
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feature = last_hidden_state[:,0,:]
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```
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config.json
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{
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"_name_or_path": "/mnt/ssd2/ai/gene_expression/bert/bert_gene_mlm",
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"architectures": [
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"BertForMaskedLM"
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],
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"attention_probs_dropout_prob": 0.1,
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"classifier_dropout": null,
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"gradient_checkpointing": false,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 576,
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"initializer_range": 0.02,
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"intermediate_size": 1536,
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 384,
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"model_type": "bert",
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"num_attention_heads": 8,
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"num_hidden_layers": 8,
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"pad_token_id": 3,
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"position_embedding_type": "absolute",
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"torch_dtype": "float32",
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"transformers_version": "4.10.0",
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"type_vocab_size": 2,
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"use_cache": true,
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"vocab_size": 20706
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}
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pytorch_model.bin
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version https://git-lfs.github.com/spec/v1
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oid sha256:fc8f82423612e372ddcd26ead16df7b2543749e7569b3d455c0e4793fe7ac548
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size 149381452
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