fix path for image loading being wrong

remove print from compute overlap

do not add out path to paths in json file

add overlap threshold for tile selection

change code to select based on study id instead of date

fix missing / when copying multiple files

add dockerignore file to avoid slowing down the build unnecessarily

add readme file to extraction folder

fix joining on wrong id

add variable to decide root of imag efilepaths and move export to outfolder instead of root dir

add gitignore file

add requirements

add possibility to run in container

add python scripts

add empty giignore to out folder so it does exists

add model to repository

add some folders to gitignore

Initial commit