hug

README.md

@@ -4,12 +4,14 @@ emoji: 🔬
 colorFrom: yellow
 colorTo: purple
 sdk: streamlit
-sdk_version: 1.10.0
+sdk_version: 1.19.0
 app_file: Home.py
-pinned: true
 license: agpl-3.0
+python: 3.10.9
 ---
 
+![Twitter Follow](https://img.shields.io/twitter/follow/corentinm_py?style=social) ![Demo Version](https://img.shields.io/badge/Demo-https%3A%2F%2Flbgi.fr%2FMyoQuant%2F-9cf) ![PyPi](https://img.shields.io/badge/PyPi-https%3A%2F%2Fpypi.org%2Fproject%2Fmyoquant%2F-blueviolet) ![Pypi verison](https://img.shields.io/pypi/v/myoquant)
+
 # MyoQuant-Streamlit🔬: a demo web interface for the MyoQuant tool.
 
 ## Please refer to the [MyoQuant GitHub Repository](https://github.com/lambda-science/MyoQuant) or the [MyoQuant PyPi repository](https://pypi.org/project/myoquant/) for full documentation.

google_colab_deploy.ipynb

@@ -0,0 +1,66 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "!pip install -q streamlit\n",
+    "!pip install -q pyngrok\n",
+    "!pip install -q cellpose\n",
+    "!pip install -q stardist\n",
+    "!pip install -q imageio"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from pyngrok import ngrok \n",
+    "public_url = ngrok.connect(port='8501')\n",
+    "# public_url"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "!git clone https://github.com/lambda-science/MyoQuant.git app\n",
+    "!wget https://lbgi.fr/~meyer/SDH_models/model.h5"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "!streamlit run /content/app/Home.py & npx localtunnel --port 8501"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3.8.10 64-bit",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "name": "python",
+   "version": "3.8.10"
+  },
+  "orig_nbformat": 4,
+  "vscode": {
+   "interpreter": {
+    "hash": "31f2aee4e71d21fbe5cf8b01ff0e069b9275f58929596ceb00d14d90e3e16cd6"
+   }
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}

requirements.txt

@@ -1,4 +1,7 @@
 myoquant
+streamlit
+pyngrok
 imageio
 pandas
-matplotlib
+matplotlib
+ipykernel

start.sh

@@ -0,0 +1,11 @@
+#!/bin/bash
+source .venv/bin/activate
+DIR=$(readlink -f $0 | xargs dirname)
+PIDPATH=$DIR/.pid
+
+if [ -f $PIDPATH ]; then
+	kill $(cat $PIDPATH)
+fi
+
+nohup streamlit run Home.py --server.baseUrlPath /MyoQuant --browser.serverAddress lbgi.fr --server.fileWatcherType none --browser.gatherUsageStats false --server.port 8501 --logger.level warning > log 2>&1 &
+echo $! > $DIR/pid