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import torch | |
import os | |
import gradio as gr | |
import numpy as np | |
import matplotlib.pyplot as plt | |
from PIL import Image | |
from functools import partial | |
import Utils.Pneumonia_Utils as PU | |
import Utils.CT_Scan_Utils as CSU | |
import Utils.Covid19_Utils as C19U | |
import Utils.DR_Utils as DRU | |
# Constants for model paths | |
CANCER_MODEL_PATH = 'cs_models/EfficientNet_CT_Scans.pth.tar' | |
DIABETIC_RETINOPATHY_MODEL_PATH = 'cs_models/model_DR_9.pth.tar' | |
PNEUMONIA_MODEL_PATH = 'cs_models/DenseNet_Pneumonia.pth.tar' | |
COVID_MODEL_PATH = 'cs_models/DenseNet_Covid.pth.tar' | |
# Constants for class labels | |
CANCER_CLASS_LABELS = ['adenocarcinoma','large.cell.carcinoma','normal','squamous.cell.carcinoma'] | |
DIABETIC_RETINOPATHY_CLASS_LABELS = ['No DR','Mild', 'Moderate', 'Severe', 'Proliferative DR'] | |
PNEUMONIA_CLASS_LABELS = ['Normal', 'Pneumonia'] | |
COVID_CLASS_LABELS = ['Normal','Covid19'] | |
if torch.cuda.is_available(): | |
device = torch.device("cuda") | |
else: | |
device = torch.device("cpu") | |
def cancer_page(image, test_model): | |
x_ray_image = CSU.transform_image(image, CSU.val_transform) | |
x_ray_image = x_ray_image.to(device) | |
grad_x_ray_image, pred_label, pred_conf = CSU.plot_grad_cam(test_model, | |
x_ray_image, | |
CANCER_CLASS_LABELS, | |
normalized=True) | |
grad_x_ray_image = np.clip(grad_x_ray_image, 0, 1) | |
return grad_x_ray_image, pred_label, pred_conf | |
def covid_page(image, test_model): | |
x_ray_image = C19U.transform_image(image, C19U.val_transform) | |
x_ray_image = x_ray_image.to(device) | |
grad_x_ray_image, pred_label, pred_conf = C19U.plot_grad_cam(test_model, | |
x_ray_image, | |
COVID_CLASS_LABELS, | |
normalized=True) | |
grad_x_ray_image = np.clip(grad_x_ray_image, 0, 1) | |
return grad_x_ray_image, pred_label, pred_conf | |
def pneumonia_page(image, test_model): | |
x_ray_image = PU.transform_image(image, PU.val_transform) | |
x_ray_image = x_ray_image.to(device) | |
grad_x_ray_image, pred_label, pred_conf = PU.plot_grad_cam(test_model, | |
x_ray_image, | |
PNEUMONIA_CLASS_LABELS, | |
normalized=True) | |
grad_x_ray_image = np.clip(grad_x_ray_image, 0, 1) | |
return grad_x_ray_image, pred_label, pred_conf | |
def diabetic_retinopathy_page(image_1, image_2, test_model): | |
images = DRU.transform_image(image_1, image_2, DRU.val_transform) | |
pred_label_1, pred_label_2 = DRU.Inf_predict_image(test_model, | |
images, | |
DIABETIC_RETINOPATHY_CLASS_LABELS) | |
return pred_label_1, pred_label_2 | |
if __name__ == "__main__": | |
CSU_model = CSU.Efficient().to(device) | |
CSU_model.load_state_dict(torch.load(CANCER_MODEL_PATH,map_location=torch.device('cpu')),strict=False) | |
CSU_test_model = CSU.ModelGradCam(CSU_model).to(device) | |
CSU_images_dir = "TESTS/CHEST_CT_SCANS" | |
all_images = os.listdir(CSU_images_dir) | |
CSU_examples = [[os.path.join(CSU_images_dir,image)] for image in np.random.choice(all_images, size=4, replace=False)] | |
C19U_model = C19U.DenseNet().to(device) | |
C19U_model.load_state_dict(torch.load(COVID_MODEL_PATH,map_location=torch.device('cpu')),strict=False) | |
C19U_test_model = C19U.ModelGradCam(C19U_model).to(device) | |
C19U_C19_images_dir = [[os.path.join("TESTS/COVID19",image)] for image in np.random.choice(os.listdir("TESTS/COVID19"), size=2, replace=False)] | |
NORM_images_dir = [[os.path.join("TESTS/NORMAL",image)] for image in np.random.choice(os.listdir("TESTS/NORMAL"), size=2, replace=False)] | |
C19U_examples = C19U_C19_images_dir + NORM_images_dir | |
PU_model = PU.DenseNet.to(device) | |
PU_model.load_state_dict(torch.load(PNEUMONIA_MODEL_PATH,map_location=torch.device('cpu')),strict=False) | |
PU_test_model = PU.ModelGradCam(PU_model).to(device) | |
PU_images_dir = [[os.path.join("TESTS/PNEUMONIA",image)] for image in np.random.choice(os.listdir("TESTS/PNEUMONIA"), size=2, replace=False)] | |
NORM_images_dir = [[os.path.join("TESTS/NORMAL",image)] for image in np.random.choice(os.listdir("TESTS/NORMAL"), size=2, replace=False)] | |
PU_examples = PU_images_dir + NORM_images_dir | |
DRU_cnn_model = DRU.ConvolutionNeuralNetwork().to(device) | |
DRU_eff_b3 = DRU.Efficient().to(device) | |
DRU_ensemble = DRU.EnsembleModel(DRU_cnn_model, DRU_eff_b3).to(device) | |
DRU_ensemble.load_state_dict(torch.load(DIABETIC_RETINOPATHY_MODEL_PATH,map_location=torch.device('cpu'))["state_dict"], strict=False) | |
DRU_test_model = DRU_ensemble | |
DRU_examples = [['TESTS/DR_1/10030_left._aug_0._aug_6.jpeg','TESTS/DR_0/10031_right._aug_17.jpeg']] | |
cancer_interface = gr.Interface( | |
fn=partial(cancer_page,test_model=CSU_test_model), | |
inputs=gr.Image(type="pil", label="Image"), | |
outputs=[ | |
gr.Image(type="numpy", label="Heatmap Image"), | |
gr.Textbox(label="Labels Present"), | |
gr.Label(label="Probabilities", show_label=False) | |
], | |
examples=CSU_examples, | |
cache_examples=False, | |
allow_flagging="never", | |
title="Chest Cancer Detection System" | |
) | |
covid_interface = gr.Interface( | |
fn=partial(covid_page,test_model=C19U_test_model), | |
inputs=gr.Image(type="pil", label="Image"), | |
outputs=[ | |
gr.Image(type="numpy", label="Heatmap Image"), | |
gr.Textbox(label="Labels Present"), | |
gr.Label(label="Probabilities", show_label=False) | |
], | |
examples=C19U_examples, | |
cache_examples=False, | |
allow_flagging="never", | |
title="Covid Detection System" | |
) | |
pneumonia_interface = gr.Interface( | |
fn=partial(pneumonia_page,test_model=PU_test_model), | |
inputs=gr.Image(type="pil", label="Image"), | |
outputs=[ | |
gr.Image(type="numpy", label="Heatmap Image"), | |
gr.Textbox(label="Labels Present"), | |
gr.Label(label="Probabilities", show_label=False) | |
], | |
examples=PU_examples, | |
cache_examples=False, | |
allow_flagging="never", | |
title="Pneumonia Detection System" | |
) | |
diabetic_retinopathy_interface = gr.Interface( | |
fn=partial(diabetic_retinopathy_page,test_model=DRU_test_model), | |
inputs=[gr.Image(type="pil", label="Image"), gr.Image(type="pil", label="Image")], | |
outputs=[ | |
gr.Textbox(label="Labels Present"), | |
gr.Textbox(label="Labels Present") | |
], | |
examples=DRU_examples, | |
cache_examples=False, | |
allow_flagging="never", | |
title="Diabetic Retinopathy System" | |
) | |
demo = gr.TabbedInterface( | |
[cancer_interface, | |
covid_interface, | |
pneumonia_interface, | |
diabetic_retinopathy_interface], | |
["Chest Cancer", "Covid19", "Pneumonia", "Diabetic Retinopathy"]) | |
demo.launch(share=True) | |