docker/entrypoint-rstudio.sh

#!/bin/bash --login
set -e

uid=$(id -u)
gid=$(id -g)


echo "uid $uid gid $gid "
echo "$(id )"

echo "--> Setup miniconda3"

echo ". ${HOME}miniconda3/etc/profile.d/conda.sh" >> ${HOME}/rstudio/.bashrc

echo "--> Conda activate"

# Make bash automatically activate the conda environment
echo "conda activate ${ENV_PREFIX}" >> ${HOME}/rstudio/.bashrc
#echo "export WANDB_ENTITY=${WANDB_ENTITY:-default}" >> ${HOME}/.bashrc
# echo "WANDB_ENTITY=${WANDB_ENTITY:-default}" >> ${HOME}/.Renviron

# Define an array of environment variable names from the ENV_VARS Compose variable

echo "---> Setup variables"
IFS=',' read -ra ENV_VAR_NAMES <<< "$ENV_VARS"

echo "ENV_VAR_NAMES=${ENV_VAR_NAMES[@]}"

# Loop through the array of environment variable names and set the variables
for ENV_VAR_NAME in "${ENV_VAR_NAMES[@]}"; do
  ENV_VAR_VALUE="${!ENV_VAR_NAME:-default}"
  echo "$ENV_VAR_NAME=$ENV_VAR_VALUE" >> ${HOME}/rstudio/.Renviron
done

#echo "---> Ensure ulimit"
#ulimit -s 16384

# start rstudio server
/init
echo "---> Go!"
exec "$@"