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OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 419 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 292 | 0.97 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.97 | 0.99 |\n| male germ cell | 13 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |\n| peritubular myoid cell | 9 | 0.74 | 0.74 | 0.71 | 0.50 | 0.00 | 0.76 | 0.78 | 0.82 | 0.78 |\n| spermatogonium | 6 | 1.00 | 1.00 | 1.00 | 0.91 | 0.00 | 0.67 | 1.00 | 0.92 | 1.00 |\n| stromal cell | 4 | 0.73 | 0.80 | 0.67 | 0.46 | 0.00 | 0.67 | 0.60 | 0.73 | 0.73 |\n| tissue-resident macrophage | 2 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 6 | 0.91 | 0.91 | 0.91 | 0.91 | 0.00 | 0.91 | 0.91 | 0.91 | 0.91 |\n| Leydig cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| macrophage | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 3590 | 0.97 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| spermatocyte | 2778 | 0.96 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.98 | 0.98 | 0.99 |\n| male germ cell | 103 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| peritubular myoid cell | 58 | 0.74 | 0.84 | 0.87 | 0.79 | 0.00 | 0.94 | 0.98 | 0.99 | 0.94 |\n| spermatogonium | 58 | 0.86 | 0.85 | 0.92 | 0.93 | 0.00 | 0.66 | 0.90 | 0.89 | 0.91 |\n| stromal cell | 57 | 0.81 | 0.74 | 0.86 | 0.81 | 0.00 | 0.96 | 1.00 | 1.00 | 0.93 |\n| tissue-resident macrophage | 52 | 0.92 | 0.98 | 0.98 | 0.95 | 0.00 | 0.97 | 1.00 | 1.00 | 0.98 |\n| endothelial cell | 47 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| Leydig cell | 9 | 0.00 | 0.30 | 0.33 | 0.40 | 0.00 | 0.76 | 1.00 | 1.00 | 0.71 |\n| CD8-positive, alpha-beta T cell | 3 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |\n| CD4-positive, alpha-beta T cell | 2 | 0.00 | 0.57 | 0.57 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| mast cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| macrophage | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |\n| B cell | 1 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |\n| monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 410 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 294 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.99 |\n| male germ cell | 12 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.96 | 1.00 |\n| peritubular myoid cell | 11 | 0.77 | 0.88 | 0.87 | 0.70 | 0.00 | 0.73 | 0.91 | 0.91 | 0.87 |\n| spermatogonium | 6 | 0.92 | 0.92 | 0.92 | 0.86 | 0.00 | 0.80 | 0.86 | 0.86 | 0.86 |\n| stromal cell | 6 | 0.86 | 0.25 | 0.77 | 0.75 | 0.00 | 0.40 | 0.86 | 0.92 | 0.86 |\n| tissue-resident macrophage | 4 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 8 | 0.86 | 0.93 | 0.93 | 0.93 | 0.00 | 0.93 | 0.93 | 0.86 | 0.93 |\n| Leydig cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| macrophage | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 3599 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| spermatocyte | 2776 | 0.97 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| male germ cell | 104 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| peritubular myoid cell | 56 | 0.75 | 0.77 | 0.83 | 0.71 | 0.00 | 0.89 | 0.98 | 0.97 | 0.94 |\n| spermatogonium | 58 | 0.88 | 0.85 | 0.92 | 0.92 | 0.00 | 0.82 | 0.91 | 0.89 | 0.93 |\n| stromal cell | 55 | 0.81 | 0.49 | 0.83 | 0.78 | 0.00 | 0.76 | 1.00 | 1.00 | 0.93 |\n| tissue-resident macrophage | 50 | 0.91 | 0.95 | 0.97 | 0.95 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |\n| endothelial cell | 45 | 1.00 | 0.98 | 1.00 | 0.93 | 0.00 | 1.00 | 1.00 | 0.99 | 1.00 |\n| Leydig cell | 9 | 0.00 | 0.29 | 0.35 | 0.18 | 0.00 | 1.00 | 1.00 | 1.00 | 0.80 |\n| CD8-positive, alpha-beta T cell | 3 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| CD4-positive, alpha-beta T cell | 2 | 0.00 | 0.29 | 0.57 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |\n| mast cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| macrophage | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| B cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |"
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celltypist.pkl

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harmony_knn_classifier.joblib

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