Commit
·
9fc7496
1
Parent(s):
8cfcefe
Fixed reporting
Browse files
notebooks/protac_degradation_predictor.py
CHANGED
@@ -6,6 +6,7 @@ from collections import defaultdict
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from typing import Literal, List, Tuple, Optional
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import urllib.request
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import optuna
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from optuna.samplers import TPESampler
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import h5py
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@@ -754,6 +755,7 @@ def hyperparameter_tuning_and_training(
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logger_name: str = 'protac_hparam_search',
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active_label: str = 'Active',
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disabled_embeddings: List[str] = [],
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) -> tuple:
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""" Hyperparameter tuning and training of a PROTAC model.
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@@ -797,6 +799,9 @@ def hyperparameter_tuning_and_training(
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n_trials=n_trials,
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)
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# Retrain the model with the best hyperparameters
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model, trainer, metrics = train_model(
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train_df,
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@@ -833,7 +838,7 @@ def main(
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fast_dev_run (bool): Whether to run a fast development run.
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"""
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## Set the Column to Predict
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-
active_name = active_col.replace(' ', '_').
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# Get Dmax_threshold from the active_col
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Dmax_threshold = float(active_col.split('Dmax')[1].split(',')[0].strip('(').strip(')').strip())
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@@ -987,18 +992,21 @@ def main(
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stats = {
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'fold': k,
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'train_len': len(train_df),
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'val_len': len(val_df),
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'train_perc': len(train_df) / len(train_val_df),
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'val_perc': len(val_df) / len(train_val_df),
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-
'
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-
'
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-
'
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-
'
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'num_leaking_uniprot': len(leaking_uniprot),
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'num_leaking_smiles': len(leaking_smiles),
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-
'
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'
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}
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if split_type != 'random':
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stats['train_unique_groups'] = len(np.unique(group[train_index]))
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@@ -1012,8 +1020,9 @@ def main(
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test_df,
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fast_dev_run=fast_dev_run,
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n_trials=n_trials,
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-
logger_name=f'protac_{active_name}_{split_type}_fold_{k}',
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active_label=active_col,
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)
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hparams = {p.strip('hparam_'): v for p, v in stats.items() if p.startswith('hparam_')}
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stats.update(metrics)
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from typing import Literal, List, Tuple, Optional
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import urllib.request
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+
import joblib
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import optuna
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from optuna.samplers import TPESampler
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import h5py
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logger_name: str = 'protac_hparam_search',
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active_label: str = 'Active',
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disabled_embeddings: List[str] = [],
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+
study_filename: Optional[str] = None,
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) -> tuple:
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""" Hyperparameter tuning and training of a PROTAC model.
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n_trials=n_trials,
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)
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+
if study_filename:
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joblib.dump(study, study_filename)
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+
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# Retrain the model with the best hyperparameters
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model, trainer, metrics = train_model(
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train_df,
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fast_dev_run (bool): Whether to run a fast development run.
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"""
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## Set the Column to Predict
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+
active_name = active_col.replace(' ', '_').replace('(', '').replace(')', '').replace(',', '')
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# Get Dmax_threshold from the active_col
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Dmax_threshold = float(active_col.split('Dmax')[1].split(',')[0].strip('(').strip(')').strip())
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stats = {
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'fold': k,
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+
'split_type': split_type,
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'train_len': len(train_df),
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'val_len': len(val_df),
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'train_perc': len(train_df) / len(train_val_df),
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'val_perc': len(val_df) / len(train_val_df),
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+
'train_active_perc': train_df[active_col].sum() / len(train_df) * 100,
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+
'train_inactive_perc': (len(train_df) - train_df[active_col].sum()) / len(train_df) * 100,
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'val_active_perc': val_df[active_col].sum() / len(val_df) * 100,
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'val_inactive_perc': (len(val_df) - val_df[active_col].sum()) / len(val_df) * 100,
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'test_active_perc': test_df[active_col].sum() / len(test_df),
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'test_inactive_perc': (len(test_df) - test_df[active_col].sum()) / len(test_df),
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'num_leaking_uniprot': len(leaking_uniprot),
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'num_leaking_smiles': len(leaking_smiles),
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'train_leaking_uniprot_perc': len(train_df[train_df['Uniprot'].isin(leaking_uniprot)]) / len(train_df) * 100,
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'train_leaking_smiles_perc': len(train_df[train_df['Smiles'].isin(leaking_smiles)]) / len(train_df) * 100,
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}
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if split_type != 'random':
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stats['train_unique_groups'] = len(np.unique(group[train_index]))
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test_df,
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fast_dev_run=fast_dev_run,
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n_trials=n_trials,
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+
logger_name=f'protac_{active_name}_{split_type}_fold_{k}_test_split_{test_split}',
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active_label=active_col,
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+
study_filename=f'../reports/study_{active_name}_{split_type}_fold_{k}_test_split_{test_split}.pkl',
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)
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hparams = {p.strip('hparam_'): v for p, v in stats.items() if p.startswith('hparam_')}
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stats.update(metrics)
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reports/cv_report_hparam_search_5-splits_Active_Dmax_0.6_pDC50_6.0_test_split_0.1.csv
CHANGED
@@ -1,36 +1,36 @@
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-
fold,train_len,val_len,train_perc,val_perc,
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-
0,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0,35,0.0,10.357142857142858,24,10,0.
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-
0,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0,35,0.0,10.357142857142858,24,10,0.
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-
0,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0,35,0.0,10.357142857142858,24,10,0.
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-
0,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0,35,0.0,10.357142857142858,24,10,0.
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-
0,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0,35,0.0,10.357142857142858,24,10,0.
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-
0,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0,35,0.0,10.357142857142858,24,10,0.
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8 |
-
0,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0,35,0.0,10.357142857142858,24,10,0.
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-
1,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0,28,0.0,6.698564593301436,27,7,0.
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-
1,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0,28,0.0,6.698564593301436,27,7,0.
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-
1,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0,28,0.0,6.698564593301436,27,7,0.
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-
1,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0,28,0.0,6.698564593301436,27,7,0.
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-
1,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0,28,0.0,6.698564593301436,27,7,0.
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1,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0,28,0.0,6.698564593301436,27,7,0.
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-
1,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0,28,0.0,6.698564593301436,27,7,0.
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2,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0,0,0.0,0.0,28,6,0.
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2,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0,0,0.0,0.0,28,6,0.
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-
2,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0,0,0.0,0.0,28,6,0.
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-
2,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0,0,0.0,0.0,28,6,0.
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2,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0,0,0.0,0.0,28,6,0.
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2,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0,0,0.0,0.0,28,6,0.
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2,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0,0,0.0,0.0,28,6,0.
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3,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0,8,0.0,4.029304029304029,27,7,0.
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3,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0,8,0.0,4.029304029304029,27,7,0.
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3,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0,8,0.0,4.029304029304029,27,7,0.
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3,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0,8,0.0,4.029304029304029,27,7,0.
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3,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0,8,0.0,4.029304029304029,27,7,0.
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3,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0,8,0.0,4.029304029304029,27,7,0.
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3,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0,8,0.0,4.029304029304029,27,7,0.
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4,693,79,0.8976683937823834,0.10233160621761658,48.484848484848484,51.515151515151516,69.62025316455697,30.37974683544304,0,8,0.0,1.443001443001443,30,4,0.
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4,693,79,0.8976683937823834,0.10233160621761658,48.484848484848484,51.515151515151516,69.62025316455697,30.37974683544304,0,8,0.0,1.443001443001443,30,4,0.
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4,693,79,0.8976683937823834,0.10233160621761658,48.484848484848484,51.515151515151516,69.62025316455697,30.37974683544304,0,8,0.0,1.443001443001443,30,4,0.
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+
fold,split_type,train_len,val_len,train_perc,val_perc,train_active_perc,train_inactive_perc,val_active_perc,val_inactive_perc,test_active_perc,test_inactive_perc,num_leaking_uniprot,num_leaking_smiles,train_leaking_uniprot_perc,train_leaking_smiles_perc,train_unique_groups,val_unique_groups,val_loss,val_acc,val_f1_score,val_hp_metric,val_opt_score,val_precision,val_recall,val_roc_auc,test_loss,test_acc,test_f1_score,test_hp_metric,test_opt_score,test_precision,test_recall,test_roc_auc,hparam_hidden_dim,hparam_batch_size,hparam_learning_rate,hparam_join_embeddings,hparam_smote_k_neighbors,hparam_use_smote,hparam_apply_scaling,hparam_dropout,disabled_embeddings
|
2 |
+
0,uniprot,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0.5411764705882353,0.4588235294117647,0,35,0.0,10.357142857142858,24,10,0.7081143260002136,0.5,0.4952380955219269,0.5,0.9952380657196045,0.4193548262119293,0.604651153087616,0.5635843276977539,0.7645866870880127,0.47058823704719543,0.4303797483444214,0.47058823704719543,0.9009679555892944,0.5151515007019043,0.3695652186870575,0.47185057401657104,256,16,1.1862728135405334e-05,sum,5,True,True,0.24923825304171893,disabled poi e3 cell
|
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+
0,uniprot,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0.5411764705882353,0.4588235294117647,0,35,0.0,10.357142857142858,24,10,0.6426063179969788,0.6273584961891174,0.6146341562271118,0.6273584961891174,1.241992712020874,0.529411792755127,0.7325581312179565,0.7359726428985596,0.7906760573387146,0.5411764979362488,0.5806451439857483,0.5411764979362488,1.121821641921997,0.5744680762290955,0.5869565010070801,0.5713489055633545,256,16,1.1862728135405334e-05,sum,5,True,True,0.24923825304171893,
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|
7 |
+
0,uniprot,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0.5411764705882353,0.4588235294117647,0,35,0.0,10.357142857142858,24,10,0.6901318430900574,0.5943396091461182,0.5274725556373596,0.5943396091461182,1.121812105178833,0.5,0.5581395626068115,0.6326135396957397,0.8971289396286011,0.3764705955982208,0.3764705955982208,0.3764705955982208,0.7529411911964417,0.41025641560554504,0.3478260934352875,0.39437010884284973,256,16,1.1862728135405334e-05,sum,5,True,True,0.24923825304171893,disabled e3 cell
|
8 |
+
0,uniprot,560,212,0.7253886010362695,0.27461139896373055,54.46428571428571,45.535714285714285,40.56603773584906,59.43396226415094,0.5411764705882353,0.4588235294117647,0,35,0.0,10.357142857142858,24,10,0.7081143260002136,0.5,0.4952380955219269,0.5,0.9952380657196045,0.4193548262119293,0.604651153087616,0.5635843276977539,0.7645866870880127,0.47058823704719543,0.4303797483444214,0.47058823704719543,0.9009679555892944,0.5151515007019043,0.3695652186870575,0.47185057401657104,256,16,1.1862728135405334e-05,sum,5,True,True,0.24923825304171893,disabled poi e3 cell
|
9 |
+
1,uniprot,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0.5411764705882353,0.4588235294117647,0,28,0.0,6.698564593301436,27,7,0.6858163475990295,0.5862069129943848,0.5454545617103577,0.5862069129943848,1.1316614151000977,0.5538461804389954,0.5373134613037109,0.6322234869003296,0.9827105402946472,0.42352941632270813,0.37974682450294495,0.42352941632270813,0.8032762408256531,0.4545454680919647,0.32608696818351746,0.4183388948440552,512,16,1.3226373389569757e-05,sum,9,True,True,0.19337222787613398,disabled poi e3 cell
|
10 |
+
1,uniprot,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0.5411764705882353,0.4588235294117647,0,28,0.0,6.698564593301436,27,7,0.38154587149620056,0.9034482836723328,0.8999999761581421,0.9034482836723328,1.80344820022583,0.8630136847496033,0.9402984976768494,0.9083428978919983,0.783086359500885,0.7176470756530762,0.7272727489471436,0.7176470756530762,1.4449198246002197,0.761904776096344,0.695652186870575,0.71181720495224,512,16,1.3226373389569757e-05,sum,9,True,True,0.19337222787613398,
|
11 |
+
1,uniprot,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0.5411764705882353,0.4588235294117647,0,28,0.0,6.698564593301436,27,7,0.5508303642272949,0.7793103456497192,0.7647058963775635,0.7793103456497192,1.5440162420272827,0.7536231875419617,0.7761194109916687,0.799081563949585,0.8787249326705933,0.5529412031173706,0.5476190447807312,0.5529412031173706,1.100560188293457,0.6052631735801697,0.5,0.5214604139328003,512,16,1.3226373389569757e-05,sum,9,True,True,0.19337222787613398,disabled poi
|
12 |
+
1,uniprot,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0.5411764705882353,0.4588235294117647,0,28,0.0,6.698564593301436,27,7,0.47276586294174194,0.8137931227684021,0.8163265585899353,0.8137931227684021,1.6301196813583374,0.75,0.89552241563797,0.8526597619056702,0.8470982909202576,0.43529412150382996,0.4000000059604645,0.43529412150382996,0.8352941274642944,0.47058823704719543,0.3478260934352875,0.4735228419303894,512,16,1.3226373389569757e-05,sum,9,True,True,0.19337222787613398,disabled cell
|
13 |
+
1,uniprot,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0.5411764705882353,0.4588235294117647,0,28,0.0,6.698564593301436,27,7,0.41719290614128113,0.8275862336158752,0.8201438784599304,0.8275862336158752,1.6477301120758057,0.7916666865348816,0.8507462739944458,0.9154228568077087,0.6602932810783386,0.658823549747467,0.6813187003135681,0.658823549747467,1.3401422500610352,0.6888889074325562,0.6739130616188049,0.6769788265228271,512,16,1.3226373389569757e-05,sum,9,True,True,0.19337222787613398,disabled smiles
|
14 |
+
1,uniprot,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0.5411764705882353,0.4588235294117647,0,28,0.0,6.698564593301436,27,7,0.50785231590271,0.7724137902259827,0.7724137902259827,0.7724137902259827,1.5448275804519653,0.7179487347602844,0.8358209133148193,0.8023345470428467,0.9157821536064148,0.43529412150382996,0.4146341383457184,0.43529412150382996,0.8499282598495483,0.4722222089767456,0.3695652186870575,0.3999442458152771,512,16,1.3226373389569757e-05,sum,9,True,True,0.19337222787613398,disabled e3 cell
|
15 |
+
1,uniprot,627,145,0.8121761658031088,0.1878238341968912,51.674641148325364,48.32535885167464,46.206896551724135,53.79310344827586,0.5411764705882353,0.4588235294117647,0,28,0.0,6.698564593301436,27,7,0.6858163475990295,0.5862069129943848,0.5454545617103577,0.5862069129943848,1.1316614151000977,0.5538461804389954,0.5373134613037109,0.6322234869003296,0.9827105402946472,0.42352941632270813,0.37974682450294495,0.42352941632270813,0.8032762408256531,0.4545454680919647,0.32608696818351746,0.4183388948440552,512,16,1.3226373389569757e-05,sum,9,True,True,0.19337222787613398,disabled poi e3 cell
|
16 |
+
2,uniprot,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0.5411764705882353,0.4588235294117647,0,0,0.0,0.0,28,6,0.7273433208465576,0.4545454680919647,0.18918919563293457,0.4545454680919647,0.6437346935272217,0.3888888955116272,0.125,0.5130621790885925,0.7886066436767578,0.43529412150382996,0.25,0.43529412150382996,0.6852941513061523,0.4444444477558136,0.17391304671764374,0.49581941962242126,768,32,4.411650209949255e-05,concat,6,False,False,0.10762157022413184,disabled poi e3 cell
|
17 |
+
2,uniprot,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0.5411764705882353,0.4588235294117647,0,0,0.0,0.0,28,6,0.7579226493835449,0.5545454621315002,0.49484536051750183,0.5545454621315002,1.0493907928466797,0.5853658318519592,0.4285714328289032,0.6129298806190491,0.7280584573745728,0.6117647290229797,0.5925925970077515,0.6117647290229797,1.204357385635376,0.6857143044471741,0.52173912525177,0.6321070194244385,768,32,4.411650209949255e-05,concat,6,False,False,0.10762157022413184,
|
18 |
+
2,uniprot,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0.5411764705882353,0.4588235294117647,0,0,0.0,0.0,28,6,0.731427013874054,0.581818163394928,0.5740740895271301,0.581818163394928,1.155892252922058,0.5961538553237915,0.5535714030265808,0.5512565970420837,0.7333518862724304,0.48235294222831726,0.44999998807907104,0.48235294222831726,0.9323529005050659,0.529411792755127,0.3913043439388275,0.5209029912948608,768,32,4.411650209949255e-05,concat,6,False,False,0.10762157022413184,disabled poi
|
19 |
+
2,uniprot,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0.5411764705882353,0.4588235294117647,0,0,0.0,0.0,28,6,0.7971351146697998,0.5,0.2666666805744171,0.5,0.7666666507720947,0.5263158082962036,0.1785714328289032,0.6068121790885925,0.7473740577697754,0.6117647290229797,0.6024096608161926,0.6117647290229797,1.2141743898391724,0.6756756901741028,0.54347825050354,0.6167781352996826,768,32,4.411650209949255e-05,concat,6,False,False,0.10762157022413184,disabled cell
|
20 |
+
2,uniprot,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0.5411764705882353,0.4588235294117647,0,0,0.0,0.0,28,6,0.7500652074813843,0.48181816935539246,0.3132530152797699,0.48181816935539246,0.7950711846351624,0.48148149251937866,0.2321428507566452,0.5534061193466187,0.6856707334518433,0.6470588445663452,0.6153846383094788,0.6470588445663452,1.2624435424804688,0.75,0.52173912525177,0.6730769872665405,768,32,4.411650209949255e-05,concat,6,False,False,0.10762157022413184,disabled smiles
|
21 |
+
2,uniprot,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0.5411764705882353,0.4588235294117647,0,0,0.0,0.0,28,6,0.8174006342887878,0.4727272689342499,0.2368421107530594,0.4727272689342499,0.7095693945884705,0.44999998807907104,0.1607142835855484,0.5555555820465088,0.7780353426933289,0.4941176474094391,0.4819277226924896,0.4941176474094391,0.9760453701019287,0.5405405163764954,0.43478259444236755,0.5119843482971191,768,32,4.411650209949255e-05,concat,6,False,False,0.10762157022413184,disabled e3 cell
|
22 |
+
2,uniprot,662,110,0.8575129533678757,0.14248704663212436,50.60422960725075,49.39577039274924,50.90909090909091,49.09090909090909,0.5411764705882353,0.4588235294117647,0,0,0.0,0.0,28,6,0.7273433208465576,0.4545454680919647,0.18918919563293457,0.4545454680919647,0.6437346935272217,0.3888888955116272,0.125,0.5130621790885925,0.7886066436767578,0.43529412150382996,0.25,0.43529412150382996,0.6852941513061523,0.4444444477558136,0.17391304671764374,0.49581941962242126,768,32,4.411650209949255e-05,concat,6,False,False,0.10762157022413184,disabled poi e3 cell
|
23 |
+
3,uniprot,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0.5411764705882353,0.4588235294117647,0,8,0.0,4.029304029304029,27,7,0.7283293604850769,0.4115044176578522,0.3448275923728943,0.4115044176578522,0.7563320398330688,0.46052631735801697,0.27559053897857666,0.41660699248313904,0.715801477432251,0.47058823704719543,0.3661971688270569,0.47058823704719543,0.8367854356765747,0.5199999809265137,0.28260868787765503,0.48467111587524414,256,32,1.112328743437336e-05,concat,12,True,True,0.4394609073377119,disabled poi e3 cell
|
24 |
+
3,uniprot,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0.5411764705882353,0.4588235294117647,0,8,0.0,4.029304029304029,27,7,0.652347207069397,0.5309734344482422,0.5725806355476379,0.5309734344482422,1.1035540103912354,0.586776852607727,0.5590550899505615,0.5739282369613647,0.7233818769454956,0.5529412031173706,0.6041666865348816,0.5529412031173706,1.1571078300476074,0.5799999833106995,0.6304348111152649,0.5535116791725159,256,32,1.112328743437336e-05,concat,12,True,True,0.4394609073377119,
|
25 |
+
3,uniprot,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0.5411764705882353,0.4588235294117647,0,8,0.0,4.029304029304029,27,7,0.7046996355056763,0.5132743120193481,0.5736433863639832,0.5132743120193481,1.0869176387786865,0.5648854970932007,0.5826771855354309,0.4632943570613861,0.7139391303062439,0.48235294222831726,0.5416666865348816,0.48235294222831726,1.0240195989608765,0.5199999809265137,0.5652173757553101,0.5008361339569092,256,32,1.112328743437336e-05,concat,12,True,True,0.4394609073377119,disabled poi
|
26 |
+
3,uniprot,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0.5411764705882353,0.4588235294117647,0,8,0.0,4.029304029304029,27,7,0.969575822353363,0.47787609696388245,0.28915661573410034,0.47787609696388245,0.7670327425003052,0.6153846383094788,0.18897637724876404,0.48289984464645386,0.7674039006233215,0.529411792755127,0.4117647111415863,0.529411792755127,0.9411765336990356,0.6363636255264282,0.30434781312942505,0.595596432685852,256,32,1.112328743437336e-05,concat,12,True,True,0.4394609073377119,disabled cell
|
27 |
+
3,uniprot,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0.5411764705882353,0.4588235294117647,0,8,0.0,4.029304029304029,27,7,0.8798069953918457,0.4690265357494354,0.25925925374031067,0.4690265357494354,0.7282857894897461,0.6000000238418579,0.16535432636737823,0.5483576059341431,0.7150194048881531,0.5529412031173706,0.5,0.5529412031173706,1.0529412031173706,0.6333333253860474,0.41304346919059753,0.601170539855957,256,32,1.112328743437336e-05,concat,12,True,True,0.4394609073377119,disabled smiles
|
28 |
+
3,uniprot,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0.5411764705882353,0.4588235294117647,0,8,0.0,4.029304029304029,27,7,0.7589913010597229,0.47345131635665894,0.5142857432365417,0.47345131635665894,0.9877370595932007,0.5338982939720154,0.4960629940032959,0.4707309305667877,0.7433217167854309,0.5411764979362488,0.642201840877533,0.5411764979362488,1.1833783388137817,0.5555555820465088,0.760869562625885,0.5158863067626953,256,32,1.112328743437336e-05,concat,12,True,True,0.4394609073377119,disabled e3 cell
|
29 |
+
3,uniprot,546,226,0.7072538860103627,0.2927461139896373,48.35164835164835,51.64835164835166,56.19469026548673,43.80530973451327,0.5411764705882353,0.4588235294117647,0,8,0.0,4.029304029304029,27,7,0.7283293604850769,0.4115044176578522,0.3448275923728943,0.4115044176578522,0.7563320398330688,0.46052631735801697,0.27559053897857666,0.41660699248313904,0.715801477432251,0.47058823704719543,0.3661971688270569,0.47058823704719543,0.8367854356765747,0.5199999809265137,0.28260868787765503,0.48467111587524414,256,32,1.112328743437336e-05,concat,12,True,True,0.4394609073377119,disabled poi e3 cell
|
30 |
+
4,uniprot,693,79,0.8976683937823834,0.10233160621761658,48.484848484848484,51.515151515151516,69.62025316455697,30.37974683544304,0.5411764705882353,0.4588235294117647,0,8,0.0,1.443001443001443,30,4,0.8284885883331299,0.27848100662231445,0.27848100662231445,0.27848100662231445,0.5569620132446289,0.4583333432674408,0.20000000298023224,0.2859848439693451,0.7320193648338318,0.5529412031173706,0.5365853905677795,0.5529412031173706,1.089526653289795,0.6111111044883728,0.47826087474823,0.5309364199638367,512,8,1.6288676258334464e-05,beginning,5,False,True,0.4070389054878136,disabled poi e3 cell
|
31 |
+
4,uniprot,693,79,0.8976683937823834,0.10233160621761658,48.484848484848484,51.515151515151516,69.62025316455697,30.37974683544304,0.5411764705882353,0.4588235294117647,0,8,0.0,1.443001443001443,30,4,0.6078348159790039,0.6582278609275818,0.787401556968689,0.6582278609275818,1.445629358291626,0.6944444179534912,0.9090909361839294,0.6772726774215698,1.0496050119400024,0.5411764979362488,0.5411764979362488,0.5411764979362488,1.0823529958724976,0.5897436141967773,0.5,0.5222964882850647,512,8,1.6288676258334464e-05,beginning,5,False,True,0.4070389054878136,
|
32 |
+
4,uniprot,693,79,0.8976683937823834,0.10233160621761658,48.484848484848484,51.515151515151516,69.62025316455697,30.37974683544304,0.5411764705882353,0.4588235294117647,0,8,0.0,1.443001443001443,30,4,0.9212656021118164,0.4177215099334717,0.34285715222358704,0.4177215099334717,0.7605786323547363,0.800000011920929,0.2181818187236786,0.48636364936828613,0.87529456615448,0.48235294222831726,0.2666666805744171,0.48235294222831726,0.7490196228027344,0.5714285969734192,0.17391304671764374,0.4902452230453491,512,8,1.6288676258334464e-05,beginning,5,False,True,0.4070389054878136,disabled poi
|
33 |
+
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reports/cv_report_hparam_search_5-splits_Active_Dmax_0.6_pDC50_6.0_test_split_0.2.csv
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12 |
+
1,uniprot,574,116,0.8318840579710145,0.1681159420289855,52.4390243902439,47.5609756097561,43.103448275862064,56.896551724137936,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,18,6,0.7436908483505249,0.5344827771186829,0.47058823704719543,0.5344827771186829,1.0050710439682007,0.4615384638309479,0.47999998927116394,0.5074242353439331,0.7293317317962646,0.49700599908828735,0.5531914830207825,0.49700599908828735,1.0501974821090698,0.5098039507865906,0.604651153087616,0.5027993321418762,256,32,6.342131182274154e-05,sum,12,False,True,0.47052281342749736,disabled cell
|
13 |
+
1,uniprot,574,116,0.8318840579710145,0.1681159420289855,52.4390243902439,47.5609756097561,43.103448275862064,56.896551724137936,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,18,6,0.7024935483932495,0.5,0.3695652186870575,0.5,0.8695652484893799,0.4047619104385376,0.3400000035762787,0.5692424178123474,0.762819766998291,0.538922131061554,0.5745856165885925,0.538922131061554,1.1135077476501465,0.5473684072494507,0.604651153087616,0.5778782367706299,256,32,6.342131182274154e-05,sum,12,False,True,0.47052281342749736,disabled smiles
|
14 |
+
1,uniprot,574,116,0.8318840579710145,0.1681159420289855,52.4390243902439,47.5609756097561,43.103448275862064,56.896551724137936,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,18,6,0.7174515128135681,0.5,0.4423076808452606,0.5,0.942307710647583,0.42592594027519226,0.46000000834465027,0.46378785371780396,0.7473962306976318,0.46107783913612366,0.47058823704719543,0.46107783913612366,0.9316660761833191,0.4761904776096344,0.4651162922382355,0.4855727553367615,256,32,6.342131182274154e-05,sum,12,False,True,0.47052281342749736,disabled e3 cell
|
15 |
+
1,uniprot,574,116,0.8318840579710145,0.1681159420289855,52.4390243902439,47.5609756097561,43.103448275862064,56.896551724137936,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,18,6,0.7288892269134521,0.5258620977401733,0.5454545617103577,0.5258620977401733,1.0713167190551758,0.4647887349128723,0.6600000262260437,0.5436363816261292,0.7159250974655151,0.4491018056869507,0.4888888895511627,0.4491018056869507,0.937990665435791,0.4680851101875305,0.5116279125213623,0.447315514087677,256,32,6.342131182274154e-05,sum,12,False,True,0.47052281342749736,disabled poi e3 cell
|
16 |
+
2,uniprot,556,134,0.8057971014492754,0.19420289855072465,53.597122302158276,46.402877697841724,39.55223880597015,60.447761194029844,0.5149700598802395,0.48502994011976047,0,19,0.0,6.294964028776978,19,5,0.6794896125793457,0.641791045665741,0.47826087474823,0.641791045665741,1.1200518608093262,0.5641025900840759,0.4150943458080292,0.6972979307174683,0.6978184580802917,0.46706587076187134,0.44025155901908875,0.46706587076187134,0.9073173999786377,0.4794520437717438,0.40697672963142395,0.4407837986946106,512,8,1.35532477624785e-05,sum,9,True,True,0.2789725886176532,disabled poi e3 cell
|
17 |
+
2,uniprot,556,134,0.8057971014492754,0.19420289855072465,53.597122302158276,46.402877697841724,39.55223880597015,60.447761194029844,0.5149700598802395,0.48502994011976047,0,19,0.0,6.294964028776978,19,5,0.45820537209510803,0.8208954930305481,0.75,0.8208954930305481,1.5708954334259033,0.8372092843055725,0.6792452931404114,0.872583270072937,1.0918422937393188,0.56886225938797,0.6129032373428345,0.56886225938797,1.1817655563354492,0.5699999928474426,0.6627907156944275,0.600631594657898,512,8,1.35532477624785e-05,sum,9,True,True,0.2789725886176532,
|
18 |
+
2,uniprot,556,134,0.8057971014492754,0.19420289855072465,53.597122302158276,46.402877697841724,39.55223880597015,60.447761194029844,0.5149700598802395,0.48502994011976047,0,19,0.0,6.294964028776978,19,5,0.7354412078857422,0.4701492488384247,0.4661654233932495,0.4701492488384247,0.9363147020339966,0.38749998807907104,0.5849056839942932,0.5506638884544373,0.7296605110168457,0.49700599908828735,0.4939759075641632,0.49700599908828735,0.990981936454773,0.512499988079071,0.4767441749572754,0.5360321998596191,512,8,1.35532477624785e-05,sum,9,True,True,0.2789725886176532,disabled poi
|
19 |
+
2,uniprot,556,134,0.8057971014492754,0.19420289855072465,53.597122302158276,46.402877697841724,39.55223880597015,60.447761194029844,0.5149700598802395,0.48502994011976047,0,19,0.0,6.294964028776978,19,5,0.6661760210990906,0.5149253606796265,0.47154471278190613,0.5149253606796265,0.986470103263855,0.41428571939468384,0.5471698045730591,0.5861868262290955,0.7076048851013184,0.5568862557411194,0.6407766938209534,0.5568862557411194,1.1976629495620728,0.550000011920929,0.7674418687820435,0.6163508892059326,512,8,1.35532477624785e-05,sum,9,True,True,0.2789725886176532,disabled cell
|
20 |
+
2,uniprot,556,134,0.8057971014492754,0.19420289855072465,53.597122302158276,46.402877697841724,39.55223880597015,60.447761194029844,0.5149700598802395,0.48502994011976047,0,19,0.0,6.294964028776978,19,5,0.4292914867401123,0.8507462739944458,0.7777777910232544,0.8507462739944458,1.6285240650177002,0.9459459185600281,0.6603773832321167,0.8711857199668884,0.8857823014259338,0.57485032081604,0.6203208565711975,0.57485032081604,1.1951711177825928,0.5742574334144592,0.6744186282157898,0.6060149669647217,512,8,1.35532477624785e-05,sum,9,True,True,0.2789725886176532,disabled smiles
|
21 |
+
2,uniprot,556,134,0.8057971014492754,0.19420289855072465,53.597122302158276,46.402877697841724,39.55223880597015,60.447761194029844,0.5149700598802395,0.48502994011976047,0,19,0.0,6.294964028776978,19,5,0.6579882502555847,0.5373134613037109,0.06060606241226196,0.5373134613037109,0.5979195237159729,0.1538461595773697,0.03773584961891174,0.6660842895507812,0.7808316946029663,0.46107783913612366,0.4444444477558136,0.46107783913612366,0.9055222868919373,0.4736842215061188,0.41860464215278625,0.48743894696235657,512,8,1.35532477624785e-05,sum,9,True,True,0.2789725886176532,disabled e3 cell
|
22 |
+
2,uniprot,556,134,0.8057971014492754,0.19420289855072465,53.597122302158276,46.402877697841724,39.55223880597015,60.447761194029844,0.5149700598802395,0.48502994011976047,0,19,0.0,6.294964028776978,19,5,0.6794896125793457,0.641791045665741,0.47826087474823,0.641791045665741,1.1200518608093262,0.5641025900840759,0.4150943458080292,0.6972979307174683,0.6978184580802917,0.46706587076187134,0.44025155901908875,0.46706587076187134,0.9073173999786377,0.4794520437717438,0.40697672963142395,0.4407837986946106,512,8,1.35532477624785e-05,sum,9,True,True,0.2789725886176532,disabled poi e3 cell
|
23 |
+
3,uniprot,531,159,0.7695652173913043,0.23043478260869565,48.96421845574388,51.03578154425612,57.23270440251572,42.76729559748428,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,19,5,0.7518542408943176,0.3899371027946472,0.28148147463798523,0.3899371027946472,0.6714185476303101,0.4318181872367859,0.20879121124744415,0.3611021339893341,0.6964150071144104,0.514970064163208,0.3909774422645569,0.514970064163208,0.9059475064277649,0.5531914830207825,0.302325576543808,0.5588573217391968,768,32,1.0007406360245575e-05,concat,10,True,False,0.11896366443648115,disabled poi e3 cell
|
24 |
+
3,uniprot,531,159,0.7695652173913043,0.23043478260869565,48.96421845574388,51.03578154425612,57.23270440251572,42.76729559748428,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,19,5,0.693130612373352,0.5849056839942932,0.6796116232872009,0.5849056839942932,1.2645173072814941,0.6086956262588501,0.7692307829856873,0.5866192579269409,0.6817607283592224,0.57485032081604,0.6395938992500305,0.57485032081604,1.2144441604614258,0.5675675868988037,0.7325581312179565,0.5994832515716553,768,32,1.0007406360245575e-05,concat,10,True,False,0.11896366443648115,
|
25 |
+
3,uniprot,531,159,0.7695652173913043,0.23043478260869565,48.96421845574388,51.03578154425612,57.23270440251572,42.76729559748428,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,19,5,0.7868107557296753,0.5723270177841187,0.6964285969734192,0.5723270177841187,1.2687556743621826,0.5864661931991577,0.8571428656578064,0.4869101643562317,0.8022510409355164,0.4790419042110443,0.6027397513389587,0.4790419042110443,1.0817816257476807,0.49624061584472656,0.7674418687820435,0.549095630645752,768,32,1.0007406360245575e-05,concat,10,True,False,0.11896366443648115,disabled poi
|
26 |
+
3,uniprot,531,159,0.7695652173913043,0.23043478260869565,48.96421845574388,51.03578154425612,57.23270440251572,42.76729559748428,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,19,5,0.8134657144546509,0.5157232880592346,0.5882353186607361,0.5157232880592346,1.1039586067199707,0.5729166865348816,0.6043956279754639,0.43204590678215027,0.731482207775116,0.56886225938797,0.6504854559898376,0.56886225938797,1.2193477153778076,0.5583333373069763,0.7790697813034058,0.6143410801887512,768,32,1.0007406360245575e-05,concat,10,True,False,0.11896366443648115,disabled cell
|
27 |
+
3,uniprot,531,159,0.7695652173913043,0.23043478260869565,48.96421845574388,51.03578154425612,57.23270440251572,42.76729559748428,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,19,5,0.7746338844299316,0.44025155901908875,0.46060606837272644,0.44025155901908875,0.9008576273918152,0.5135135054588318,0.4175824224948883,0.5265836715698242,0.7525109052658081,0.56886225938797,0.6086956262588501,0.56886225938797,1.1775579452514648,0.5714285969734192,0.6511628031730652,0.6248205900192261,768,32,1.0007406360245575e-05,concat,10,True,False,0.11896366443648115,disabled smiles
|
28 |
+
3,uniprot,531,159,0.7695652173913043,0.23043478260869565,48.96421845574388,51.03578154425612,57.23270440251572,42.76729559748428,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,19,5,0.7098957300186157,0.402515709400177,0.4378698170185089,0.402515709400177,0.8403855562210083,0.4743589758872986,0.4065934121608734,0.4080478250980377,0.7146878838539124,0.5029940009117126,0.4779874086380005,0.5029940009117126,0.9809814095497131,0.5205479264259338,0.44186046719551086,0.5276342630386353,768,32,1.0007406360245575e-05,concat,10,True,False,0.11896366443648115,disabled e3 cell
|
29 |
+
3,uniprot,531,159,0.7695652173913043,0.23043478260869565,48.96421845574388,51.03578154425612,57.23270440251572,42.76729559748428,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,19,5,0.7518542408943176,0.3899371027946472,0.28148147463798523,0.3899371027946472,0.6714185476303101,0.4318181872367859,0.20879121124744415,0.3611021339893341,0.6964150071144104,0.514970064163208,0.3909774422645569,0.514970064163208,0.9059475064277649,0.5531914830207825,0.302325576543808,0.5588573217391968,768,32,1.0007406360245575e-05,concat,10,True,False,0.11896366443648115,disabled poi e3 cell
|
30 |
+
4,uniprot,581,109,0.8420289855072464,0.15797101449275364,48.364888123924274,51.63511187607573,64.22018348623854,35.77981651376147,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,21,3,0.821151614189148,0.40366971492767334,0.3689320385456085,0.40366971492767334,0.7726017236709595,0.5757575631141663,0.27142858505249023,0.502380907535553,0.8567180633544922,0.46706587076187134,0.3206106722354889,0.46706587076187134,0.7876765727996826,0.46666666865348816,0.24418604373931885,0.4581539034843445,512,16,1.0987892662179087e-05,sum,5,True,False,0.24541120873419606,disabled poi e3 cell
|
31 |
+
4,uniprot,581,109,0.8420289855072464,0.15797101449275364,48.364888123924274,51.63511187607573,64.22018348623854,35.77981651376147,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,21,3,0.6921398043632507,0.4678899049758911,0.38297873735427856,0.4678899049758911,0.8508686423301697,0.75,0.2571428716182709,0.6357142925262451,0.6977493762969971,0.443113774061203,0.3921568691730499,0.443113774061203,0.8352706432342529,0.447761207818985,0.3488371968269348,0.4575078785419464,512,16,1.0987892662179087e-05,sum,5,True,False,0.24541120873419606,
|
32 |
+
4,uniprot,581,109,0.8420289855072464,0.15797101449275364,48.364888123924274,51.63511187607573,64.22018348623854,35.77981651376147,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,21,3,0.8941754698753357,0.40366971492767334,0.43478259444236755,0.40366971492767334,0.8384523391723633,0.5555555820465088,0.3571428656578064,0.4137362539768219,0.7334728240966797,0.46107783913612366,0.4767441749572754,0.46107783913612366,0.9378219842910767,0.4767441749572754,0.4767441749572754,0.47803616523742676,512,16,1.0987892662179087e-05,sum,5,True,False,0.24541120873419606,disabled poi
|
33 |
+
4,uniprot,581,109,0.8420289855072464,0.15797101449275364,48.364888123924274,51.63511187607573,64.22018348623854,35.77981651376147,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,21,3,0.7923731803894043,0.4954128563404083,0.42105263471603394,0.4954128563404083,0.9164655208587646,0.800000011920929,0.2857142984867096,0.7657508850097656,0.8345628380775452,0.514970064163208,0.4000000059604645,0.514970064163208,0.9149700403213501,0.5510203838348389,0.3139534890651703,0.536391019821167,512,16,1.0987892662179087e-05,sum,5,True,False,0.24541120873419606,disabled cell
|
34 |
+
4,uniprot,581,109,0.8420289855072464,0.15797101449275364,48.364888123924274,51.63511187607573,64.22018348623854,35.77981651376147,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,21,3,0.8378658294677734,0.4862385392189026,0.48148149251937866,0.4862385392189026,0.9677200317382812,0.6842105388641357,0.37142857909202576,0.595787525177002,0.7141044735908508,0.6107784509658813,0.6242774724960327,0.6107784509658813,1.235055923461914,0.6206896305084229,0.6279069781303406,0.6230261325836182,512,16,1.0987892662179087e-05,sum,5,True,False,0.24541120873419606,disabled smiles
|
35 |
+
4,uniprot,581,109,0.8420289855072464,0.15797101449275364,48.364888123924274,51.63511187607573,64.22018348623854,35.77981651376147,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,21,3,0.683878481388092,0.5504587292671204,0.5504587292671204,0.5504587292671204,1.1009174585342407,0.7692307829856873,0.4285714328289032,0.6994505524635315,0.868337869644165,0.4491018056869507,0.4523809552192688,0.4491018056869507,0.9014827609062195,0.46341463923454285,0.44186046719551086,0.4561441242694855,512,16,1.0987892662179087e-05,sum,5,True,False,0.24541120873419606,disabled e3 cell
|
36 |
+
4,uniprot,581,109,0.8420289855072464,0.15797101449275364,48.364888123924274,51.63511187607573,64.22018348623854,35.77981651376147,0.5149700598802395,0.48502994011976047,0,0,0.0,0.0,21,3,0.821151614189148,0.40366971492767334,0.3689320385456085,0.40366971492767334,0.7726017236709595,0.5757575631141663,0.27142858505249023,0.502380907535553,0.8567180633544922,0.46706587076187134,0.3206106722354889,0.46706587076187134,0.7876765727996826,0.46666666865348816,0.24418604373931885,0.4581539034843445,512,16,1.0987892662179087e-05,sum,5,True,False,0.24541120873419606,disabled poi e3 cell
|