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Runtime error
xuyingli
commited on
Commit
·
44a92c5
1
Parent(s):
9a88d36
Update app.py
Browse files
app.py
CHANGED
@@ -327,7 +327,7 @@ if 'xq' not in st.session_state:
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expander.text("""Contact prediction is based on a logistic regression over the model's attention maps. \
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This methodology is based on ICLR 2021 paper, Transformer protein language models are unsupervised structure learners.
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(Rao et al. 2020) The MSA Transformer (ESM-MSA-1) takes a multiple sequence alignment (MSA) as input, and uses the tied row self-attention maps in the same way.""")
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st.session_state['xq'] = model
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elif option == function_list[1]:
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sequence = st.text_input('protein sequence', '')
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st.write('Try an example:')
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@@ -353,7 +353,7 @@ if 'xq' not in st.session_state:
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print(result_temp_seq[4])
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start[2] = st.pyplot(visualize_3D_Coordinates(result_temp_coords).figure)
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st.session_state['xq'] = model
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elif option == function_list[2]:
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st.text('we predict the biological activity of mutations of a protein, using fixed embeddings from ESM.')
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sequence = st.text_input('protein sequence', '')
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@@ -370,7 +370,7 @@ if 'xq' not in st.session_state:
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start[3] = showmol(render_pdb_resn(viewer = render_pdb(id = id_PDB),resn_lst = [residues_marker]))
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else:
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start[3] = showmol(render_pdb(id = id_PDB))
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-
st.session_state['xq'] = model
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else:
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if st.session_state.query_num < len(messages):
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expander.text("""Contact prediction is based on a logistic regression over the model's attention maps. \
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This methodology is based on ICLR 2021 paper, Transformer protein language models are unsupervised structure learners.
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(Rao et al. 2020) The MSA Transformer (ESM-MSA-1) takes a multiple sequence alignment (MSA) as input, and uses the tied row self-attention maps in the same way.""")
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+
st.session_state['xq'] = st.session_state.model
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elif option == function_list[1]:
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sequence = st.text_input('protein sequence', '')
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st.write('Try an example:')
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print(result_temp_seq[4])
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start[2] = st.pyplot(visualize_3D_Coordinates(result_temp_coords).figure)
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+
st.session_state['xq'] = st.session_state.model
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elif option == function_list[2]:
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st.text('we predict the biological activity of mutations of a protein, using fixed embeddings from ESM.')
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sequence = st.text_input('protein sequence', '')
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start[3] = showmol(render_pdb_resn(viewer = render_pdb(id = id_PDB),resn_lst = [residues_marker]))
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else:
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start[3] = showmol(render_pdb(id = id_PDB))
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+
st.session_state['xq'] = st.session_state.model
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else:
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if st.session_state.query_num < len(messages):
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