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import pandas as pd |
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import joblib |
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from fastapi import FastAPI |
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import uvicorn |
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import numpy as np |
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import os |
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app = FastAPI() |
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def load_model(): |
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num_imputer_filepath = "numerical_imputer.joblib" |
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scaler_filepath = "scaler.joblib" |
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model_filepath = "lr_model.joblib" |
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num_imputer = joblib.load(num_imputer_filepath) |
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scaler = joblib.load(scaler_filepath) |
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model = joblib.load(model_filepath) |
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return num_imputer, scaler, model |
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def preprocess_input_data(input_data, num_imputer, scaler): |
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input_data_df = pd.DataFrame([input_data], index=[0]) |
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input_data_scaled = scaler.transform(input_data_df) |
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input_data_scaled = pd.DataFrame(input_data_scaled, columns=input_data_df.columns) |
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input_data_imputed = num_imputer.transform(input_data_scaled) |
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return input_data_imputed |
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@app.get("/") |
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def read_root(): |
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info = """ |
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Welcome to the Sepsis Prediction API! π©Ίπ. This API provides advanced machine learning predictions for sepsis. β‘π For more information and to explore the API's capabilities, please visit the documentation: https://abubakari-sepsis-fastapi-prediction-app.hf.space/docs/ |
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""" |
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return info.strip() |
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@app.get("/sepsis/predict") |
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def predict_sepsis_endpoint(PRG: float, PL: float, PR: float, SK: float, TS: float, |
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M11: float, BD2: float, Age: float, Insurance: int): |
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num_imputer, scaler, model = load_model() |
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input_data = { |
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'PRG': PRG, |
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'PL': PL, |
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'PR': PR, |
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'SK': SK, |
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'TS': TS, |
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'M11': M11, |
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'BD2': BD2, |
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'Age': Age, |
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'Insurance': Insurance |
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} |
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input_scaled_df = preprocess_input_data(input_data, num_imputer, scaler) |
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probabilities = model.predict_proba(input_scaled_df)[0] |
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prediction = np.argmax(probabilities) |
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sepsis_status = "Positive" if prediction == 1 else "Negative" |
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probability = probabilities[1] if prediction == 1 else probabilities[0] |
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if prediction == 1: |
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status_icon = "β" |
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sepsis_explanation = "Sepsis is a life-threatening condition caused by an infection. A positive prediction suggests that the patient might be exhibiting sepsis symptoms and requires immediate medical attention." |
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else: |
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status_icon = "β" |
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sepsis_explanation = "Sepsis is a life-threatening condition caused by an infection. A negative prediction suggests that the patient is not currently exhibiting sepsis symptoms." |
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statement = f"The patient's sepsis status is {sepsis_status} {status_icon} with a probability of {probability:.2f}. {sepsis_explanation}" |
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user_input_statement = "Please note this is the user-inputted data: " |
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output_df = pd.DataFrame([input_data]) |
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result = {'predicted_sepsis': sepsis_status, 'statement': statement, 'user_input_statement': user_input_statement, 'input_data_df': output_df.to_dict('records')} |
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return result |
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if __name__ == "__main__": |
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uvicorn.run(app, host="0.0.0.0", port=7860, reload=True) |
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