popV
/

tabula_sapiens_Uterus

@@ -5,7 +5,8 @@ tags:
 - biology
 - genomics
 - single-cell
-- anndata_version:0.11.1
 - popV
 - 'tissue: Uterus'
 ---
@@ -31,28 +32,28 @@ computed on a 10% random subset of the data that was not used for training.
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| fibroblast | 680 | 0.97 | 0.74 | 0.97 | 0.90 | 0.00 | 0.88 | 0.93 | 0.94 | 0.97 |
-| endothelial cell | 421 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
-| vascular associated smooth muscle cell | 375 | 0.67 | 0.29 | 0.81 | 0.73 | 0.00 | 0.58 | 0.64 | 0.66 | 0.75 |
-| epithelial cell of uterus | 158 | 0.98 | 0.97 | 0.98 | 0.96 | 0.00 | 0.98 | 0.98 | 0.97 | 0.98 |
-| CD8-positive, alpha-beta T cell | 125 | 0.85 | 0.84 | 0.88 | 0.78 | 0.00 | 0.81 | 0.81 | 0.82 | 0.89 |
-| pericyte | 101 | 0.44 | 0.24 | 0.31 | 0.31 | 0.00 | 0.40 | 0.40 | 0.39 | 0.43 |
-| macrophage | 94 | 0.98 | 0.94 | 0.96 | 0.96 | 0.00 | 0.94 | 0.97 | 0.96 | 0.98 |
-| myometrial cell | 87 | 0.83 | 0.00 | 0.84 | 0.57 | 0.00 | 0.75 | 0.70 | 0.74 | 0.84 |
-| CD4-positive, alpha-beta T cell | 51 | 0.80 | 0.75 | 0.84 | 0.47 | 0.00 | 0.87 | 0.82 | 0.85 | 0.84 |
-| ciliated epithelial cell | 31 | 0.97 | 0.87 | 0.97 | 0.83 | 0.00 | 0.97 | 0.98 | 1.00 | 0.97 |
-| mature NK T cell | 25 | 0.69 | 0.62 | 0.75 | 0.72 | 0.00 | 0.67 | 0.74 | 0.51 | 0.79 |
-| neutrophil | 11 | 0.85 | 0.91 | 0.82 | 0.86 | 0.00 | 0.69 | 0.96 | 0.95 | 0.88 |
-| myofibroblast cell | 18 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.16 | 0.17 | 0.21 | 0.00 |
-| natural killer cell | 5 | 0.00 | 0.00 | 0.29 | 0.00 | 0.00 | 0.33 | 0.13 | 0.13 | 0.00 |
-| mast cell | 6 | 0.92 | 0.83 | 0.91 | 0.86 | 0.00 | 0.92 | 0.92 | 0.92 | 0.92 |
-| B cell | 5 | 0.67 | 0.80 | 0.80 | 0.89 | 0.00 | 1.00 | 1.00 | 0.91 | 1.00 |
-| T cell | 4 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| plasma cell | 2 | 0.00 | 0.00 | 0.80 | 0.67 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
 | skeletal muscle satellite stem cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | endothelial cell of lymphatic vessel | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| innate lymphoid cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | adventitial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -63,33 +64,33 @@ The train accuracies are computed on the training data.
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| fibroblast | 5913 | 0.96 | 0.70 | 0.98 | 0.94 | 0.00 | 0.89 | 0.95 | 0.96 | 0.98 |
-| endothelial cell | 4276 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |
-| vascular associated smooth muscle cell | 3220 | 0.64 | 0.07 | 0.86 | 0.83 | 0.00 | 0.63 | 0.70 | 0.73 | 0.80 |
-| epithelial cell of uterus | 1259 | 0.97 | 0.94 | 0.99 | 0.97 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |
-| CD8-positive, alpha-beta T cell | 1216 | 0.85 | 0.84 | 0.90 | 0.85 | 0.00 | 0.89 | 0.93 | 0.95 | 0.94 |
-| pericyte | 932 | 0.45 | 0.20 | 0.51 | 0.51 | 0.00 | 0.47 | 0.56 | 0.56 | 0.62 |
-| macrophage | 835 | 0.96 | 0.94 | 0.97 | 0.96 | 0.00 | 0.96 | 0.98 | 0.98 | 0.97 |
-| myometrial cell | 830 | 0.83 | 0.00 | 0.88 | 0.69 | 0.00 | 0.79 | 0.79 | 0.87 | 0.89 |
-| CD4-positive, alpha-beta T cell | 387 | 0.73 | 0.69 | 0.83 | 0.68 | 0.00 | 0.84 | 0.91 | 0.93 | 0.90 |
-| ciliated epithelial cell | 289 | 0.95 | 0.86 | 0.99 | 0.91 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |
-| mature NK T cell | 182 | 0.66 | 0.44 | 0.77 | 0.74 | 0.00 | 0.81 | 0.84 | 0.90 | 0.88 |
-| neutrophil | 92 | 0.88 | 0.90 | 0.95 | 0.89 | 0.00 | 0.76 | 0.99 | 0.97 | 0.97 |
-| myofibroblast cell | 83 | 0.00 | 0.00 | 0.17 | 0.16 | 0.00 | 0.21 | 0.39 | 0.52 | 0.37 |
-| natural killer cell | 87 | 0.00 | 0.02 | 0.39 | 0.46 | 0.00 | 0.66 | 0.89 | 0.87 | 0.72 |
-| mast cell | 59 | 0.94 | 0.96 | 0.97 | 0.90 | 0.00 | 0.97 | 0.98 | 0.94 | 0.98 |
-| B cell | 45 | 0.78 | 0.84 | 0.97 | 0.84 | 0.00 | 0.93 | 0.99 | 1.00 | 0.99 |
-| T cell | 43 | 0.00 | 0.00 | 0.24 | 0.04 | 0.00 | 0.62 | 0.91 | 0.98 | 0.85 |
-| monocyte | 20 | 0.00 | 0.00 | 0.52 | 0.16 | 0.00 | 0.79 | 0.98 | 0.98 | 0.60 |
-| plasma cell | 17 | 0.00 | 0.00 | 0.97 | 0.64 | 0.00 | 0.72 | 1.00 | 1.00 | 1.00 |
-| skeletal muscle satellite stem cell | 17 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 0.89 | 0.97 | 1.00 |
-| endothelial cell of lymphatic vessel | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 1.00 | 0.92 | 0.29 |
-| innate lymphoid cell | 4 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.89 | 1.00 | 1.00 | 1.00 |
-| intermediate monocyte | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.00 |
-| adventitial cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.19 | 0.38 | 0.73 | 0.00 |
-| myeloid dendritic cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.44 | 1.00 | 1.00 | 0.00 |
-| epithelial fate stem cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
-| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 1.00 | 1.00 | 0.00 |
 </details>

 - biology
 - genomics
 - single-cell
+- anndata_version:0.11.3
+- python_version:3.11.11
 - popV
 - 'tissue: Uterus'
 ---
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
+| fibroblast | 688 | 0.96 | 0.76 | 0.97 | 0.94 | 0.00 | 0.92 | 0.93 | 0.94 | 0.97 |
+| endothelial cell | 424 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
+| vascular associated smooth muscle cell | 377 | 0.71 | 0.29 | 0.81 | 0.76 | 0.00 | 0.57 | 0.61 | 0.71 | 0.76 |
+| epithelial cell of uterus | 148 | 0.98 | 0.97 | 0.97 | 0.90 | 0.00 | 0.99 | 0.98 | 0.96 | 0.98 |
+| CD8-positive, alpha-beta T cell | 129 | 0.84 | 0.85 | 0.87 | 0.73 | 0.00 | 0.83 | 0.81 | 0.85 | 0.88 |
+| pericyte | 91 | 0.41 | 0.34 | 0.30 | 0.21 | 0.00 | 0.43 | 0.42 | 0.42 | 0.45 |
+| macrophage | 101 | 0.96 | 0.94 | 0.96 | 0.94 | 0.00 | 0.95 | 0.95 | 0.96 | 0.96 |
+| myometrial cell | 90 | 0.86 | 0.02 | 0.86 | 0.67 | 0.00 | 0.80 | 0.71 | 0.78 | 0.86 |
+| CD4-positive, alpha-beta T cell | 48 | 0.76 | 0.73 | 0.74 | 0.35 | 0.00 | 0.78 | 0.79 | 0.81 | 0.77 |
+| ciliated epithelial cell | 34 | 0.95 | 0.94 | 0.92 | 0.56 | 0.00 | 0.94 | 0.97 | 1.00 | 0.97 |
+| mature NK T cell | 18 | 0.62 | 0.55 | 0.65 | 0.33 | 0.00 | 0.74 | 0.61 | 0.50 | 0.74 |
+| neutrophil | 13 | 0.87 | 0.90 | 0.83 | 0.82 | 0.00 | 0.87 | 0.96 | 0.96 | 0.90 |
+| myofibroblast cell | 16 | 0.00 | 0.00 | 0.11 | 0.00 | 0.00 | 0.18 | 0.10 | 0.15 | 0.00 |
+| natural killer cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 0.31 | 0.25 | 0.33 |
+| mast cell | 6 | 0.92 | 0.92 | 0.92 | 0.83 | 0.00 | 1.00 | 1.00 | 0.92 | 0.92 |
+| B cell | 3 | 0.75 | 1.00 | 0.86 | 0.75 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |
+| T cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
+| monocyte | 3 | 0.00 | 0.00 | 0.50 | 0.50 | 0.00 | 0.33 | 0.00 | 0.50 | 0.00 |
+| plasma cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
 | skeletal muscle satellite stem cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | endothelial cell of lymphatic vessel | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
+| innate lymphoid cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 |
 | intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | adventitial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
+| fibroblast | 5905 | 0.97 | 0.73 | 0.98 | 0.96 | 0.00 | 0.92 | 0.95 | 0.95 | 0.98 |
+| endothelial cell | 4273 | 0.99 | 0.98 | 1.00 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |
+| vascular associated smooth muscle cell | 3218 | 0.67 | 0.10 | 0.86 | 0.82 | 0.00 | 0.64 | 0.67 | 0.73 | 0.79 |
+| epithelial cell of uterus | 1269 | 0.98 | 0.94 | 0.99 | 0.95 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
+| CD8-positive, alpha-beta T cell | 1212 | 0.84 | 0.83 | 0.90 | 0.81 | 0.00 | 0.91 | 0.92 | 0.94 | 0.93 |
+| pericyte | 942 | 0.46 | 0.34 | 0.51 | 0.47 | 0.00 | 0.50 | 0.55 | 0.57 | 0.60 |
+| macrophage | 828 | 0.96 | 0.94 | 0.97 | 0.95 | 0.00 | 0.96 | 0.98 | 0.98 | 0.97 |
+| myometrial cell | 827 | 0.84 | 0.00 | 0.88 | 0.74 | 0.00 | 0.84 | 0.79 | 0.86 | 0.89 |
+| CD4-positive, alpha-beta T cell | 390 | 0.74 | 0.72 | 0.84 | 0.52 | 0.00 | 0.87 | 0.91 | 0.92 | 0.89 |
+| ciliated epithelial cell | 286 | 0.99 | 0.91 | 0.99 | 0.80 | 0.00 | 0.98 | 1.00 | 0.98 | 0.99 |
+| mature NK T cell | 189 | 0.67 | 0.46 | 0.76 | 0.54 | 0.00 | 0.86 | 0.85 | 0.87 | 0.88 |
+| neutrophil | 90 | 0.88 | 0.82 | 0.95 | 0.83 | 0.00 | 0.79 | 0.99 | 0.97 | 0.98 |
+| myofibroblast cell | 85 | 0.00 | 0.00 | 0.25 | 0.09 | 0.00 | 0.23 | 0.44 | 0.47 | 0.37 |
+| natural killer cell | 87 | 0.00 | 0.00 | 0.47 | 0.25 | 0.00 | 0.76 | 0.81 | 0.85 | 0.76 |
+| mast cell | 59 | 0.94 | 0.97 | 0.98 | 0.93 | 0.00 | 0.93 | 0.98 | 0.95 | 0.98 |
+| B cell | 47 | 0.77 | 0.84 | 0.97 | 0.86 | 0.00 | 0.95 | 1.00 | 0.99 | 0.99 |
+| T cell | 42 | 0.00 | 0.00 | 0.24 | 0.00 | 0.00 | 0.60 | 0.98 | 0.98 | 0.86 |
+| monocyte | 18 | 0.00 | 0.00 | 0.44 | 0.18 | 0.00 | 0.61 | 0.92 | 0.92 | 0.56 |
+| plasma cell | 18 | 0.00 | 0.00 | 1.00 | 0.48 | 0.00 | 0.82 | 1.00 | 1.00 | 1.00 |
+| skeletal muscle satellite stem cell | 17 | 0.00 | 0.00 | 0.11 | 0.00 | 0.00 | 0.88 | 0.87 | 1.00 | 1.00 |
+| endothelial cell of lymphatic vessel | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.32 | 0.86 | 1.00 | 0.29 |
+| innate lymphoid cell | 4 | 0.00 | 0.00 | 0.86 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |
+| intermediate monocyte | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.77 | 1.00 | 0.91 | 0.00 |
+| adventitial cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 1.00 | 0.89 | 0.00 |
+| myeloid dendritic cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.57 | 1.00 | 1.00 | 0.00 |
+| epithelial fate stem cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
+| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |
 </details>