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@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
+faiss_index.faiss filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 1246 | 0.97 | 0.96 | 0.98 | 0.97 | 0.00 | 0.94 | 0.97 | 0.97 | 0.97 |\n| smooth muscle cell | 852 | 0.92 | 0.92 | 0.96 | 0.92 | 0.00 | 0.90 | 0.91 | 0.91 | 0.93 |\n| macrophage | 763 | 0.98 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| endothelial cell | 282 | 0.79 | 0.68 | 0.77 | 0.71 | 0.00 | 0.73 | 0.86 | 0.87 | 0.88 |\n| capillary endothelial cell | 195 | 0.70 | 0.62 | 0.68 | 0.60 | 0.00 | 0.59 | 0.73 | 0.77 | 0.77 |\n| pericyte | 183 | 0.81 | 0.81 | 0.91 | 0.80 | 0.00 | 0.75 | 0.77 | 0.77 | 0.84 |\n| CD8-positive, alpha-beta T cell | 158 | 0.66 | 0.65 | 0.73 | 0.66 | 0.00 | 0.70 | 0.64 | 0.68 | 0.70 |\n| neutrophil | 135 | 1.00 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 1.00 | 0.98 | 1.00 |\n| vein endothelial cell | 77 | 0.64 | 0.32 | 0.50 | 0.38 | 0.00 | 0.52 | 0.62 | 0.69 | 0.66 |\n| CD4-positive, alpha-beta T cell | 90 | 0.74 | 0.72 | 0.80 | 0.53 | 0.00 | 0.80 | 0.73 | 0.76 | 0.79 |\n| endothelial cell of artery | 63 | 0.82 | 0.83 | 0.84 | 0.72 | 0.00 | 0.73 | 0.79 | 0.83 | 0.86 |\n| mature NK T cell | 54 | 0.69 | 0.73 | 0.62 | 0.62 | 0.00 | 0.70 | 0.69 | 0.68 | 0.71 |\n| monocyte | 43 | 0.88 | 0.82 | 0.86 | 0.77 | 0.00 | 0.75 | 0.76 | 0.78 | 0.86 |\n| basophil | 22 | 0.65 | 0.78 | 0.37 | 0.84 | 0.00 | 0.96 | 1.00 | 0.95 | 0.92 |\n| natural killer cell | 20 | 0.41 | 0.33 | 0.27 | 0.24 | 0.00 | 0.23 | 0.40 | 0.46 | 0.44 |\n| endothelial cell of lymphatic vessel | 21 | 0.95 | 0.98 | 0.98 | 0.95 | 0.00 | 1.00 | 0.95 | 0.93 | 0.98 |\n| mast cell | 19 | 0.00 | 0.71 | 0.52 | 0.84 | 0.00 | 0.95 | 0.97 | 0.92 | 0.91 |\n| B cell | 15 | 0.93 | 0.93 | 0.89 | 0.84 | 0.00 | 0.91 | 1.00 | 0.84 | 0.93 |\n| erythrocyte | 8 | 1.00 | 0.94 | 0.94 | 1.00 | 0.00 | 0.84 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 10 | 0.95 | 0.95 | 0.90 | 0.86 | 0.00 | 0.86 | 0.95 | 0.84 | 0.95 |\n| T cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 11449 | 0.97 | 0.95 | 0.99 | 0.98 | 0.00 | 0.94 | 0.97 | 0.97 | 0.97 |\n| smooth muscle cell | 7735 | 0.91 | 0.90 | 0.97 | 0.95 | 0.00 | 0.91 | 0.91 | 0.91 | 0.94 |\n| macrophage | 6754 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| endothelial cell | 2404 | 0.78 | 0.62 | 0.84 | 0.82 | 0.00 | 0.88 | 0.87 | 0.89 | 0.92 |\n| capillary endothelial cell | 1840 | 0.73 | 0.61 | 0.78 | 0.77 | 0.00 | 0.80 | 0.82 | 0.86 | 0.88 |\n| pericyte | 1588 | 0.79 | 0.80 | 0.91 | 0.86 | 0.00 | 0.76 | 0.80 | 0.81 | 0.88 |\n| CD8-positive, alpha-beta T cell | 1374 | 0.70 | 0.73 | 0.82 | 0.78 | 0.00 | 0.77 | 0.84 | 0.86 | 0.83 |\n| neutrophil | 1305 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| vein endothelial cell | 798 | 0.62 | 0.29 | 0.66 | 0.66 | 0.00 | 0.77 | 0.78 | 0.81 | 0.83 |\n| CD4-positive, alpha-beta T cell | 638 | 0.73 | 0.73 | 0.79 | 0.66 | 0.00 | 0.80 | 0.86 | 0.87 | 0.84 |\n| endothelial cell of artery | 582 | 0.78 | 0.79 | 0.88 | 0.79 | 0.00 | 0.76 | 0.85 | 0.86 | 0.88 |\n| mature NK T cell | 461 | 0.67 | 0.69 | 0.76 | 0.73 | 0.00 | 0.77 | 0.89 | 0.89 | 0.83 |\n| monocyte | 384 | 0.85 | 0.84 | 0.87 | 0.82 | 0.00 | 0.79 | 0.77 | 0.79 | 0.88 |\n| basophil | 222 | 0.71 | 0.74 | 0.76 | 0.95 | 0.00 | 0.88 | 0.98 | 0.99 | 0.95 |\n| natural killer cell | 222 | 0.52 | 0.52 | 0.58 | 0.45 | 0.00 | 0.42 | 0.85 | 0.88 | 0.85 |\n| endothelial cell of lymphatic vessel | 177 | 0.95 | 0.95 | 0.96 | 0.88 | 0.00 | 0.95 | 0.98 | 0.97 | 0.96 |\n| mast cell | 140 | 0.00 | 0.60 | 0.70 | 0.94 | 0.00 | 0.99 | 0.98 | 0.99 | 0.99 |\n| B cell | 133 | 0.96 | 0.97 | 0.97 | 0.94 | 0.00 | 0.93 | 0.99 | 0.99 | 0.98 |\n| erythrocyte | 75 | 0.93 | 0.91 | 0.96 | 0.97 | 0.00 | 0.71 | 0.97 | 0.95 | 0.96 |\n| plasma cell | 58 | 0.97 | 0.95 | 0.98 | 0.97 | 0.00 | 0.91 | 1.00 | 1.00 | 0.99 |\n| T cell | 15 | 0.00 | 0.00 | 0.40 | 0.48 | 0.00 | 0.43 | 0.97 | 0.94 | 0.80 |\n| intermediate monocyte | 13 | 0.00 | 0.00 | 0.56 | 0.00 | 0.00 | 0.21 | 0.96 | 0.87 | 0.76 |\n| classical monocyte | 12 | 0.00 | 0.00 | 0.50 | 0.14 | 0.00 | 0.61 | 1.00 | 1.00 | 0.86 |\n| myeloid dendritic cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.09 | 0.91 | 0.67 | 0.00 |\n| non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |"
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celltypist.pkl

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checkpoint

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scanvi/model.pt

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