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adata.h5ad

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lightning_logs/version_0/hparams.yaml

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lightning_logs/version_1/hparams.yaml

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metrics.json

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 {
-    "cell_wise_cv": "| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 2.28  | 2.26           |\n| Pearson Correlation | 0.85  | 0.85  |\n| Spearman Correlation | 0.86 | 0.86  |\n| R\u00b2 (R-Squared) | 0.54  | 0.55      |",
-    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 12.58   |\n| Pearson Correlation | 0.61  |\n| Spearman Correlation | 0.68 |\n| R\u00b2 (R-Squared) | -0.87  |",
-    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 0.94 | 2.13 | 0.68 | 0.89 | 0.18 | 0.84 | 2911.00 |\n| CD4-positive, alpha-beta T cell | 0.93 | 1.95 | 0.62 | 0.91 | 0.34 | 0.79 | 2025.00 |\n| monocyte | 0.88 | 1.76 | 0.65 | 0.90 | 0.39 | 0.78 | 1389.00 |\n| CD8-positive, alpha-beta T cell | 0.87 | 3.04 | 0.55 | 0.84 | 0.32 | 0.74 | 1147.00 |\n| granulocyte | 0.77 | 2.38 | 0.64 | 0.89 | 0.45 | 0.83 | 853.00 |\n| plasma cell | 0.79 | 2.25 | 0.73 | 0.92 | 0.19 | 0.85 | 825.00 |\n| erythroid progenitor cell | 0.59 | 2.34 | 0.70 | 0.93 | 0.48 | 0.89 | 757.00 |\n| mature NK T cell | 0.78 | 3.76 | 0.58 | 0.78 | 0.33 | 0.69 | 678.00 |\n| hematopoietic stem cell | 0.90 | 2.20 | 0.67 | 0.89 | 0.53 | 0.85 | 617.00 |\n| memory B cell | 0.87 | 4.15 | 0.61 | 0.72 | 0.32 | 0.69 | 310.00 |\n| common myeloid progenitor | 0.70 | 2.72 | 0.70 | 0.89 | 0.55 | 0.88 | 287.00 |\n| macrophage | 0.85 | 4.31 | 0.64 | 0.71 | 0.34 | 0.78 | 265.00 |\n| naive B cell | 0.88 | 5.38 | 0.59 | 0.67 | 0.26 | 0.66 | 142.00 |\n| erythrocyte | 0.90 | 4.94 | 0.57 | 0.52 | 0.31 | 0.90 | 87.00 |"
+    "cell_wise_cv": "| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 2.29  | 2.31           |\n| Pearson Correlation | 0.85  | 0.84  |\n| Spearman Correlation | 0.86 | 0.85  |\n| R\u00b2 (R-Squared) | 0.54  | 0.57      |",
+    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 12.66   |\n| Pearson Correlation | 0.62  |\n| Spearman Correlation | 0.69 |\n| R\u00b2 (R-Squared) | -0.87  |",
+    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 0.94 | 1.88 | 0.72 | 0.90 | 0.18 | 0.84 | 2911.00 |\n| CD4-positive, alpha-beta T cell | 0.94 | 2.03 | 0.59 | 0.90 | 0.33 | 0.79 | 2025.00 |\n| monocyte | 0.89 | 1.68 | 0.68 | 0.90 | 0.39 | 0.77 | 1389.00 |\n| CD8-positive, alpha-beta T cell | 0.87 | 2.92 | 0.59 | 0.86 | 0.32 | 0.74 | 1147.00 |\n| granulocyte | 0.78 | 2.44 | 0.61 | 0.89 | 0.45 | 0.83 | 853.00 |\n| plasma cell | 0.80 | 2.29 | 0.72 | 0.92 | 0.19 | 0.85 | 825.00 |\n| erythroid progenitor cell | 0.61 | 2.36 | 0.70 | 0.92 | 0.49 | 0.89 | 757.00 |\n| mature NK T cell | 0.80 | 3.67 | 0.59 | 0.79 | 0.33 | 0.69 | 678.00 |\n| hematopoietic stem cell | 0.87 | 2.24 | 0.66 | 0.89 | 0.53 | 0.85 | 617.00 |\n| memory B cell | 0.85 | 4.27 | 0.59 | 0.71 | 0.32 | 0.69 | 310.00 |\n| common myeloid progenitor | 0.76 | 2.67 | 0.71 | 0.90 | 0.54 | 0.88 | 287.00 |\n| macrophage | 0.87 | 4.32 | 0.64 | 0.70 | 0.34 | 0.78 | 265.00 |\n| naive B cell | 0.91 | 5.25 | 0.60 | 0.67 | 0.26 | 0.66 | 142.00 |\n| erythrocyte | 0.91 | 4.97 | 0.57 | 0.52 | 0.31 | 0.90 | 87.00 |"
 }

model.pt

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