wzkariampuzha commited on
Commit
5a9de0e
·
1 Parent(s): d0df4c3

Update epi_pipeline.py

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Files changed (1) hide show
  1. epi_pipeline.py +3 -3
epi_pipeline.py CHANGED
@@ -231,13 +231,13 @@ import spacy
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  import json
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  class Classify_Pipeline:
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- def __init__(self,model:str='LSTM_RNN_Model'):
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  #Load spaCy models
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  self.nlp = spacy.load('en_core_web_lg')
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  self.nlpSci = spacy.load("en_ner_bc5cdr_md")
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  self.nlpSci2 = spacy.load('en_ner_bionlp13cg_md')
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  # load the tokenizer
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- with open('tokenizer.json') as f:
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  self.classify_tokenizer = tokenizer_from_json(json.load(f))
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  #OLD Code - used pickle which is unsafe
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  #with open(model+'/tokenizer.pickle', 'rb') as handle:
@@ -247,7 +247,7 @@ class Classify_Pipeline:
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  # but can also be run on any other tf.keras model
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  # load the model
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- self.classify_model = tf.keras.models.load_model(model)
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  # for preprocessing
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  from nltk.corpus import stopwords
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  self.STOPWORDS = set(stopwords.words('english'))
 
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  import json
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  class Classify_Pipeline:
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+ def __init__(self,model_name:str='LSTM_RNN_Model'):
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  #Load spaCy models
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  self.nlp = spacy.load('en_core_web_lg')
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  self.nlpSci = spacy.load("en_ner_bc5cdr_md")
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  self.nlpSci2 = spacy.load('en_ner_bionlp13cg_md')
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  # load the tokenizer
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+ with open(model_name+'/tokenizer.json') as f:
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  self.classify_tokenizer = tokenizer_from_json(json.load(f))
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  #OLD Code - used pickle which is unsafe
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  #with open(model+'/tokenizer.pickle', 'rb') as handle:
 
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  # but can also be run on any other tf.keras model
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  # load the model
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+ self.classify_model = tf.keras.models.load_model(model_name)
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  # for preprocessing
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  from nltk.corpus import stopwords
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  self.STOPWORDS = set(stopwords.words('english'))