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tabula_sapiens_Vasculature

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popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Vasculature
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@@ -32,27 +32,27 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | fibroblast | 1262 | 0.98 | 0.97 | 0.98 | 0.97 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |
36
- | smooth muscle cell | 855 | 0.92 | 0.92 | 0.95 | 0.91 | 0.00 | 0.92 | 0.92 | 0.93 | 0.93 |
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- | macrophage | 753 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.95 | 0.97 | 0.98 | 0.98 |
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- | endothelial cell | 276 | 0.80 | 0.65 | 0.77 | 0.59 | 0.00 | 0.70 | 0.86 | 0.87 | 0.88 |
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- | capillary endothelial cell | 197 | 0.73 | 0.62 | 0.68 | 0.51 | 0.00 | 0.58 | 0.76 | 0.80 | 0.77 |
40
- | pericyte | 185 | 0.79 | 0.80 | 0.86 | 0.75 | 0.00 | 0.79 | 0.78 | 0.79 | 0.82 |
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- | CD8-positive, alpha-beta T cell | 163 | 0.64 | 0.75 | 0.75 | 0.63 | 0.00 | 0.72 | 0.66 | 0.70 | 0.72 |
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- | neutrophil | 131 | 1.00 | 1.00 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | vein endothelial cell | 78 | 0.65 | 0.40 | 0.54 | 0.28 | 0.00 | 0.56 | 0.68 | 0.72 | 0.75 |
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- | CD4-positive, alpha-beta T cell | 87 | 0.73 | 0.80 | 0.79 | 0.63 | 0.00 | 0.82 | 0.77 | 0.78 | 0.80 |
45
- | endothelial cell of artery | 61 | 0.82 | 0.88 | 0.88 | 0.69 | 0.00 | 0.72 | 0.79 | 0.81 | 0.84 |
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- | mature NK T cell | 50 | 0.64 | 0.70 | 0.61 | 0.39 | 0.00 | 0.62 | 0.61 | 0.67 | 0.66 |
47
- | monocyte | 46 | 0.90 | 0.89 | 0.90 | 0.86 | 0.00 | 0.70 | 0.81 | 0.82 | 0.87 |
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- | basophil | 23 | 0.65 | 0.81 | 0.64 | 0.81 | 0.00 | 0.98 | 0.98 | 0.98 | 0.92 |
49
- | natural killer cell | 17 | 0.38 | 0.39 | 0.35 | 0.14 | 0.00 | 0.47 | 0.44 | 0.50 | 0.45 |
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- | endothelial cell of lymphatic vessel | 23 | 0.98 | 0.98 | 1.00 | 0.96 | 0.00 | 0.87 | 0.96 | 0.96 | 0.98 |
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- | mast cell | 20 | 0.00 | 0.74 | 0.47 | 0.78 | 0.00 | 0.93 | 0.95 | 0.92 | 0.92 |
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- | B cell | 14 | 0.85 | 0.85 | 0.85 | 0.86 | 0.00 | 0.93 | 1.00 | 0.79 | 0.92 |
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- | erythrocyte | 7 | 0.88 | 0.88 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.82 | 1.00 |
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- | plasma cell | 9 | 0.88 | 0.80 | 0.94 | 0.88 | 0.00 | 0.84 | 1.00 | 0.88 | 1.00 |
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- | T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -62,31 +62,31 @@ The train accuracies are computed on the training data.
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63
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
64
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | fibroblast | 11433 | 0.97 | 0.95 | 0.99 | 0.99 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |
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- | smooth muscle cell | 7732 | 0.92 | 0.90 | 0.97 | 0.96 | 0.00 | 0.92 | 0.92 | 0.92 | 0.95 |
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- | macrophage | 6764 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.95 | 0.98 | 0.97 | 0.98 |
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- | endothelial cell | 2410 | 0.77 | 0.59 | 0.83 | 0.78 | 0.00 | 0.87 | 0.87 | 0.88 | 0.92 |
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- | capillary endothelial cell | 1838 | 0.72 | 0.61 | 0.78 | 0.74 | 0.00 | 0.79 | 0.83 | 0.85 | 0.89 |
70
- | pericyte | 1586 | 0.79 | 0.81 | 0.92 | 0.88 | 0.00 | 0.82 | 0.81 | 0.81 | 0.88 |
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- | CD8-positive, alpha-beta T cell | 1369 | 0.69 | 0.72 | 0.81 | 0.75 | 0.00 | 0.79 | 0.84 | 0.86 | 0.83 |
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- | neutrophil | 1309 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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- | vein endothelial cell | 797 | 0.60 | 0.30 | 0.67 | 0.58 | 0.00 | 0.78 | 0.79 | 0.80 | 0.83 |
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- | CD4-positive, alpha-beta T cell | 641 | 0.70 | 0.73 | 0.77 | 0.67 | 0.00 | 0.81 | 0.84 | 0.88 | 0.83 |
75
- | endothelial cell of artery | 584 | 0.77 | 0.78 | 0.88 | 0.78 | 0.00 | 0.78 | 0.83 | 0.85 | 0.87 |
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- | mature NK T cell | 465 | 0.70 | 0.69 | 0.75 | 0.60 | 0.00 | 0.76 | 0.88 | 0.88 | 0.82 |
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- | monocyte | 381 | 0.81 | 0.84 | 0.88 | 0.82 | 0.00 | 0.68 | 0.79 | 0.80 | 0.87 |
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- | basophil | 221 | 0.72 | 0.72 | 0.79 | 0.92 | 0.00 | 0.96 | 0.99 | 0.99 | 0.97 |
79
- | natural killer cell | 225 | 0.52 | 0.52 | 0.61 | 0.44 | 0.00 | 0.78 | 0.89 | 0.91 | 0.87 |
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- | endothelial cell of lymphatic vessel | 175 | 0.95 | 0.96 | 0.97 | 0.93 | 0.00 | 0.89 | 0.97 | 0.94 | 0.96 |
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- | mast cell | 139 | 0.00 | 0.50 | 0.65 | 0.82 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
82
- | B cell | 134 | 0.97 | 0.97 | 0.97 | 0.91 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |
83
- | erythrocyte | 76 | 0.92 | 0.91 | 0.97 | 0.97 | 0.00 | 0.91 | 0.98 | 0.93 | 0.96 |
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- | plasma cell | 59 | 0.92 | 0.90 | 0.98 | 0.77 | 0.00 | 0.97 | 0.99 | 1.00 | 1.00 |
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- | T cell | 16 | 0.00 | 0.00 | 0.54 | 0.62 | 0.00 | 0.41 | 0.97 | 0.97 | 0.88 |
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- | intermediate monocyte | 13 | 0.00 | 0.00 | 0.12 | 0.27 | 0.00 | 0.18 | 1.00 | 1.00 | 0.82 |
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- | classical monocyte | 12 | 0.00 | 0.00 | 0.60 | 0.67 | 0.00 | 0.60 | 1.00 | 1.00 | 0.91 |
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- | myeloid dendritic cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.09 | 1.00 | 0.62 | 0.00 |
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- | non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |
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91
  </details>
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32
 
33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | fibroblast | 1255 | 0.97 | 0.96 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |
36
+ | smooth muscle cell | 847 | 0.91 | 0.92 | 0.95 | 0.93 | 0.00 | 0.90 | 0.91 | 0.92 | 0.94 |
37
+ | macrophage | 763 | 0.98 | 0.97 | 0.98 | 0.98 | 0.00 | 0.94 | 0.98 | 0.98 | 0.99 |
38
+ | endothelial cell | 272 | 0.79 | 0.65 | 0.79 | 0.68 | 0.00 | 0.77 | 0.84 | 0.87 | 0.89 |
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+ | capillary endothelial cell | 193 | 0.75 | 0.62 | 0.65 | 0.57 | 0.00 | 0.66 | 0.72 | 0.77 | 0.78 |
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+ | pericyte | 184 | 0.78 | 0.84 | 0.87 | 0.79 | 0.00 | 0.75 | 0.77 | 0.79 | 0.85 |
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+ | CD8-positive, alpha-beta T cell | 161 | 0.61 | 0.69 | 0.73 | 0.59 | 0.00 | 0.66 | 0.62 | 0.70 | 0.68 |
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+ | neutrophil | 136 | 1.00 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |
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+ | vein endothelial cell | 78 | 0.65 | 0.37 | 0.50 | 0.36 | 0.00 | 0.52 | 0.63 | 0.67 | 0.71 |
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+ | CD4-positive, alpha-beta T cell | 87 | 0.69 | 0.76 | 0.71 | 0.45 | 0.00 | 0.78 | 0.73 | 0.79 | 0.77 |
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+ | endothelial cell of artery | 63 | 0.83 | 0.85 | 0.90 | 0.74 | 0.00 | 0.76 | 0.82 | 0.83 | 0.87 |
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+ | mature NK T cell | 57 | 0.68 | 0.70 | 0.61 | 0.35 | 0.00 | 0.69 | 0.67 | 0.68 | 0.69 |
47
+ | monocyte | 45 | 0.88 | 0.85 | 0.88 | 0.87 | 0.00 | 0.72 | 0.83 | 0.81 | 0.88 |
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+ | basophil | 22 | 0.68 | 0.78 | 0.58 | 0.76 | 0.00 | 0.90 | 1.00 | 0.93 | 0.94 |
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+ | natural killer cell | 23 | 0.44 | 0.44 | 0.35 | 0.13 | 0.00 | 0.54 | 0.35 | 0.54 | 0.51 |
50
+ | endothelial cell of lymphatic vessel | 22 | 0.98 | 0.98 | 0.95 | 0.82 | 0.00 | 0.70 | 0.98 | 0.96 | 0.98 |
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+ | mast cell | 17 | 0.00 | 0.69 | 0.46 | 0.74 | 0.00 | 0.87 | 0.97 | 0.89 | 0.94 |
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+ | B cell | 16 | 0.93 | 0.90 | 0.93 | 0.72 | 0.00 | 0.88 | 1.00 | 0.91 | 0.97 |
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+ | erythrocyte | 7 | 1.00 | 0.93 | 1.00 | 1.00 | 0.00 | 0.78 | 1.00 | 1.00 | 1.00 |
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+ | plasma cell | 6 | 1.00 | 0.91 | 1.00 | 0.50 | 0.00 | 0.77 | 1.00 | 0.80 | 1.00 |
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+ | T cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
57
  | classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
58
  | myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
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63
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
64
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
65
+ | fibroblast | 11440 | 0.97 | 0.95 | 0.99 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |
66
+ | smooth muscle cell | 7740 | 0.90 | 0.89 | 0.97 | 0.96 | 0.00 | 0.91 | 0.92 | 0.92 | 0.94 |
67
+ | macrophage | 6754 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.94 | 0.98 | 0.97 | 0.99 |
68
+ | endothelial cell | 2414 | 0.76 | 0.59 | 0.82 | 0.81 | 0.00 | 0.90 | 0.87 | 0.88 | 0.92 |
69
+ | capillary endothelial cell | 1842 | 0.75 | 0.61 | 0.77 | 0.76 | 0.00 | 0.84 | 0.82 | 0.85 | 0.88 |
70
+ | pericyte | 1587 | 0.77 | 0.80 | 0.92 | 0.87 | 0.00 | 0.76 | 0.81 | 0.81 | 0.87 |
71
+ | CD8-positive, alpha-beta T cell | 1371 | 0.70 | 0.73 | 0.81 | 0.75 | 0.00 | 0.77 | 0.84 | 0.86 | 0.83 |
72
+ | neutrophil | 1303 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
73
+ | vein endothelial cell | 797 | 0.60 | 0.31 | 0.67 | 0.63 | 0.00 | 0.77 | 0.76 | 0.78 | 0.82 |
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+ | CD4-positive, alpha-beta T cell | 640 | 0.70 | 0.73 | 0.76 | 0.61 | 0.00 | 0.79 | 0.85 | 0.88 | 0.83 |
75
+ | endothelial cell of artery | 582 | 0.78 | 0.79 | 0.88 | 0.81 | 0.00 | 0.81 | 0.85 | 0.86 | 0.88 |
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+ | mature NK T cell | 458 | 0.67 | 0.70 | 0.76 | 0.49 | 0.00 | 0.82 | 0.87 | 0.87 | 0.84 |
77
+ | monocyte | 382 | 0.84 | 0.85 | 0.88 | 0.87 | 0.00 | 0.71 | 0.81 | 0.78 | 0.88 |
78
+ | basophil | 222 | 0.72 | 0.75 | 0.80 | 0.94 | 0.00 | 0.96 | 0.99 | 0.98 | 0.97 |
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+ | natural killer cell | 219 | 0.52 | 0.49 | 0.58 | 0.39 | 0.00 | 0.72 | 0.87 | 0.90 | 0.88 |
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+ | endothelial cell of lymphatic vessel | 176 | 0.95 | 0.95 | 0.96 | 0.90 | 0.00 | 0.78 | 0.98 | 0.98 | 0.96 |
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+ | mast cell | 142 | 0.00 | 0.52 | 0.70 | 0.91 | 0.00 | 0.96 | 1.00 | 0.99 | 0.98 |
82
+ | B cell | 132 | 0.96 | 0.96 | 0.96 | 0.94 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |
83
+ | erythrocyte | 76 | 0.91 | 0.90 | 0.97 | 0.99 | 0.00 | 0.89 | 0.98 | 0.96 | 0.98 |
84
+ | plasma cell | 62 | 0.90 | 0.88 | 0.97 | 0.91 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
85
+ | T cell | 15 | 0.00 | 0.00 | 0.61 | 0.21 | 0.00 | 0.46 | 1.00 | 0.91 | 0.80 |
86
+ | intermediate monocyte | 13 | 0.00 | 0.00 | 0.29 | 0.14 | 0.00 | 0.17 | 1.00 | 0.93 | 0.82 |
87
+ | classical monocyte | 12 | 0.00 | 0.00 | 0.40 | 0.54 | 0.00 | 0.77 | 1.00 | 0.96 | 0.91 |
88
+ | myeloid dendritic cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.83 | 0.62 | 0.00 |
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+ | non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 1.00 | 1.00 | 1.00 |
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91
  </details>
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