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README.md
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@@ -11,11 +11,20 @@ The figure shows a predicted liver mask with the corresponding patient CT in 3DS
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The LITS dataset can be accessible from [here](https://competitions.codalab.org), and the corresponding paper for the challenge (Bilic. P et al.. (2019). The Liver Tumor Segmentation Benchmark (LiTS). https://arxiv.org/abs/1901.04056). If trained model is used please cite this paper.
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### Usage:
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```
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git clone https://github.com/andreped/livermask.git
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cd livermask
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-
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cd livermask
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python livermask.py "path_to_ct_nifti.nii" "output_name.nii"
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```
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The LITS dataset can be accessible from [here](https://competitions.codalab.org), and the corresponding paper for the challenge (Bilic. P et al.. (2019). The Liver Tumor Segmentation Benchmark (LiTS). https://arxiv.org/abs/1901.04056). If trained model is used please cite this paper.
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### Usage:
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1) Clone repo:
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```
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git clone https://github.com/andreped/livermask.git
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cd livermask
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```
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2) Create virtual environment and intall dependencies:
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```
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virtualenv -ppython3 venv
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source venv/bin/activate
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pip install -r /path/to/requirements.txt
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```
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3) Run livermask method:
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```
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cd livermask
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python livermask.py "path_to_ct_nifti.nii" "output_name.nii"
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```
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