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Update spaCy pipeline
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{
"lang":"en",
"name":"BiomedNER_EuropePMC",
"version":"1.0.0",
"description":"Bio Named Entity Recognition using BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext",
"author":"Santosh Tirunagari",
"email":"[email protected]",
"url":"https://europepmc.org/",
"license":"",
"spacy_version":">=3.2.4,<3.3.0",
"spacy_git_version":"b50fe5ec6",
"vectors":{
"width":0,
"vectors":0,
"keys":0,
"name":null
},
"labels":{
"transformer":[
],
"ner":[
"CD",
"DS",
"GP",
"OG"
]
},
"pipeline":[
"transformer",
"ner"
],
"components":[
"transformer",
"ner"
],
"disabled":[
],
"performance":{
"ents_f":0.8882175227,
"ents_p":0.871384947,
"ents_r":0.9057132188,
"ents_per_type":{
"DS":{
"p":0.873221216,
"r":0.8494127517,
"f":0.8611524559
},
"CD":{
"p":0.8980716253,
"r":0.9080779944,
"f":0.9030470914
},
"GP":{
"p":0.8360271726,
"r":0.908373632,
"f":0.8707001708
},
"OG":{
"p":0.9062702004,
"r":0.9463381708,
"f":0.9258708932
}
},
"transformer_loss":922.9180910581,
"ner_loss":1097.5502712241
},
"requirements":[
"spacy-transformers>=1.1.5,<1.2.0"
]
}