Arts-of-coding commited on
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4b27cb2
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1 Parent(s): 5e3fced

Update dash_plotly_QC_scRNA.py

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  1. dash_plotly_QC_scRNA.py +3 -3
dash_plotly_QC_scRNA.py CHANGED
@@ -399,10 +399,10 @@ def update_graph_and_pie_chart(batch_chosen, s_chosen, g2m_chosen, condition1_ch
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  dff_pre = dff.select(list_conds)
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  # Melt wide format DataFrame into long format
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- dff_long = dff_pre.melt(id_vars="batch", variable_name="Gene", value_name="Expression")
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  # Calculate the mean expression levels for each gene in each region
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- expression_means = dff_long.lazy().groupby(["batch", "Gene"]).agg(pl.mean("Expression")).collect()
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  #expression_means = expression_means.select(["batch", "Gene", "Expression"] + condition3_chosen)
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@@ -454,7 +454,7 @@ def update_graph_and_pie_chart(batch_chosen, s_chosen, g2m_chosen, condition1_ch
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  #labels={'X_umap-0': 'umap1' , 'X_umap-1': 'umap2'},
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  hover_name='batch',template="seaborn")
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- fig_scatter_12 = px.scatter(data_frame=expression_means, x="batch", y="Gene", color="Mean expression",
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  #labels={'X_umap-0': 'umap1' , 'X_umap-1': 'umap2'},
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  hover_name='batch',template="seaborn")
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  dff_pre = dff.select(list_conds)
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  # Melt wide format DataFrame into long format
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+ dff_long = dff_pre.melt(id_vars="batch", variable_name="Gene", value_name="Mean expression")
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  # Calculate the mean expression levels for each gene in each region
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+ expression_means = dff_long.lazy().groupby(["batch", "Gene"]).agg(pl.mean("Mean expression")).collect()
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  #expression_means = expression_means.select(["batch", "Gene", "Expression"] + condition3_chosen)
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  #labels={'X_umap-0': 'umap1' , 'X_umap-1': 'umap2'},
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  hover_name='batch',template="seaborn")
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+ fig_scatter_12 = px.scatter(data_frame=expression_means, x="Gene", y="batch", color="Mean expression",
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  #labels={'X_umap-0': 'umap1' , 'X_umap-1': 'umap2'},
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  hover_name='batch',template="seaborn")
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