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scvi-tools
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tabula-sapiens-liver-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  20. lightning_logs/version_2/hparams.yaml +1 -0
  21. metrics.json +3 -3
  22. model.pt +1 -1
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- "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 2.12 | 2.08 |\n| Pearson Correlation | 0.48 | 0.52 |\n| Spearman Correlation | 0.41 | 0.48 |\n| R\u00b2 (R-Squared) | -0.36 | -0.49 |",
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- "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 8.46 |\n| Pearson Correlation | 0.56 |\n| Spearman Correlation | 0.55 |\n| R\u00b2 (R-Squared) | -1.14 |",
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- "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 0.94 | 1.23 | 0.60 | 0.93 | 0.26 | 0.76 | 1379.00 |\n| monocyte | 0.85 | 2.02 | 0.58 | 0.85 | 0.23 | 0.68 | 605.00 |\n| endothelial cell of hepatic sinusoid | 0.76 | 1.91 | 0.63 | 0.88 | 0.54 | 0.82 | 341.00 |\n| mature NK T cell | 0.81 | 3.00 | 0.60 | 0.87 | 0.48 | 0.83 | 231.00 |\n| neutrophil | 0.43 | 4.35 | 0.46 | 0.75 | 0.16 | 0.51 | 81.00 |\n| fibroblast | 0.66 | 2.72 | 0.66 | 0.84 | 0.54 | 0.77 | 70.00 |\n| hepatocyte | 0.68 | 4.20 | 0.62 | 0.84 | 0.40 | 0.81 | 67.00 |\n| liver dendritic cell | 0.57 | 5.17 | 0.55 | 0.49 | 0.33 | 0.47 | 34.00 |\n| T cell | 0.41 | 8.87 | 0.34 | 0.47 | 0.32 | 0.48 | 20.00 |\n| plasma cell | 0.53 | 6.28 | 0.53 | 0.50 | 0.32 | 0.54 | 19.00 |\n| intrahepatic cholangiocyte | 0.51 | 5.19 | 0.62 | 0.74 | 0.40 | 0.58 | 11.00 |\n| erythrocyte | 0.09 | 7.92 | 0.35 | 0.32 | 0.23 | 0.81 | 2.00 |"
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 2.12 | 2.22 |\n| Pearson Correlation | 0.50 | 0.54 |\n| Spearman Correlation | 0.40 | 0.38 |\n| R\u00b2 (R-Squared) | -0.24 | -0.29 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 8.48 |\n| Pearson Correlation | 0.55 |\n| Spearman Correlation | 0.56 |\n| R\u00b2 (R-Squared) | -1.14 |",
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+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 0.93 | 1.21 | 0.62 | 0.94 | 0.25 | 0.75 | 1379.00 |\n| monocyte | 0.85 | 2.11 | 0.56 | 0.84 | 0.24 | 0.68 | 605.00 |\n| endothelial cell of hepatic sinusoid | 0.75 | 1.94 | 0.62 | 0.89 | 0.54 | 0.82 | 341.00 |\n| mature NK T cell | 0.82 | 2.83 | 0.64 | 0.88 | 0.47 | 0.83 | 231.00 |\n| neutrophil | 0.44 | 4.37 | 0.45 | 0.76 | 0.16 | 0.51 | 81.00 |\n| fibroblast | 0.70 | 2.75 | 0.66 | 0.83 | 0.54 | 0.77 | 70.00 |\n| hepatocyte | 0.67 | 4.15 | 0.62 | 0.84 | 0.40 | 0.82 | 67.00 |\n| liver dendritic cell | 0.55 | 5.52 | 0.51 | 0.44 | 0.36 | 0.48 | 34.00 |\n| T cell | 0.46 | 8.35 | 0.40 | 0.51 | 0.31 | 0.48 | 20.00 |\n| plasma cell | 0.54 | 6.31 | 0.53 | 0.48 | 0.34 | 0.55 | 19.00 |\n| intrahepatic cholangiocyte | 0.54 | 4.95 | 0.64 | 0.74 | 0.39 | 0.58 | 11.00 |\n| erythrocyte | 0.24 | 8.16 | 0.33 | 0.29 | 0.23 | 0.80 | 2.00 |"
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