inplemented functionaility for custom user
Browse files
app.py
ADDED
@@ -0,0 +1,514 @@
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1 |
+
import gradio as gr
|
2 |
+
import paho.mqtt.client as mqtt
|
3 |
+
import os
|
4 |
+
import json
|
5 |
+
import time
|
6 |
+
|
7 |
+
HOST = os.getenv("host")
|
8 |
+
PORT = os.getenv("port")
|
9 |
+
USERNAME = os.getenv("username")
|
10 |
+
PASSWORD = os.getenv("password")
|
11 |
+
PIOREACTOR = os.getenv("pioreactor")
|
12 |
+
|
13 |
+
HOST_gr = gr.State("Host", HOST)
|
14 |
+
PORT_gr = gr.State("Port", PORT)
|
15 |
+
USERNAME_gr = gr.State("Username", USERNAME)
|
16 |
+
PASSWORD_gr = gr.State("Password", PASSWORD)
|
17 |
+
PIOREACTOR_gr = gr.State("Pioreactor", PIOREACTOR)
|
18 |
+
|
19 |
+
client = None
|
20 |
+
client_custom = None
|
21 |
+
|
22 |
+
|
23 |
+
def on_connect(client, userdata, flags, rc):
|
24 |
+
print("Connected with result code "+str(rc))
|
25 |
+
|
26 |
+
def create_client(host, port, username, password):
|
27 |
+
client = mqtt.Client()
|
28 |
+
client.username_pw_set(username, password)
|
29 |
+
client.tls_set(tls_version=mqtt.ssl.PROTOCOL_TLS)
|
30 |
+
client.on_connect = on_connect
|
31 |
+
client.connect(host, port)
|
32 |
+
client.loop_start()
|
33 |
+
return client
|
34 |
+
|
35 |
+
def on_message_worker(client, userdata, message):
|
36 |
+
payload = message.payload.decode("utf-8")
|
37 |
+
data = json.loads(payload)
|
38 |
+
global experiment
|
39 |
+
global running
|
40 |
+
global temp_mqtt_auto
|
41 |
+
global rpm_mqtt
|
42 |
+
global led_mqtt
|
43 |
+
global experiments
|
44 |
+
experiment = data.get("experiment", None)
|
45 |
+
running = data.get("running", [])
|
46 |
+
temp_mqtt_auto = data.get("temperature_automation", None)
|
47 |
+
rpm_mqtt = data.get("stirring", None)
|
48 |
+
led_mqtt = data.get("leds", None)
|
49 |
+
experiments = data.get("experiments", [])
|
50 |
+
|
51 |
+
|
52 |
+
def store_client():
|
53 |
+
global client
|
54 |
+
global HOST
|
55 |
+
global PORT
|
56 |
+
global USERNAME
|
57 |
+
global PASSWORD
|
58 |
+
client = create_client(HOST, PORT, USERNAME, PASSWORD)
|
59 |
+
|
60 |
+
def custom_client(host, port, username, password):
|
61 |
+
global client_custom
|
62 |
+
client_custom = create_client(host, port, username, password)
|
63 |
+
|
64 |
+
def stirring(rpm, host, port, username, password, pioreactor, experiment, state):
|
65 |
+
global client_custom
|
66 |
+
if client_custom is None:
|
67 |
+
custom_client(host, port, username, password)
|
68 |
+
|
69 |
+
if state == "start":
|
70 |
+
payload = {
|
71 |
+
"command": "start_stirring",
|
72 |
+
"experiment": experiment,
|
73 |
+
"reactor": pioreactor,
|
74 |
+
"rpm": rpm
|
75 |
+
}
|
76 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
77 |
+
elif state == "stop":
|
78 |
+
payload = {
|
79 |
+
"command": "stop_stirring",
|
80 |
+
"experiment": experiment,
|
81 |
+
"reactor": pioreactor
|
82 |
+
}
|
83 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
84 |
+
elif state == "update":
|
85 |
+
payload = {
|
86 |
+
"command": "update_stirring",
|
87 |
+
"experiment": experiment,
|
88 |
+
"reactor": pioreactor,
|
89 |
+
"rpm": rpm
|
90 |
+
}
|
91 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
92 |
+
else:
|
93 |
+
print("Invalid state")
|
94 |
+
|
95 |
+
def toggle_temperature_input(selected_option):
|
96 |
+
# Show the temperature slider only if "Heat To Temp" is selected
|
97 |
+
return gr.update(visible=selected_option == "Heat To Temp")
|
98 |
+
|
99 |
+
def temp_automation(temperature, host, port, username, password, pioreactor, experiment, state, option):
|
100 |
+
global client_custom
|
101 |
+
if client_custom is None:
|
102 |
+
custom_client(host, port, username, password)
|
103 |
+
|
104 |
+
payload_options = "thermostat" if option == "Heat To Temp" else "only_record_temperature"
|
105 |
+
|
106 |
+
if state == "start":
|
107 |
+
payload = {
|
108 |
+
"command": "set_temperature_automation",
|
109 |
+
"experiment": experiment,
|
110 |
+
"reactor": pioreactor,
|
111 |
+
"temp": temperature,
|
112 |
+
"automation": payload_options
|
113 |
+
}
|
114 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
115 |
+
elif state == "stop":
|
116 |
+
payload = {
|
117 |
+
"command": "temp_update",
|
118 |
+
"experiment": experiment,
|
119 |
+
"reactor": pioreactor,
|
120 |
+
"settings": {
|
121 |
+
"$state": "disconnected"
|
122 |
+
}
|
123 |
+
}
|
124 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
125 |
+
elif state == "update":
|
126 |
+
payload = {
|
127 |
+
"command": "temp_update",
|
128 |
+
"experiment": experiment,
|
129 |
+
"reactor": pioreactor,
|
130 |
+
"settings": {
|
131 |
+
"target_temperature": temperature
|
132 |
+
}
|
133 |
+
}
|
134 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
135 |
+
elif state == "restart":
|
136 |
+
payload = {
|
137 |
+
"command": "temp_restart",
|
138 |
+
"experiment": experiment,
|
139 |
+
"reactor": pioreactor,
|
140 |
+
"automation": payload_options,
|
141 |
+
"temp": temperature
|
142 |
+
}
|
143 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
144 |
+
else:
|
145 |
+
print("Invalid state")
|
146 |
+
|
147 |
+
def od(host, port, username, password, pioreactor, experiment, state):
|
148 |
+
global client_custom
|
149 |
+
if client_custom is None:
|
150 |
+
custom_client(host, port, username, password)
|
151 |
+
|
152 |
+
if state == "start":
|
153 |
+
payload = {
|
154 |
+
"command": "start_od_reading",
|
155 |
+
"experiment": experiment,
|
156 |
+
"reactor": pioreactor
|
157 |
+
}
|
158 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
159 |
+
elif state == "stop":
|
160 |
+
payload = {
|
161 |
+
"command": "stop_od_reading",
|
162 |
+
"experiment": experiment,
|
163 |
+
"reactor": pioreactor
|
164 |
+
}
|
165 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
166 |
+
else:
|
167 |
+
print("Invalid state")
|
168 |
+
|
169 |
+
def grf(host, port, username, password, pioreactor, experiment, state):
|
170 |
+
global client_custom
|
171 |
+
if client_custom is None:
|
172 |
+
custom_client(host, port, username, password)
|
173 |
+
|
174 |
+
if state == "start":
|
175 |
+
payload = {
|
176 |
+
"command": "start_growth_rate",
|
177 |
+
"experiment": experiment,
|
178 |
+
"reactor": pioreactor
|
179 |
+
}
|
180 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
181 |
+
elif state == "stop":
|
182 |
+
payload = {
|
183 |
+
"command": "stop_growth_rate",
|
184 |
+
"experiment": experiment,
|
185 |
+
"reactor": pioreactor
|
186 |
+
}
|
187 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
188 |
+
else:
|
189 |
+
print("Invalid state")
|
190 |
+
|
191 |
+
def led1fn(led1, host, port, username, password, pioreactor, experiment):
|
192 |
+
global client_custom
|
193 |
+
if client_custom is None:
|
194 |
+
custom_client(host, port, username, password)
|
195 |
+
|
196 |
+
payload = {
|
197 |
+
"command": "set_led_intensity",
|
198 |
+
"experiment": experiment,
|
199 |
+
"reactor": pioreactor,
|
200 |
+
"led": "A",
|
201 |
+
"brightness": led1
|
202 |
+
}
|
203 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
204 |
+
|
205 |
+
def led2fn(led2, host, port, username, password, pioreactor, experiment):
|
206 |
+
global client_custom
|
207 |
+
if client_custom is None:
|
208 |
+
custom_client(host, port, username, password)
|
209 |
+
|
210 |
+
payload = {
|
211 |
+
"command": "set_led_intensity",
|
212 |
+
"experiment": experiment,
|
213 |
+
"reactor": pioreactor,
|
214 |
+
"led": "B",
|
215 |
+
"brightness": led2
|
216 |
+
}
|
217 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
218 |
+
|
219 |
+
def led3fn(led3, host, port, username, password, pioreactor, experiment):
|
220 |
+
global client_custom
|
221 |
+
if client_custom is None:
|
222 |
+
custom_client(host, port, username, password)
|
223 |
+
|
224 |
+
payload = {
|
225 |
+
"command": "set_led_intensity",
|
226 |
+
"experiment": experiment,
|
227 |
+
"reactor": pioreactor,
|
228 |
+
"led": "C",
|
229 |
+
"brightness": led3
|
230 |
+
}
|
231 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
232 |
+
|
233 |
+
def led4fn(led4, host, port, username, password, pioreactor, experiment):
|
234 |
+
global client_custom
|
235 |
+
if client_custom is None:
|
236 |
+
custom_client(host, port, username, password)
|
237 |
+
|
238 |
+
payload = {
|
239 |
+
"command": "set_led_intensity",
|
240 |
+
"experiment": experiment,
|
241 |
+
"reactor": pioreactor,
|
242 |
+
"led": "D",
|
243 |
+
"brightness": led4
|
244 |
+
}
|
245 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
246 |
+
|
247 |
+
def add_media(media, host, port, username, password, pioreactor, experiment):
|
248 |
+
global client_custom
|
249 |
+
if client_custom is None:
|
250 |
+
custom_client(host, port, username, password)
|
251 |
+
|
252 |
+
payload = {
|
253 |
+
"command": "pump_add_media",
|
254 |
+
"experiment": experiment,
|
255 |
+
"reactor": pioreactor,
|
256 |
+
"volume": media
|
257 |
+
}
|
258 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
259 |
+
|
260 |
+
def remove_waste(waste, host, port, username, password, pioreactor, experiment):
|
261 |
+
global client_custom
|
262 |
+
if client_custom is None:
|
263 |
+
custom_client(host, port, username, password)
|
264 |
+
|
265 |
+
payload = {
|
266 |
+
"command": "pump_remove_media",
|
267 |
+
"experiment": experiment,
|
268 |
+
"reactor": pioreactor,
|
269 |
+
"volume": waste
|
270 |
+
}
|
271 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
272 |
+
|
273 |
+
def cycle_media(cycle, host, port, username, password, pioreactor, experiment):
|
274 |
+
global client_custom
|
275 |
+
if client_custom is None:
|
276 |
+
custom_client(host, port, username, password)
|
277 |
+
|
278 |
+
payload = {
|
279 |
+
"command": "circulate_media",
|
280 |
+
"experiment": experiment,
|
281 |
+
"reactor": pioreactor,
|
282 |
+
"duration": cycle
|
283 |
+
}
|
284 |
+
client_custom.publish(f"pioreactor/control", json.dumps(payload))
|
285 |
+
|
286 |
+
def void_client():
|
287 |
+
global client_custom
|
288 |
+
if client_custom is not None:
|
289 |
+
client_custom.disconnect()
|
290 |
+
client_custom = None
|
291 |
+
|
292 |
+
# Define the interface components
|
293 |
+
with gr.Blocks() as demo:
|
294 |
+
with gr.Tab("Default"):
|
295 |
+
experiment_input = gr.Textbox(label="Experiment", value="Ed")
|
296 |
+
experiment_input.input(fn=void_client)
|
297 |
+
|
298 |
+
with gr.Blocks():
|
299 |
+
gr.Markdown("# Stirring")
|
300 |
+
rpm = gr.Slider(minimum=0, maximum=2000, step=50, label="RPM")
|
301 |
+
|
302 |
+
with gr.Row():
|
303 |
+
stir_state = gr.Radio(choices=["start", "stop", "update"], label="State")
|
304 |
+
|
305 |
+
st = gr.Button("Send Command")
|
306 |
+
|
307 |
+
st.click(
|
308 |
+
fn=stirring,
|
309 |
+
inputs=[rpm, HOST_gr, PORT_gr, USERNAME_gr, PASSWORD_gr, PIOREACTOR_gr, experiment_input, stir_state]
|
310 |
+
)
|
311 |
+
|
312 |
+
with gr.Blocks():
|
313 |
+
gr.Markdown("# Temperature Automation")
|
314 |
+
|
315 |
+
# Dropdown for selecting automation type
|
316 |
+
temp_option = gr.Dropdown(
|
317 |
+
choices=["Record Temp Only", "Heat To Temp"],
|
318 |
+
label="Temperature Automation",
|
319 |
+
value="Record Temp Only"
|
320 |
+
)
|
321 |
+
|
322 |
+
# Slider for temperature (initially hidden)
|
323 |
+
temperature_slider = gr.Slider(minimum=0, maximum=60, step=1, label="Temperature", visible=False)
|
324 |
+
|
325 |
+
# Button to start automation
|
326 |
+
with gr.Row():
|
327 |
+
temp_state = gr.Radio(choices=["start", "stop", "update", "restart"], label="State")
|
328 |
+
temp = gr.Button("Send Command")
|
329 |
+
|
330 |
+
# Update visibility of the slider based on dropdown selection
|
331 |
+
temp_option.change(
|
332 |
+
fn=toggle_temperature_input,
|
333 |
+
inputs=temp_option,
|
334 |
+
outputs=temperature_slider
|
335 |
+
)
|
336 |
+
|
337 |
+
temp.click(
|
338 |
+
fn=temp_automation,
|
339 |
+
inputs=[temperature_slider, HOST_gr, PORT_gr, USERNAME_gr, PASSWORD_gr, PIOREACTOR_gr, experiment_input, temp_state, temp_option]
|
340 |
+
)
|
341 |
+
|
342 |
+
|
343 |
+
|
344 |
+
with gr.Tab("Custom"):
|
345 |
+
# Input components
|
346 |
+
with gr.Row():
|
347 |
+
host_input = gr.Textbox(label="Host")
|
348 |
+
port_input = gr.Number(label="Port")
|
349 |
+
|
350 |
+
host_input.input(fn=void_client)
|
351 |
+
port_input.input(fn=void_client)
|
352 |
+
|
353 |
+
with gr.Row():
|
354 |
+
username_input = gr.Textbox(label="Username")
|
355 |
+
password_input = gr.Textbox(label="Password")
|
356 |
+
pioreactor_input = gr.Textbox(label="Pioreactor")
|
357 |
+
experiment_input = gr.Textbox(label="Experiment")
|
358 |
+
|
359 |
+
username_input.input(fn=void_client)
|
360 |
+
password_input.input(fn=void_client)
|
361 |
+
pioreactor_input.input(fn=void_client)
|
362 |
+
experiment_input.input(fn=void_client)
|
363 |
+
|
364 |
+
with gr.Blocks():
|
365 |
+
gr.Markdown("# Stirring")
|
366 |
+
rpm_input = gr.Slider(minimum=0, maximum=2000, step=50, label="RPM")
|
367 |
+
|
368 |
+
with gr.Row():
|
369 |
+
stir_state = gr.Radio(choices=["start", "stop", "update"], label="State")
|
370 |
+
|
371 |
+
st = gr.Button("Send Command")
|
372 |
+
|
373 |
+
st.click(
|
374 |
+
fn=stirring,
|
375 |
+
inputs=[rpm_input, host_input, port_input, username_input, password_input, pioreactor_input, experiment_input, stir_state]
|
376 |
+
)
|
377 |
+
|
378 |
+
with gr.Blocks():
|
379 |
+
gr.Markdown("# Temperature Automation")
|
380 |
+
|
381 |
+
# Dropdown for selecting automation type
|
382 |
+
temp_option = gr.Dropdown(
|
383 |
+
choices=["Record Temp Only", "Heat To Temp"],
|
384 |
+
label="Temperature Automation",
|
385 |
+
value="Record Temp Only"
|
386 |
+
)
|
387 |
+
|
388 |
+
# Slider for temperature (initially hidden)
|
389 |
+
temperature_slider = gr.Slider(minimum=0, maximum=60, step=1, label="Temperature", visible=False)
|
390 |
+
|
391 |
+
# Button to start automation
|
392 |
+
with gr.Row():
|
393 |
+
temp_state = gr.Radio(choices=["start", "stop", "update", "restart"], label="State")
|
394 |
+
temp = gr.Button("Send Command")
|
395 |
+
|
396 |
+
# Update visibility of the slider based on dropdown selection
|
397 |
+
temp_option.change(
|
398 |
+
fn=toggle_temperature_input,
|
399 |
+
inputs=temp_option,
|
400 |
+
outputs=temperature_slider
|
401 |
+
)
|
402 |
+
|
403 |
+
temp.click(
|
404 |
+
fn=temp_automation,
|
405 |
+
inputs=[temperature_slider, host_input, port_input, username_input, password_input, pioreactor_input, experiment_input, temp_state, temp_option]
|
406 |
+
)
|
407 |
+
|
408 |
+
with gr.Blocks():
|
409 |
+
with gr.Row():
|
410 |
+
with gr.Column():
|
411 |
+
gr.Markdown("# OD Reading")
|
412 |
+
od_state = gr.Radio(choices=["start", "stop"], label="State")
|
413 |
+
od_button = gr.Button("Send Command")
|
414 |
+
|
415 |
+
od_button.click(
|
416 |
+
fn=od,
|
417 |
+
inputs=[host_input, port_input, username_input, password_input, pioreactor_input, experiment_input, od_state]
|
418 |
+
)
|
419 |
+
|
420 |
+
with gr.Column():
|
421 |
+
gr.Markdown("# Growth Rate")
|
422 |
+
gr_state = gr.Radio(choices=["start", "stop"], label="State")
|
423 |
+
gr_button = gr.Button("Send Command")
|
424 |
+
|
425 |
+
gr_button.click(
|
426 |
+
fn=grf,
|
427 |
+
inputs=[host_input, port_input, username_input, password_input, pioreactor_input, experiment_input, gr_state]
|
428 |
+
)
|
429 |
+
|
430 |
+
with gr.Blocks():
|
431 |
+
gr.Markdown("# LEDS")
|
432 |
+
|
433 |
+
with gr.Row(): # Row for all channels
|
434 |
+
with gr.Column():
|
435 |
+
gr.Markdown("### Channel A")
|
436 |
+
led1 = gr.Slider(minimum=0, maximum=100, step=1, label="Intensity")
|
437 |
+
led1_button = gr.Button("Send Command")
|
438 |
+
|
439 |
+
led1_button.click(
|
440 |
+
fn=led1fn,
|
441 |
+
inputs=[led1, host_input, port_input, username_input, password_input, pioreactor_input, experiment_input]
|
442 |
+
)
|
443 |
+
|
444 |
+
with gr.Column():
|
445 |
+
gr.Markdown("### Channel B")
|
446 |
+
led2 = gr.Slider(minimum=0, maximum=100, step=1, label="Intensity")
|
447 |
+
led2_button = gr.Button("Send Command")
|
448 |
+
|
449 |
+
led2_button.click(
|
450 |
+
fn=led2fn,
|
451 |
+
inputs=[led2, host_input, port_input, username_input, password_input, pioreactor_input, experiment_input]
|
452 |
+
)
|
453 |
+
|
454 |
+
with gr.Column():
|
455 |
+
gr.Markdown("### Channel C")
|
456 |
+
led3 = gr.Slider(minimum=0, maximum=100, step=1, label="Intensity")
|
457 |
+
led3_button = gr.Button("Send Command")
|
458 |
+
|
459 |
+
led3_button.click(
|
460 |
+
fn=led3fn,
|
461 |
+
inputs=[led3, host_input, port_input, username_input, password_input, pioreactor_input, experiment_input]
|
462 |
+
)
|
463 |
+
|
464 |
+
with gr.Column():
|
465 |
+
gr.Markdown("### Channel D")
|
466 |
+
led4 = gr.Slider(minimum=0, maximum=100, step=1, label="Intensity")
|
467 |
+
led4_button = gr.Button("Send Command")
|
468 |
+
|
469 |
+
led4_button.click(
|
470 |
+
fn=led4fn,
|
471 |
+
inputs=[led4, host_input, port_input, username_input, password_input, pioreactor_input, experiment_input]
|
472 |
+
)
|
473 |
+
|
474 |
+
with gr.Blocks():
|
475 |
+
gr.Markdown("# Dosing")
|
476 |
+
|
477 |
+
with gr.Row():
|
478 |
+
with gr.Column():
|
479 |
+
gr.Markdown("### Add Media")
|
480 |
+
|
481 |
+
add_media_ml = gr.Number(label="Media (mL)", step=1, minimum=0, maximum=14)
|
482 |
+
add_media_button = gr.Button("Send Command")
|
483 |
+
|
484 |
+
add_media_button.click(
|
485 |
+
fn=add_media,
|
486 |
+
inputs=[add_media_ml, host_input, port_input, username_input, password_input, pioreactor_input, experiment_input]
|
487 |
+
)
|
488 |
+
|
489 |
+
with gr.Column():
|
490 |
+
gr.Markdown("### Remove Waste")
|
491 |
+
|
492 |
+
remove_waste_ml = gr.Number(label="Waste (mL)", step=1, minimum=0, maximum=20)
|
493 |
+
remove_waste_button = gr.Button("Send Command")
|
494 |
+
|
495 |
+
remove_waste_button.click(
|
496 |
+
fn=remove_waste,
|
497 |
+
inputs=[remove_waste_ml, host_input, port_input, username_input, password_input, pioreactor_input, experiment_input]
|
498 |
+
)
|
499 |
+
|
500 |
+
with gr.Column():
|
501 |
+
gr.Markdown("### Cycle Media")
|
502 |
+
|
503 |
+
cycle_media_sec = gr.Number(label="Cycle (s)", step=1, minimum=0, maximum=60)
|
504 |
+
cycle_media_button = gr.Button("Send Command")
|
505 |
+
|
506 |
+
cycle_media_button.click(
|
507 |
+
fn=cycle_media,
|
508 |
+
inputs=[cycle_media_sec, host_input, port_input, username_input, password_input, pioreactor_input, experiment_input]
|
509 |
+
)
|
510 |
+
|
511 |
+
|
512 |
+
|
513 |
+
# Launch the interface
|
514 |
+
demo.launch()
|