MedicalGPT-main / reward_modeling.py
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# -*- coding: utf-8 -*-
"""
@author:XuMing([email protected])
@description:
"""
import math
import os
from dataclasses import dataclass, field
from glob import glob
from typing import Any, List, Union, Optional, Dict
import torch
from datasets import load_dataset
from loguru import logger
from peft import LoraConfig, TaskType, get_peft_model, PeftModel, prepare_model_for_int8_training
from sklearn.metrics import mean_squared_error, mean_absolute_error
from torch.utils.data import Dataset
from transformers import (
AutoConfig,
PreTrainedTokenizerBase,
BloomForSequenceClassification,
LlamaForSequenceClassification,
LlamaTokenizer,
BloomTokenizerFast,
AlbertForSequenceClassification,
BertForSequenceClassification,
BertTokenizer,
AutoTokenizer,
RobertaForSequenceClassification,
AutoModelForSequenceClassification,
RobertaTokenizer,
HfArgumentParser,
Trainer,
TrainingArguments,
set_seed,
)
from transformers.trainer import TRAINING_ARGS_NAME
MODEL_CLASSES = {
"bert": (AutoConfig, BertForSequenceClassification, BertTokenizer),
"roberta": (AutoConfig, RobertaForSequenceClassification, RobertaTokenizer),
"albert": (AutoConfig, AlbertForSequenceClassification, AutoTokenizer),
"bloom": (AutoConfig, BloomForSequenceClassification, BloomTokenizerFast),
"llama": (AutoConfig, LlamaForSequenceClassification, LlamaTokenizer),
"auto": (AutoConfig, AutoModelForSequenceClassification, AutoTokenizer),
}
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_type: str = field(
default=None,
metadata={"help": "Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys())}
)
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization.Don't set if you want to train a model from scratch."
)
},
)
tokenizer_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The tokenizer for weights initialization.Don't set if you want to train a model from scratch."
)
},
)
load_in_8bit: bool = field(default=False, metadata={"help": "Whether to load the model in 8bit mode or not."})
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
use_fast_tokenizer: bool = field(
default=False,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
torch_dtype: Optional[str] = field(
default=None,
metadata={
"help": (
"Override the default `torch.dtype` and load the model under this dtype. If `auto` is passed, the "
"dtype will be automatically derived from the model's weights."
),
"choices": ["auto", "bfloat16", "float16", "float32"],
},
)
device_map: Optional[str] = field(
default="auto",
metadata={"help": "Device to map model to. If `auto` is passed, the device will be selected automatically. "},
)
trust_remote_code: bool = field(
default=True,
metadata={"help": "Whether to trust remote code when loading a model from a remote checkpoint."},
)
def __post_init__(self):
if self.model_type is None:
raise ValueError(
"You must specify a valid model_type to run training. Available model types are " + ", ".join(
MODEL_CLASSES.keys()))
if self.model_name_or_path is None:
raise ValueError("You must specify a valid model_name_or_path to run training.")
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file_dir: Optional[str] = field(default=None, metadata={"help": "The input jsonl data file folder."})
validation_file_dir: Optional[str] = field(default=None, metadata={"help": "The evaluation jsonl file folder."}, )
max_source_length: Optional[int] = field(default=256, metadata={"help": "Max length of prompt input text"})
max_target_length: Optional[int] = field(default=256, metadata={"help": "Max length of output text"})
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
validation_split_percentage: Optional[int] = field(
default=1,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
preprocessing_num_workers: Optional[int] = field(
default=4,
metadata={"help": "The number of processes to use for the preprocessing."},
)
@dataclass
class PeftArguments(TrainingArguments):
use_peft: bool = field(default=True, metadata={"help": "Whether to use peft"})
target_modules: Optional[str] = field(default="all")
lora_rank: Optional[int] = field(default=8)
lora_dropout: Optional[float] = field(default=0.05)
lora_alpha: Optional[float] = field(default=32.0)
modules_to_save: Optional[str] = field(default=None)
peft_path: Optional[str] = field(default=None)
def compute_metrics(eval_preds):
preds, labels = eval_preds
# Here, predictions is rewards_chosen and rewards_rejected.
if isinstance(preds, torch.Tensor):
preds = preds.detach().cpu().numpy()
if isinstance(labels, torch.Tensor):
labels = labels.detach().cpu().numpy()
# MSE
mse = mean_squared_error(labels, preds)
# MAE
mae = mean_absolute_error(labels, preds)
return {"mse": mse, "mae": mae}
@dataclass
class RewardDataCollatorWithPadding:
"""We need to define a special data collator that batches the data in our chosen vs rejected format"""
tokenizer: PreTrainedTokenizerBase
padding: Union[bool, str] = True
max_length: Optional[int] = None
pad_to_multiple_of: Optional[int] = None
return_tensors: str = "pt"
def __call__(self, features: List[Dict[str, Any]]) -> Dict[str, Any]:
features_chosen = []
features_rejected = []
for feature in features:
features_chosen.append(
{
"input_ids": feature["input_ids_chosen"],
"attention_mask": feature["attention_mask_chosen"],
}
)
features_rejected.append(
{
"input_ids": feature["input_ids_rejected"],
"attention_mask": feature["attention_mask_rejected"],
}
)
batch_chosen = self.tokenizer.pad(
features_chosen,
padding=self.padding,
max_length=self.max_length,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors=self.return_tensors,
)
batch_rejected = self.tokenizer.pad(
features_rejected,
padding=self.padding,
max_length=self.max_length,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors=self.return_tensors,
)
batch = {
"input_ids_chosen": batch_chosen["input_ids"],
"attention_mask_chosen": batch_chosen["attention_mask"],
"input_ids_rejected": batch_rejected["input_ids"],
"attention_mask_rejected": batch_rejected["attention_mask"],
"return_loss": True,
}
return batch
class RewardTrainer(Trainer):
"""
Trainer for reward models
Define how to compute the reward loss. Use the InstructGPT pairwise logloss: https://arxiv.org/abs/2203.02155
"""
def compute_loss(self, model, inputs, return_outputs=False):
rewards_chosen = model(input_ids=inputs["input_ids_chosen"],
attention_mask=inputs["attention_mask_chosen"])[0]
rewards_rejected = model(input_ids=inputs["input_ids_rejected"],
attention_mask=inputs["attention_mask_rejected"])[0]
loss = -torch.nn.functional.logsigmoid(rewards_chosen - rewards_rejected).mean()
if return_outputs:
return loss, {"rewards_chosen": rewards_chosen, "rewards_rejected": rewards_rejected}
return loss
def evaluate(
self,
eval_dataset: Optional[Dataset] = None,
ignore_keys: Optional[List[str]] = None,
metric_key_prefix: str = "eval",
) -> Dict[str, float]:
if eval_dataset is None:
eval_dataset = self.eval_dataset
return super().evaluate(eval_dataset=eval_dataset, ignore_keys=ignore_keys, metric_key_prefix=metric_key_prefix)
def prediction_step(self, model, inputs, prediction_loss_only, ignore_keys=None):
# Prepare inputs for chosen and rejected separately
device = model.device
inputs_chosen = {
"input_ids": inputs["input_ids_chosen"].to(device),
"attention_mask": inputs["attention_mask_chosen"].to(device),
}
outputs_chosen = model(**inputs_chosen)
rewards_chosen = outputs_chosen.logits.detach()
inputs_rejected = {
"input_ids": inputs["input_ids_rejected"].to(device),
"attention_mask": inputs["attention_mask_rejected"].to(device),
}
outputs_rejected = model(**inputs_rejected)
rewards_rejected = outputs_rejected.logits.detach()
# Keep the compute_loss method
loss = -torch.nn.functional.logsigmoid(rewards_chosen - rewards_rejected).mean()
if prediction_loss_only:
return (loss, None, None)
return (loss, rewards_chosen, rewards_rejected)
def save_model(self, output_dir=None, _internal_call=False):
"""Save the LoRA model."""
os.makedirs(output_dir, exist_ok=True)
torch.save(self.args, os.path.join(output_dir, TRAINING_ARGS_NAME))
self.model.save_pretrained(output_dir)
def save_model(output_dir, model, tokenizer, args):
"""Save the model and the tokenizer."""
os.makedirs(output_dir, exist_ok=True)
# Take care of distributed/parallel training
model_to_save = model.module if hasattr(model, "module") else model
model_to_save.save_pretrained(output_dir)
tokenizer.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, TRAINING_ARGS_NAME))
class CastOutputToFloat(torch.nn.Sequential):
"""Cast the output of the model to float"""
def forward(self, x):
return super().forward(x).to(torch.float32)
def print_trainable_parameters(model):
"""
Prints the number of trainable parameters in the model.
"""
trainable_params = 0
all_param = 0
for _, param in model.named_parameters():
all_param += param.numel()
if param.requires_grad:
trainable_params += param.numel()
print(
f"trainable params: {trainable_params} || all params: {all_param} || trainable%: {100 * trainable_params / all_param}"
)
def find_all_linear_names(peft_model, int4=False, int8=False):
cls = torch.nn.Linear
if int4 or int8:
import bitsandbytes as bnb
if int4:
cls = bnb.nn.Linear4bit
elif int8:
cls = bnb.nn.Linear8bitLt
lora_module_names = set()
for name, module in peft_model.named_modules():
if isinstance(module, cls):
# last layer is not add to lora_module_names
if 'lm_head' in name:
continue
if 'score' in name:
continue
names = name.split('.')
lora_module_names.add(names[0] if len(names) == 1 else names[-1])
return sorted(lora_module_names)
def main():
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, PeftArguments))
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
logger.info(f"Model args: {model_args}")
logger.info(f"Data args: {data_args}")
logger.info(f"Training args: {training_args}")
logger.info(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f" distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set seed before initializing model.
set_seed(training_args.seed)
# Load model
if not model_args.model_type:
raise ValueError("Please specify a model_type, e.g. llama, chatglm, bloom, etc.")
config_class, model_class, tokenizer_class = MODEL_CLASSES[model_args.model_type]
if model_args.model_name_or_path:
torch_dtype = (
model_args.torch_dtype
if model_args.torch_dtype in ["auto", None]
else getattr(torch, model_args.torch_dtype)
)
world_size = int(os.environ.get("WORLD_SIZE", 1))
if world_size > 1:
model_args.device_map = {"": int(os.environ["LOCAL_RANK"]) or 0}
config = config_class.from_pretrained(
model_args.model_name_or_path,
num_labels=1,
torch_dtype=torch_dtype,
trust_remote_code=model_args.trust_remote_code,
cache_dir=model_args.cache_dir
)
if model_args.model_type in ['bloom', 'llama']:
model = model_class.from_pretrained(
model_args.model_name_or_path,
config=config,
load_in_8bit=model_args.load_in_8bit,
device_map=model_args.device_map,
trust_remote_code=model_args.trust_remote_code,
)
model.score = CastOutputToFloat(model.score)
else:
model = model_class.from_pretrained(
model_args.model_name_or_path,
config=config,
cache_dir=model_args.cache_dir,
ignore_mismatched_sizes=True
)
model.to(training_args.device)
else:
raise ValueError(f"Error, model_name_or_path is None, RM must be loaded from a pre-trained model")
# Load tokenizer
if model_args.model_type == "bloom":
model_args.use_fast_tokenizer = True
tokenizer_kwargs = {
"cache_dir": model_args.cache_dir,
"use_fast": model_args.use_fast_tokenizer,
"trust_remote_code": model_args.trust_remote_code,
}
tokenizer_name_or_path = model_args.tokenizer_name_or_path
if not tokenizer_name_or_path:
tokenizer_name_or_path = model_args.model_name_or_path
tokenizer = tokenizer_class.from_pretrained(tokenizer_name_or_path, **tokenizer_kwargs)
if tokenizer.pad_token_id is None:
tokenizer.pad_token_id = 0
if training_args.use_peft:
if training_args.peft_path is not None:
logger.info(f"Peft from pre-trained model: {training_args.peft_path}")
model = PeftModel.from_pretrained(model, training_args.peft_path, is_trainable=True)
else:
logger.info("Init new peft model")
target_modules = training_args.target_modules.split(',') if training_args.target_modules else None
if target_modules and 'all' in target_modules:
target_modules = find_all_linear_names(model, int4=False, int8=model_args.load_in_8bit)
modules_to_save = training_args.modules_to_save
if modules_to_save is not None:
modules_to_save = modules_to_save.split(',')
logger.info(f"Peft target_modules: {target_modules}")
logger.info(f"Peft lora_rank: {training_args.lora_rank}")
peft_config = LoraConfig(
task_type=TaskType.SEQ_CLS,
target_modules=target_modules,
inference_mode=False,
r=training_args.lora_rank,
lora_alpha=training_args.lora_alpha,
lora_dropout=training_args.lora_dropout,
modules_to_save=modules_to_save)
model = get_peft_model(model, peft_config)
if model_args.load_in_8bit:
model = prepare_model_for_int8_training(model)
model.print_trainable_parameters()
else:
logger.info("Full parameters training")
print_trainable_parameters(model)
# Get reward dataset for tuning the reward model.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
raw_datasets = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
)
if "validation" not in raw_datasets.keys():
raw_datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
)
raw_datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
)
else:
data_files = {}
if data_args.train_file_dir is not None and os.path.exists(data_args.train_file_dir):
train_data_files = glob(f'{data_args.train_file_dir}/**/*.json', recursive=True) + glob(
f'{data_args.train_file_dir}/**/*.jsonl', recursive=True)
logger.info(f"train files: {', '.join(train_data_files)}")
data_files["train"] = train_data_files
if data_args.validation_file_dir is not None and os.path.exists(data_args.validation_file_dir):
eval_data_files = glob(f'{data_args.validation_file_dir}/**/*.json', recursive=True) + glob(
f'{data_args.validation_file_dir}/**/*.jsonl', recursive=True)
logger.info(f"eval files: {', '.join(eval_data_files)}")
data_files["validation"] = eval_data_files
raw_datasets = load_dataset(
'json',
data_files=data_files,
cache_dir=model_args.cache_dir,
)
# If no validation data is there, validation_split_percentage will be used to divide the dataset.
if "validation" not in raw_datasets.keys():
raw_datasets["validation"] = load_dataset(
'json',
data_files=data_files,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
)
raw_datasets["train"] = load_dataset(
'json',
data_files=data_files,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
)
logger.info(f"Raw datasets: {raw_datasets}")
# Preprocessing the datasets
full_max_length = data_args.max_source_length + data_args.max_target_length
def preprocess_reward_function(examples):
"""
Turn the dataset into pairs of Question + Answer, where input_ids_chosen is the preferred question + answer
and text_rejected is the other.
"""
new_examples = {
"input_ids_chosen": [],
"attention_mask_chosen": [],
"input_ids_rejected": [],
"attention_mask_rejected": [],
}
for question, chosen, rejected in zip(examples["question"], examples["response_chosen"],
examples["response_rejected"]):
tokenized_chosen = tokenizer("Question: " + question + "\n\nAnswer: " + chosen)
tokenized_rejected = tokenizer("Question: " + question + "\n\nAnswer: " + rejected)
new_examples["input_ids_chosen"].append(tokenized_chosen["input_ids"])
new_examples["attention_mask_chosen"].append(tokenized_chosen["attention_mask"])
new_examples["input_ids_rejected"].append(tokenized_rejected["input_ids"])
new_examples["attention_mask_rejected"].append(tokenized_rejected["attention_mask"])
return new_examples
train_dataset = None
max_train_samples = 0
if training_args.do_train:
if "train" not in raw_datasets:
raise ValueError("--do_train requires a train dataset")
train_dataset = raw_datasets['train']
max_train_samples = len(train_dataset)
if data_args.max_train_samples is not None and data_args.max_train_samples > 0:
max_train_samples = min(len(train_dataset), data_args.max_train_samples)
train_dataset = train_dataset.select(range(max_train_samples))
logger.debug(f"Example train_dataset[0]: {train_dataset[0]}")
with training_args.main_process_first(desc="Train dataset tokenization"):
tokenized_dataset = train_dataset.shuffle().map(
preprocess_reward_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=train_dataset.column_names,
load_from_cache_file=not data_args.overwrite_cache,
desc="Running tokenizer on dataset",
)
train_dataset = tokenized_dataset.filter(
lambda x: 0 < len(x['input_ids_rejected']) <= full_max_length and 0 < len(
x['input_ids_chosen']) <= full_max_length
)
logger.debug(f"Num train_samples: {len(train_dataset)}")
logger.debug("Tokenized training example:")
logger.debug(tokenizer.decode(train_dataset[0]['input_ids_chosen']))
eval_dataset = None
max_eval_samples = 0
if training_args.do_eval:
with training_args.main_process_first(desc="Eval dataset tokenization"):
if "validation" not in raw_datasets:
raise ValueError("--do_eval requires a validation dataset")
eval_dataset = raw_datasets["validation"]
max_eval_samples = len(eval_dataset)
if data_args.max_eval_samples is not None and data_args.max_eval_samples > 0:
max_eval_samples = min(len(eval_dataset), data_args.max_eval_samples)
eval_dataset = eval_dataset.select(range(max_eval_samples))
logger.debug(f"Example eval_dataset[0]: {eval_dataset[0]}")
tokenized_dataset = eval_dataset.map(
preprocess_reward_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=eval_dataset.column_names,
load_from_cache_file=not data_args.overwrite_cache,
desc="Running tokenizer on dataset",
)
eval_dataset = tokenized_dataset.filter(
lambda x: 0 < len(x['input_ids_rejected']) <= full_max_length and 0 < len(
x['input_ids_chosen']) <= full_max_length
)
logger.debug(f"Num eval_samples: {len(eval_dataset)}")
logger.debug("Tokenized eval example:")
logger.debug(tokenizer.decode(eval_dataset[0]['input_ids_chosen']))
# Initialize our Trainer
if training_args.gradient_checkpointing:
model.gradient_checkpointing_enable()
model.config.use_cache = False
else:
model.config.use_cache = True
model.enable_input_require_grads()
if torch.cuda.device_count() > 1:
# Keeps Trainer from trying its own DataParallelism when more than 1 gpu is available
model.is_parallelizable = True
model.model_parallel = True
trainer = RewardTrainer(
model=model,
args=training_args,
train_dataset=train_dataset if training_args.do_train else None,
eval_dataset=eval_dataset if training_args.do_eval else None,
tokenizer=tokenizer,
compute_metrics=compute_metrics,
data_collator=RewardDataCollatorWithPadding(
tokenizer=tokenizer, max_length=full_max_length, padding="max_length"
),
)
# Training
if training_args.do_train:
logger.info("*** Train ***")
logger.debug(f"Train dataloader example: {next(iter(trainer.get_train_dataloader()))}")
checkpoint = None
if training_args.resume_from_checkpoint is not None:
checkpoint = training_args.resume_from_checkpoint
train_result = trainer.train(resume_from_checkpoint=checkpoint)
metrics = train_result.metrics
metrics["train_samples"] = max_train_samples
logger.debug(f"Training metrics: {metrics}")
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
logger.info(f"Saving model checkpoint to {training_args.output_dir}")
save_model(training_args.output_dir, model, tokenizer, training_args)
# Evaluation
if training_args.do_eval and trainer.is_world_process_zero():
logger.info("*** Evaluate ***")
metrics = trainer.evaluate()
metrics["eval_samples"] = max_eval_samples
try:
perplexity = math.exp(metrics["eval_loss"])
except OverflowError:
perplexity = float("inf")
metrics["perplexity"] = perplexity
logger.debug(f"Eval metrics: {metrics}")
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
if __name__ == "__main__":
main()