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scvi-tools
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tabula-sapiens-skin-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  1. adata.h5ad +2 -2
  2. lightning_logs/version_0/events.out.tfevents.1733432762.Yoseflab-R13B.329818.14 +3 -0
  3. lightning_logs/version_0/events.out.tfevents.1733433016.Yoseflab-R13B.329818.18 +3 -0
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  15. lightning_logs/version_0/events.out.tfevents.1733440432.Yoseflab-R13B.337477.54 +3 -0
  16. lightning_logs/version_0/events.out.tfevents.1733448122.Yoseflab-R13B.365372.57 +3 -0
  17. lightning_logs/version_0/events.out.tfevents.1733448725.Yoseflab-R13B.365372.63 +3 -0
  18. lightning_logs/version_0/hparams.yaml +1 -0
  19. lightning_logs/version_1/events.out.tfevents.1733434519.Yoseflab-R13B.337477.2 +3 -0
  20. lightning_logs/version_1/events.out.tfevents.1733441332.Yoseflab-R13B.365372.3 +3 -0
  21. lightning_logs/version_1/events.out.tfevents.1733441529.Yoseflab-R13B.365372.6 +3 -0
  22. lightning_logs/version_1/events.out.tfevents.1733441832.Yoseflab-R13B.365372.9 +3 -0
  23. lightning_logs/version_1/events.out.tfevents.1733442653.Yoseflab-R13B.365372.15 +3 -0
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  32. lightning_logs/version_1/events.out.tfevents.1733447267.Yoseflab-R13B.365372.51 +3 -0
  33. lightning_logs/version_1/hparams.yaml +1 -0
  34. lightning_logs/version_2/events.out.tfevents.1733442287.Yoseflab-R13B.365372.12 +3 -0
  35. lightning_logs/version_2/hparams.yaml +1 -0
  36. metrics.json +5 -0
  37. model.pt +2 -2
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 2.33 | 2.31 |\n| Pearson Correlation | 0.63 | 0.61 |\n| Spearman Correlation | 0.61 | 0.59 |\n| R\u00b2 (R-Squared) | 0.10 | 0.11 |",
3
+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 13.92 |\n| Pearson Correlation | 0.56 |\n| Spearman Correlation | 0.61 |\n| R\u00b2 (R-Squared) | -1.21 |",
4
+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| stromal cell | 0.90 | 1.29 | 0.70 | 0.95 | 0.46 | 0.90 | 2943.00 |\n| endothelial cell | 0.84 | 1.70 | 0.66 | 0.92 | 0.36 | 0.85 | 1309.00 |\n| CD8-positive, alpha-beta memory T cell | 0.88 | 3.52 | 0.61 | 0.77 | 0.23 | 0.76 | 857.00 |\n| macrophage | 0.87 | 2.46 | 0.61 | 0.84 | 0.28 | 0.84 | 846.00 |\n| mast cell | 0.90 | 3.31 | 0.61 | 0.79 | 0.20 | 0.75 | 645.00 |\n| mature NK T cell | 0.84 | 3.97 | 0.58 | 0.74 | 0.24 | 0.75 | 605.00 |\n| T cell | 0.91 | 4.45 | 0.56 | 0.70 | 0.22 | 0.73 | 519.00 |\n| muscle cell | 0.91 | 3.40 | 0.61 | 0.79 | 0.36 | 0.79 | 437.00 |\n| CD4-positive, alpha-beta memory T cell | 0.83 | 4.39 | 0.60 | 0.69 | 0.23 | 0.71 | 339.00 |\n| CD1c-positive myeloid dendritic cell | 0.81 | 4.54 | 0.61 | 0.72 | 0.29 | 0.82 | 165.00 |\n| CD8-positive, alpha-beta cytotoxic T cell | 0.80 | 5.81 | 0.52 | 0.54 | 0.31 | 0.71 | 129.00 |\n| regulatory T cell | 0.85 | 5.06 | 0.60 | 0.63 | 0.30 | 0.77 | 126.00 |\n| epithelial cell | 0.69 | 4.50 | 0.61 | 0.72 | 0.35 | 0.71 | 106.00 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 0.84 | 5.45 | 0.57 | 0.55 | 0.28 | 0.75 | 88.00 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 0.81 | 5.32 | 0.56 | 0.56 | 0.28 | 0.71 | 71.00 |\n| melanocyte | 0.71 | 6.10 | 0.53 | 0.57 | 0.38 | 0.73 | 64.00 |\n| CD4-positive helper T cell | 0.78 | 5.73 | 0.54 | 0.54 | 0.30 | 0.73 | 59.00 |\n| Langerhans cell | 0.70 | 5.94 | 0.54 | 0.56 | 0.37 | 0.75 | 36.00 |\n| plasma cell | 0.53 | 7.21 | 0.46 | 0.45 | 0.30 | 0.73 | 24.00 |\n| CD141-positive myeloid dendritic cell | 0.64 | 6.55 | 0.52 | 0.52 | 0.28 | 0.75 | 17.00 |\n| smooth muscle cell | 0.60 | 5.75 | 0.53 | 0.51 | 0.38 | 0.69 | 13.00 |"
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