metrics.json

{
    "cell_wise_cv": "Modality: rna\n\n| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 0.56  | 0.57           |\n| Pearson Correlation | 0.76  | 0.75  |\n| Spearman Correlation | 0.83 | 0.83  |\n| R\u00b2 (R-Squared) | -0.10  | -0.09      |\n\nModality: protein\n\n| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 0.32  | 0.32           |\n| Pearson Correlation | 0.53  | 0.53  |\n| Spearman Correlation | 0.78 | 0.78  |\n| R\u00b2 (R-Squared) | -1.46  | -1.43      |\n\n",
    "gene_wise_cv": "Modality: rna\n\n| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 26.95   |\n| Pearson Correlation | 0.95  |\n| Spearman Correlation | 0.99 |\n| R\u00b2 (R-Squared) | -0.25  |\n\nModality: protein\n\n| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 4.31   |\n| Pearson Correlation | 0.40  |\n| Spearman Correlation | 0.73 |\n| R\u00b2 (R-Squared) | -6.52  |\n\n",
    "diff_exp": "Modality: rna\n\n| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| CD14-positive monocyte | 0.94 | 2.07 | 0.61 | 0.92 | 0.09 | 0.02 | 120843.00 |\n| CD16-positive, CD56-dim natural killer cell, human | 0.95 | 2.34 | 0.46 | 0.84 | 0.09 | 0.02 | 92848.00 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 0.90 | 2.79 | 0.38 | 0.75 | 0.09 | 0.02 | 63096.00 |\n| effector CD8-positive, alpha-beta T cell | 0.87 | 3.63 | 0.35 | 0.71 | 0.07 | 0.02 | 53534.00 |\n| central memory CD4-positive, alpha-beta T cell | 0.94 | 2.57 | 0.36 | 0.76 | 0.06 | 0.02 | 49904.00 |\n| naive B cell | 0.93 | 3.30 | 0.39 | 0.72 | 0.08 | 0.02 | 44136.00 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 0.92 | 3.52 | 0.38 | 0.66 | 0.06 | 0.02 | 31175.00 |\n| mature NK T cell | 0.91 | 3.68 | 0.43 | 0.62 | 0.04 | 0.01 | 21673.00 |\n| effector memory CD8-positive, alpha-beta T cell | 0.83 | 4.50 | 0.37 | 0.56 | 0.07 | 0.02 | 18917.00 |\n| T-helper 22 cell | 0.90 | 3.85 | 0.45 | 0.63 | 0.06 | 0.02 | 18379.00 |\n| gamma-delta T cell | 0.88 | 4.70 | 0.36 | 0.48 | 0.05 | 0.01 | 15942.00 |\n| platelet | 0.88 | 4.59 | 0.49 | 0.66 | 0.06 | 0.02 | 15847.00 |\n| T follicular helper cell | 0.93 | 4.34 | 0.43 | 0.56 | 0.06 | 0.02 | 13608.00 |\n| mucosal invariant T cell | 0.87 | 4.99 | 0.40 | 0.46 | 0.05 | 0.02 | 10992.00 |\n| CD16-negative, CD56-bright natural killer cell, human | 0.85 | 5.20 | 0.40 | 0.45 | 0.05 | 0.02 | 10442.00 |\n| class switched memory B cell | 0.90 | 5.24 | 0.45 | 0.50 | 0.07 | 0.02 | 7244.00 |\n| immature B cell | 0.89 | 5.51 | 0.46 | 0.46 | 0.10 | 0.02 | 5238.00 |\n| natural killer cell | 0.87 | 5.37 | 0.44 | 0.43 | 0.08 | 0.02 | 4963.00 |\n| plasmacytoid dendritic cell | 0.91 | 5.44 | 0.43 | 0.42 | 0.05 | 0.02 | 4612.00 |\n| CD14-low, CD16-positive monocyte | 0.91 | 4.45 | 0.57 | 0.58 | 0.11 | 0.02 | 4140.00 |\n| plasmablast | 0.80 | 5.08 | 0.51 | 0.53 | 0.10 | 0.02 | 4121.00 |\n| IgG plasma cell | 0.69 | 5.06 | 0.51 | 0.52 | 0.11 | 0.01 | 3527.00 |\n| dendritic cell, human | 0.84 | 5.00 | 0.45 | 0.45 | 0.62 | 0.20 | 3357.00 |\n| unswitched memory B cell | 0.92 | 5.52 | 0.45 | 0.42 | 0.18 | 0.02 | 3285.00 |\n| myeloid dendritic cell | 0.83 | 5.30 | 0.49 | 0.46 | 0.13 | 0.02 | 3243.00 |\n| B cell | 0.86 | 4.98 | 0.52 | 0.49 | 0.17 | 0.02 | 3024.00 |\n| IgA plasma cell | 0.73 | 5.01 | 0.52 | 0.51 | 0.12 | 0.02 | 2699.00 |\n| effector memory CD4-positive, alpha-beta T cell | 0.87 | 5.16 | 0.48 | 0.41 | 0.12 | 0.02 | 2634.00 |\n| malignant cell | 0.94 | 5.63 | 0.45 | 0.40 | 0.29 | 0.02 | 2291.00 |\n| CD34-positive, CD38-negative hematopoietic stem cell | 0.77 | 5.45 | 0.49 | 0.50 | 0.13 | 0.02 | 2238.00 |\n| erythrocyte | 0.76 | 5.49 | 0.42 | 0.26 | 0.62 | 0.32 | 2232.00 |\n| CD8-positive, alpha-beta T cell | 0.85 | 5.34 | 0.48 | 0.39 | 0.29 | 0.02 | 1355.00 |\n| IgM plasma cell | 0.76 | 4.54 | 0.55 | 0.52 | 0.28 | 0.02 | 1163.00 |\n| ILC1, human | 0.83 | 4.68 | 0.51 | 0.47 | 0.41 | 0.03 | 776.00 |\n| erythroid progenitor cell, mammalian | 0.70 | 5.47 | 0.52 | 0.47 | 0.33 | 0.02 | 773.00 |\n| monocyte | 0.87 | 4.12 | 0.58 | 0.51 | 0.38 | 0.02 | 649.00 |\n| CD4-positive, alpha-beta T cell | 0.84 | 4.62 | 0.54 | 0.50 | 0.30 | 0.02 | 624.00 |\n| dendritic cell | 0.73 | 5.21 | 0.50 | 0.41 | 0.48 | 0.03 | 585.00 |\n| T-helper 1 cell | 0.87 | 3.82 | 0.59 | 0.54 | 0.30 | 0.02 | 481.00 |\n| regulatory T cell | 0.78 | 3.98 | 0.55 | 0.53 | 0.36 | 0.02 | 329.00 |\n| hematopoietic precursor cell | 0.71 | 4.50 | 0.58 | 0.55 | 0.31 | 0.02 | 180.00 |\n| group 2 innate lymphoid cell, human | 0.71 | 3.33 | 0.54 | 0.59 | 0.28 | 0.02 | 93.00 |\n| T-helper 2 cell | 0.65 | 2.99 | 0.58 | 0.64 | 0.21 | 0.02 | 55.00 |\n| myeloid lineage restricted progenitor cell | 0.56 | 3.74 | 0.55 | 0.58 | 0.24 | 0.02 | 53.00 |\n| megakaryocyte | 0.67 | 3.68 | 0.61 | 0.60 | 0.25 | 0.02 | 53.00 |\n| T-helper 17 cell | 0.47 | 2.48 | 0.54 | 0.69 | 0.17 | 0.02 | 13.00 |\n\nModality: protein\n\n| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| CD14-positive monocyte | 0.95 | 0.07 | 1.00 | 0.99 | 0.26 | 0.12 | 120843.00 |\n| CD16-positive, CD56-dim natural killer cell, human | 0.95 | 0.06 | 0.99 | 0.97 | 0.22 | 0.12 | 92848.00 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 0.84 | 0.06 | 0.99 | 0.98 | 0.37 | 0.13 | 63096.00 |\n| effector CD8-positive, alpha-beta T cell | 1.00 | 0.05 | 0.99 | 0.97 | 0.17 | 0.09 | 53534.00 |\n| central memory CD4-positive, alpha-beta T cell | 1.00 | 0.06 | 1.00 | 0.99 | 0.33 | 0.13 | 49904.00 |\n| naive B cell | 1.00 | 0.08 | 1.00 | 0.96 | 0.20 | 0.12 | 44136.00 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 0.95 | 0.07 | 0.99 | 0.95 | 0.13 | 0.11 | 31175.00 |\n| mature NK T cell | 0.95 | 0.06 | 0.99 | 0.97 | 0.21 | 0.10 | 21673.00 |\n| effector memory CD8-positive, alpha-beta T cell | 0.84 | 0.05 | 0.99 | 0.98 | 0.06 | 0.11 | 18917.00 |\n| T-helper 22 cell | 0.95 | 0.06 | 0.99 | 0.98 | 0.11 | 0.08 | 18379.00 |\n| gamma-delta T cell | 0.89 | 0.06 | 0.97 | 0.94 | 0.26 | 0.18 | 15942.00 |\n| platelet | 0.84 | 0.10 | 0.97 | 0.94 | 0.21 | 0.11 | 15847.00 |\n| T follicular helper cell | 1.00 | 0.07 | 1.00 | 0.99 | 0.24 | 0.12 | 13608.00 |\n| mucosal invariant T cell | 0.89 | 0.08 | 0.97 | 0.95 | 0.15 | 0.09 | 10992.00 |\n| CD16-negative, CD56-bright natural killer cell, human | 0.95 | 0.08 | 0.98 | 0.95 | 0.44 | 0.47 | 10442.00 |\n| class switched memory B cell | 0.89 | 0.09 | 0.99 | 0.97 | 0.11 | 0.12 | 7244.00 |\n| immature B cell | 0.89 | 0.12 | 0.98 | 0.92 | 0.25 | 0.13 | 5238.00 |\n| natural killer cell | 0.79 | 0.06 | 0.98 | 0.98 | 0.68 | 0.68 | 4963.00 |\n| plasmacytoid dendritic cell | 0.79 | 0.09 | 0.98 | 0.97 | 0.54 | 0.56 | 4612.00 |\n| CD14-low, CD16-positive monocyte | 0.89 | 0.08 | 0.99 | 0.98 | 0.57 | 0.23 | 4140.00 |\n| plasmablast | 0.79 | 0.08 | 0.99 | 0.97 | 0.47 | 0.48 | 4121.00 |\n| IgG plasma cell | 0.89 | 0.08 | 0.98 | 0.95 | 0.47 | 0.51 | 3527.00 |\n| dendritic cell, human | 0.79 | 0.10 | 0.97 | 0.91 | 0.94 | 0.89 | 3357.00 |\n| unswitched memory B cell | 0.95 | 0.10 | 0.99 | 0.94 | 0.63 | 0.61 | 3285.00 |\n| myeloid dendritic cell | 0.89 | 0.11 | 0.97 | 0.94 | 0.74 | 0.74 | 3243.00 |\n| B cell | 0.89 | 0.10 | 0.98 | 0.93 | 0.58 | 0.59 | 3024.00 |\n| IgA plasma cell | 0.89 | 0.10 | 0.97 | 0.92 | 0.47 | 0.48 | 2699.00 |\n| effector memory CD4-positive, alpha-beta T cell | 0.95 | 0.07 | 0.99 | 0.95 | 0.79 | 0.80 | 2634.00 |\n| malignant cell | 0.89 | 0.08 | 0.99 | 0.99 | 0.17 | 0.08 | 2291.00 |\n| CD34-positive, CD38-negative hematopoietic stem cell | 0.79 | 0.10 | 0.95 | 0.93 | 0.37 | 0.34 | 2238.00 |\n| erythrocyte | 0.84 | 0.07 | 0.99 | 0.98 | 0.21 | 0.25 | 2232.00 |\n| CD8-positive, alpha-beta T cell | 0.58 | 0.09 | 0.93 | 0.87 | 0.68 | 0.50 | 1355.00 |\n| IgM plasma cell | 0.95 | 0.09 | 0.99 | 0.95 | 0.42 | 0.46 | 1163.00 |\n| ILC1, human | 0.79 | 0.09 | 0.97 | 0.89 | 0.53 | 0.55 | 776.00 |\n| erythroid progenitor cell, mammalian | 0.58 | 0.15 | 0.94 | 0.91 | 0.22 | 0.22 | 773.00 |\n| monocyte | 0.84 | 0.10 | 0.96 | 0.94 | 0.68 | 0.68 | 649.00 |\n| CD4-positive, alpha-beta T cell | 0.84 | 0.11 | 0.96 | 0.88 | 0.58 | 0.59 | 624.00 |\n| dendritic cell | 0.74 | 0.20 | 0.84 | 0.79 | 0.53 | 0.44 | 585.00 |\n| T-helper 1 cell | 0.84 | 0.09 | 0.99 | 0.97 | 0.73 | 0.71 | 481.00 |\n| regulatory T cell | 0.84 | 0.15 | 0.93 | 0.92 | 0.89 | 0.84 | 329.00 |\n| hematopoietic precursor cell | 0.63 | 0.28 | 0.29 | 0.89 | 0.35 | 0.27 | 180.00 |\n| group 2 innate lymphoid cell, human | 0.58 | 0.23 | 0.99 | 0.62 | 0.32 | 0.33 | 93.00 |\n| T-helper 2 cell | 0.79 | 0.24 | 0.91 | 0.76 | 0.73 | 0.68 | 55.00 |\n| myeloid lineage restricted progenitor cell | 0.42 | 0.39 | 0.17 | 0.77 | 0.54 | 0.26 | 53.00 |\n| megakaryocyte | 0.63 | 0.25 | 0.98 | 0.76 | 0.54 | 0.46 | 53.00 |\n| T-helper 17 cell | 0.79 | 0.66 | 0.17 | 0.70 | 0.57 | 0.36 | 13.00 |\n\n"
}