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scvi-tools
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tabula-sapiens-muscle-condscvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:CondSCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -51,10 +51,10 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 2.47 | 2.54 |
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- | Pearson Correlation | 0.49 | 0.45 |
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- | Spearman Correlation | 0.42 | 0.39 |
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- | R² (R-Squared) | -0.40 | -0.50 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
@@ -63,10 +63,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 23.50 |
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  | Pearson Correlation | 0.75 |
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  | Spearman Correlation | 0.86 |
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- | R² (R-Squared) | -0.51 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | mesenchymal stem cell | 0.92 | 0.95 | 0.67 | 0.90 | 0.39 | 0.85 | 14148.00 |
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- | skeletal muscle satellite stem cell | 0.84 | 1.77 | 0.50 | 0.77 | 0.36 | 0.78 | 4831.00 |
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- | endothelial cell of vascular tree | 0.88 | 2.03 | 0.53 | 0.75 | 0.34 | 0.79 | 3602.00 |
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- | capillary endothelial cell | 0.91 | 2.68 | 0.53 | 0.68 | 0.33 | 0.76 | 2015.00 |
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- | macrophage | 0.88 | 2.79 | 0.50 | 0.73 | 0.39 | 0.83 | 1989.00 |
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- | pericyte | 0.88 | 2.64 | 0.55 | 0.69 | 0.39 | 0.76 | 1794.00 |
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- | CD8-positive, alpha-beta T cell | 0.79 | 5.74 | 0.48 | 0.57 | 0.28 | 0.80 | 536.00 |
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- | T cell | 0.85 | 5.41 | 0.48 | 0.50 | 0.37 | 0.78 | 407.00 |
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- | fast muscle cell | 0.92 | 6.68 | 0.50 | 0.47 | 0.34 | 0.91 | 266.00 |
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- | tendon cell | 0.64 | 5.28 | 0.47 | 0.43 | 0.40 | 0.67 | 234.00 |
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- | CD4-positive, alpha-beta T cell | 0.78 | 6.17 | 0.48 | 0.53 | 0.34 | 0.75 | 221.00 |
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- | slow muscle cell | 0.94 | 6.15 | 0.53 | 0.50 | 0.33 | 0.89 | 163.00 |
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- | mature NK T cell | 0.84 | 7.17 | 0.48 | 0.52 | 0.36 | 0.76 | 137.00 |
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- | endothelial cell of lymphatic vessel | 0.48 | 6.39 | 0.41 | 0.34 | 0.40 | 0.66 | 134.00 |
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- | endothelial cell of artery | 0.74 | 5.70 | 0.52 | 0.49 | 0.39 | 0.74 | 133.00 |
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- | smooth muscle cell | 0.79 | 5.64 | 0.55 | 0.50 | 0.38 | 0.76 | 58.00 |
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- | mast cell | 0.58 | 7.75 | 0.37 | 0.36 | 0.38 | 0.81 | 46.00 |
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- | erythrocyte | 0.09 | 5.27 | 0.20 | 0.39 | 0.64 | 0.98 | 20.00 |
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- | mesothelial cell | 0.18 | 7.71 | 0.36 | 0.27 | 0.38 | 0.72 | 12.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 2.49 | 2.55 |
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+ | Pearson Correlation | 0.48 | 0.45 |
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+ | Spearman Correlation | 0.42 | 0.40 |
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+ | R² (R-Squared) | -0.42 | -0.53 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 23.66 |
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  | Pearson Correlation | 0.75 |
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  | Spearman Correlation | 0.86 |
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+ | R² (R-Squared) | -0.57 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | mesenchymal stem cell | 0.92 | 0.95 | 0.68 | 0.90 | 0.39 | 0.85 | 14148.00 |
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+ | skeletal muscle satellite stem cell | 0.84 | 1.80 | 0.45 | 0.76 | 0.36 | 0.78 | 4831.00 |
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+ | endothelial cell of vascular tree | 0.89 | 2.10 | 0.50 | 0.75 | 0.35 | 0.79 | 3602.00 |
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+ | capillary endothelial cell | 0.91 | 2.68 | 0.50 | 0.69 | 0.32 | 0.75 | 2015.00 |
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+ | macrophage | 0.89 | 2.71 | 0.52 | 0.74 | 0.39 | 0.82 | 1989.00 |
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+ | pericyte | 0.89 | 2.66 | 0.54 | 0.69 | 0.38 | 0.76 | 1794.00 |
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+ | CD8-positive, alpha-beta T cell | 0.81 | 5.80 | 0.48 | 0.56 | 0.29 | 0.80 | 536.00 |
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+ | T cell | 0.87 | 5.44 | 0.47 | 0.50 | 0.37 | 0.78 | 407.00 |
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+ | fast muscle cell | 0.91 | 6.66 | 0.50 | 0.48 | 0.31 | 0.90 | 266.00 |
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+ | tendon cell | 0.68 | 5.07 | 0.50 | 0.45 | 0.38 | 0.66 | 234.00 |
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+ | CD4-positive, alpha-beta T cell | 0.77 | 6.24 | 0.47 | 0.52 | 0.35 | 0.75 | 221.00 |
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+ | slow muscle cell | 0.93 | 6.14 | 0.53 | 0.50 | 0.35 | 0.89 | 163.00 |
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+ | mature NK T cell | 0.83 | 6.98 | 0.49 | 0.52 | 0.36 | 0.76 | 137.00 |
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+ | endothelial cell of lymphatic vessel | 0.48 | 6.66 | 0.38 | 0.32 | 0.41 | 0.67 | 134.00 |
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+ | endothelial cell of artery | 0.70 | 5.38 | 0.56 | 0.54 | 0.38 | 0.73 | 133.00 |
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+ | smooth muscle cell | 0.78 | 5.82 | 0.54 | 0.49 | 0.40 | 0.77 | 58.00 |
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+ | mast cell | 0.62 | 7.62 | 0.37 | 0.35 | 0.40 | 0.81 | 46.00 |
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+ | erythrocyte | 0.14 | 5.19 | 0.25 | 0.41 | 0.53 | 0.96 | 20.00 |
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+ | mesothelial cell | 0.20 | 7.73 | 0.35 | 0.25 | 0.39 | 0.72 | 12.00 |
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  </details>
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