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name: Build |
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on: |
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push: |
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branches: |
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- "*" |
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pull_request: |
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branches: |
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- "*" |
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workflow_dispatch: |
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jobs: |
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build: |
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runs-on: ubuntu-20.04 |
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steps: |
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- uses: actions/checkout@v1 |
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- name: Set up Python 3.7 |
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uses: actions/setup-python@v2 |
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with: |
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python-version: 3.7 |
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- name: Install dependencies |
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run: pip install wheel setuptools |
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- name: Build wheel |
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run: python setup.py bdist_wheel --universal |
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- name: Upload Python wheel |
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uses: actions/upload-artifact@v2 |
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with: |
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name: Python wheel |
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path: ${{github.workspace}}/dist/livermask-*.whl |
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if-no-files-found: error |
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test: |
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needs: build |
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runs-on: ${{ matrix.os }} |
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strategy: |
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matrix: |
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os: [ windows-2019, ubuntu-20.04, macos-11 ] |
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python-version: [ 3.7 ] |
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steps: |
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- uses: actions/checkout@v1 |
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- name: Set up Python ${{ matrix.python-version }} |
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uses: actions/setup-python@v2 |
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with: |
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python-version: ${{ matrix.python-version }} |
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- name: Download artifact |
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uses: actions/download-artifact@master |
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with: |
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name: "Python wheel" |
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- name: Install wheel |
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if: runner.os == 'Windows' |
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run: | |
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$TARGET = Resolve-Path "${{github.workspace}}/livermask-*.whl" | Select -ExpandProperty Path |
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echo $TARGET |
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pip install --find-links=${{github.workspace}} $TARGET |
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- name: Install wheel |
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if: runner.os != 'Windows' |
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run: pip install --find-links=${{github.workspace}} livermask-*.whl |
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- name: Test CLI |
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run: livermask --help |
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- name: Download test sample |
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run: | |
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pip install gdown==4.4.0 |
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mkdir samples |
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mkdir results |
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cd samples |
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gdown https://drive.google.com/uc?id=1shjSrFjS4PHE5sTku30PZTLPZpGu24o3 |
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gdown https://drive.google.com/uc?id=1bNmls5o0Rxw5HvBF1IYnEzmpysYJaywN |
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- name: Test inference .nii |
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run: | |
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livermask --input samples --output results --verbose --vessels |
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